These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_619#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 592 fasta sequence [GGGGATCACCGCCCTCGCTCCCAGCAGCATGAAGATCAAGGTCGTCGCGCCGCCCGAGAGGAAGTACTCCGTCTGGATCGGAGGCTCCATCCTCGCATCACTCAGCACCTTCCAGCAGATGTGGATTGCCAAGGCTGAGTACGACGAGTCCGGCCCCTCCATCGTTCACCGAAAGTGCTTCTAATTTCTTTTTTTACCTATTAATTAATGATTAATCCTTAATTAAAAAACAACAATAAACTAACTAAGCACCACATAATATATATATGCTACTTATAAGAGTACGTCACCACCACACCGCTCCTCACGTCCAGCTTCCTTTTTCCATTTCTCCCCTATTTTCTTTCTTATACACTACAATTATCCACTCATTTGGAGGTAGACCTTATATAGATATTACTATGTTTGCTTCTTCTTTTTTTTCCCTTTCATTTGGAGGCTGTACGTGTTTGATTATTATTATTATTTTGCCTGTATACGCTGTAAGTGCATCGATCTCACAAGATCGATCATCATCAACTTATCCATCCGGATTGAAATATGGTCTATATCTTTCATTTCCATTCTAAGAAATAATTCATGCATGATCGAT] [+] EMBL CA767365 [GGGGATCACCGCCCTCGCTCCCAGCAGCATGAAGATCAAGGTCGTCGCGCCGCCCGAGAGGAAGTACTCCGTCTGGATCGGAGGCTCCATCCTCGCATCACTCAGCACCTTCCAGCAGATGTGGATTGCCAAGGCTGAGTACGACGAGTCCGGCCCCTCCATCGTTCACCGAAAGTGCTTCTAATTTCTTTTTTTACCTATTAATTAATGATTAATCCTTAATTAAAAAACAACAATAAACTAACTAAGCACCACATAATATATATATGCTACTTATAAGAGTACGTCACCACCACACCGCTCCTCACGTCCAGCTTCCTTTTTCCATTTCTCCCCTATTTTCTTTCTTATACACTACAATTATCCACTCATTTGGAGGTAGACCTTATATAGATATTACTATGTTTGCTTCTTCTTTTTTTTCCCTTTCATTTGGAGGCTGTACGTGTTTGATTATTATTATTATTTTGCCTGTATACGCTGTAAGTGCATCGATCTCACAAGATCGATCATCATCAACTTATCCATCCGGATTGAAATATGGTCTATATCTTTCATTTCCATTCTAAGAAATAATTCATGCATGATCGAT] consensusID : consensus_619#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 343 fasta sequence [GTCCAGCTTCCTTTTTCCATTTCTCCCCTATTTTCTTTCTTATACACTACAATTATCCATTCATTTGGAGGTAGACCTTATATAGATATTACTATGTTTGCTTCTTCTTTTTTTTCCCTTTCATTTGGAGGCTGTACGTGTTTGATTATTATTATTATTTTGCCTGTATACGCTGTAAGTGCATCGATCTCACAAGATCGATCATCATCAACTTATCCATCCGGATTGAAATATGGTCTATATCTTTCATTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU165635 [GTCCAGCTTCCTTTTTCCATTTCTCCCCTATTTTCTTTCTTATACACTACAATTATCCATTCATTTGGAGGTAGACCTTATATAGATATTACTATGTTTGCTTCTTCTTTTTTTTCCCTTTCATTTGGAGGCTGTACGTGTTTGATTATTATTATTATTTTGCCTGTATACGCTGTAAGTGCATCGATCTCACAAGATCGATCATCATCAACTTATCCATCCGGATTGAAATATGGTCTATATCTTTCATTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_619#0 GGGGATCACCGCCCTCGCTCCCAGCAGCATGAAGATCAAGGTCGTCGCGCCGCCCGAGAG 60 consensus_619#1 ------------------------------------------------------------ consensus_619#0 GAAGTACTCCGTCTGGATCGGAGGCTCCATCCTCGCATCACTCAGCACCTTCCAGCAGAT 120 consensus_619#1 ------------------------------------------------------------ consensus_619#0 GTGGATTGCCAAGGCTGAGTACGACGAGTCCGGCCCCTCCATCGTTCACCGAAAGTGCTT 180 consensus_619#1 ------------------------------------------------------------ consensus_619#0 CTAATTTCTTTTTTTACCTATTAATTAATGATTAATCCTTAATTAAAAAACAACAATAAA 240 consensus_619#1 ------------------------------------------------------------ consensus_619#0 CTAACTAAGCACCACATAATATATATATGCTACTTATAAGAGTACGTCACCACCACACCG 300 consensus_619#1 ------------------------------------------------------------ consensus_619#0 CTCCTCACGTCCAGCTTCCTTTTTCCATTTCTCCCCTATTTTCTTTCTTATACACTACAA 360 consensus_619#1 --------GTCCAGCTTCCTTTTTCCATTTCTCCCCTATTTTCTTTCTTATACACTACAA 52 **************************************************** consensus_619#0 TTATCCACTCATTTGGAGGTAGACCTTATATAGATATTACTATGTTTGCTTCTTCTTTTT 420 consensus_619#1 TTATCCATTCATTTGGAGGTAGACCTTATATAGATATTACTATGTTTGCTTCTTCTTTTT 112 ******* **************************************************** consensus_619#0 TTTCCCTTTCATTTGGAGGCTGTACGTGTTTGATTATTATTATTATTTTGCCTGTATACG 480 consensus_619#1 TTTCCCTTTCATTTGGAGGCTGTACGTGTTTGATTATTATTATTATTTTGCCTGTATACG 172 ************************************************************ consensus_619#0 CTGTAAGTGCATCGATCTCACAAGATCGATCATCATCAACTTATCCATCCGGATTGAAAT 540 consensus_619#1 CTGTAAGTGCATCGATCTCACAAGATCGATCATCATCAACTTATCCATCCGGATTGAAAT 232 ************************************************************ consensus_619#0 ATGGTCTATATCTTTCATTTCCATTCTAAGAAATAATTCATGCATGATCGAT-------- 592 consensus_619#1 ATGGTCTATATCTTTCATTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 292 *********************** ** *** ** * * * * consensus_619#0 --------------------------------------------------- consensus_619#1 AAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 343 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||