These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6193#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1337 fasta sequence [TCGCCGCAGATCCCCAAACCTCTCCGCCGCCGCGCCGGCTCGCCTCGCGCGCCATGGCCGCCTCCGCCTCCGCCTCCGCCACCGCCTCCCTCTCCCACCTCCTCCTCGCGCGCGAGCCAGACCCCGCGCCTCTCCCCTCCCGCCGCGCCCCCGCCCTGCTCCCCTTGCCGCGGCGGCGCGGGCAGCGGCCCATCTCCGCCGCCGCCGCCGCCTCCGACCTCCTCTACGCCGCACCCTCCCTCAAGTCCCGGCTCGCCGCCGGGGAGACCCTGTACGGGCTCTTCCTCCTCTCCTTCTCCCCCACGCTCGCCGAGCTCGCCGCCCTCGCCGGCTACGACTACGTCGTCGTCGACATGGAGCACGGCCCCGGCGGCGTTCCCGAGGCGCTGGCCTGCCTCCGCGCCCTCGACGCCGCCCGTACCCCAGCCGTCATCCGCCTCCCCGAGGCCGGCCCCATCTGGGCCAAGAAGGCCCTCGACCTCGGCCCCGCGGGCCTCATGGTCCCCGCCGTCGAGTCCCCCGCCGCCGCGGCCGCCGCCGTGTCGCACTGCCGCTACCCGCCCCGAGGCGTTCGCGGCGCCGCCCACCCCATCGTCCGCGCCTCCGCGTACGGCCTCGACGACTCCTACCTCTCCCGCTGCGAGGACGAGACGCTAATCATCTGCCAGGTCGAGACCGCCGCTGGCATTGCGGAGGTCGACGCCATTGCCGCCGTCGACGGCGTCGACGTCGTCCAGATGGGACCGCTCGACTTGTCAGCCAGCATGGGGTACCTGTGGGACCCAGGGAACAGGAAGGTGCGAGCCAGGCTGAGGGAGGCCGAGAAGAAGGTGTTGGATGCCAGGAAGAAGAATGTGACAGCTTCAGATGGCAATGTCGCATATCTAGGCGGATTCGCCATGCCGAACGACCCGGCAGAGCAGCTCAAGCTGAGGGGTTACCACATGGTGTCTGGTGCAGTGGACATTGGGATGTTCCGGAAGGCGGCGTTGGAGGATGTCAAGCGGTTCAAGGAGGCAGTGATGGAAATCGGCGAGGAGGAAGGCGAGGAGGACGATGAAAAGAAGGACAAGGAAGACGACGGGTACTGGAGTGAGTGAGCACTGAGCAGAGTTGAGCTGAAGATGATCAAGGAACTGTGGTGATGGTGTCTTTTGTTTGTCTTCTGAATTCAGATTGAGAGGTCTAAGTGGTTCCATTTTCCAGGGGCCTC-TGGTGTACTCTTGTTTAGTTGTCAGGTCGATTTTGAGAACATCATGTTTGGGCATCTTAGGATTCCCATTTGTAGGTGGTAACTTCTGAGTACCAATAAAAGCCAGATTTTTATTCTGATGTTA] [+] EMBL AK121655 [TCGCCGCAGATCCCCAAACCTCTCCGCCGCCGCGCCGGCTCGCCTCGCGCGCCATGGCCGCCTCCGCCTCCGCCTCCGCCACCGCCTCCCTCTCCCACCTCCTCCTCGCGCGCGAGCCAGACCCCGCGCCTCTCCCCTCCCGCCGCGCCCCCGCCCTGCTCCCCTTGCCGCGGCGGCGCGGGCAGCGGCCCATCTCCGCCGCCGCCGCCGCCTCCGACCTCCTCTACGCCGCACCCTCCCTCAAGTCCCGGCTCGCCGCCGGGGAGACCCTGTACGGGCTCTTCCTCCTCTCCTTCTCCCCCACGCTCGCCGAGCTCGCCGCCCTCGCCGGCTACGACTACGTCGTCGTCGACATGGAGCACGGCCCCGGCGGCGTTCCCGAGGCGCTGGCCTGCCTCCGCGCCCTCGACGCCGCCCGTACCCCAGCCGTCATCCGCCTCCCCGAGGCCGGCCCCATCTGGGCCAAGAAGGCCCTCGACCTCGGCCCCGCGGGCCTCATGGTCCCCGCCGTCGAGTCCCCCGCCGCCGCGGCCGCCGCCGTGTCGCACTGCCGCTACCCGCCCCGAGGCGTTCGCGGCGCCGCCCACCCCATCGTCCGCGCCTCCGCGTACGGCCTCGACGACTCCTACCTCTCCCGCTGCGAGGACGAGACGCTAATCATCTGCCAGGTCGAGACCGCCGCTGGCATTGCGGAGGTCGACGCCATTGCCGCCGTCGACGGCGTCGACGTCGTCCAGATGGGACCGCTCGACTTGTCAGCCAGCATGGGGTACCTGTGGGACCCAGGGAACAGGAAGGTGCGAGCCAGGCTGAGGGAGGCCGAGAAGAAGGTGTTGGATGCCAGGAAGAAGAATGTGACAGCTTCAGATGGCAATGTCGCATATCTAGGCGGATTCGCCATGCCGAACGACCCGGCAGAGCAGCTCAAGCTGAGGGGTTACCACATGGTGTCTGGTGCAGTGGACATTGGGATGTTCCGGAAGGCGGCGTTGGAGGATGTCAAGCGGTTCAAGGAGGCAGTGATGGAAATCGGCGAGGAGGAAGGCGAGGAGGACGATGAAAAGAAGGACAAGGAAGACGACGGGTACTGGAGTGAGTGAGCACTGAGCAGAGTTGAGCTGAAGATGATCAAGGAACTGTGGTGATGGTGTCTTTTGTTTGTCTTCTGAATTCAGATTGAGAGGTCTAAGTGGTTCCATTTTCCAGGGGCCTC TGGTGTACTCTTGTTTAGTTGTCAGGTCGATTTTGAGAACATCATGTTTGGGCATCTTAGGATTCCCATTTGTAGGTGGTAACTTCTGAGTACCAATAAAAGCCAGA ] [+] EMBL C27971 [ AGGTGTTGGATGCCAGGAAGAAGAATGTGACAGCTTCAGATGGCAATGTCGCATATCTAGGCGGATTCG CATGCCGAACGACCCGGCAGAGCAGCTCAAGCTGAGGGGTTACCACATGGTGTCTGGTGCAGTGGACATTGGGATGTTCCGGAA GCGGCGTTGGAGGATGTCAAGCGGTTCAAGGAGGCAGTGATGGAAATCGGCGAGGAGGAAGGCGAGGAGGACGATGAAAAGAAGGACAAGGAAGACGACGGGTACTGGAGTGAGTNAGCACTGAGCAGAGTTGAGCTGAAGATGATCAAGGAACTGTGGTGATGGTGTCTTTTGTTTGTCTTCTGAATTCAGATTGAGAGGTCTAAGTGGTTCCATTTTCCAGGGGCCTCTTGGTGTACTCTTGTTTAGTTGTCAGGTCGATTTTNAGACCATCATGTTT GGCATC ] [-] EMBL BI305980 [ GTCTAAGTGGTTCCATTTTCCAGGGGCCTC TGGTGTACTCTTGTTTAGTTGTCAGGTCGATTTTGAGAACATCATGTTTGGGCATCTTAGGATTCCCATTTGTAGGTGGTAACTTCTGAGTACCAATAAAAGCCAGATTTTTATTCTGATGTTA] consensusID : consensus_6193#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 177 fasta sequence [TGAGAGGTCTAAGTGGTTCCATTTTCCAGGGGCCTCTGGTGTACTCTTGTTTGTTGTCAGGNGATTTTGAGAACATATGTTTGGCACTNGGATTCCATTTATGGTGGAACTCTGACCAATAAAAGCCAGANTCACAGAAAAGGTGANCTNCCGNTTGGTGCGTCTCTCGTTCCGCTG] [+] EMBL AA751024 [TGAGAGGTCTAAGTGGTTCCATTTTCCAGGGGCCTCTGGTGTACTCTTGTTTGTTGTCAGGNGATTTTGAGAACATATGTTTGGCACTNGGATTCCATTTATGGTGGAACTCTGACCAATAAAAGCCAGANTCACAGAAAAGGTGANCTNCCGNTTGGTGCGTCTCTCGTTCCGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6193#0 TCGCCGCAGATCCCCAAACCTCTCCGCCGCCGCGCCGGCTCGCCTCGCGCGCCATGGCCG 60 consensus_6193#1 ------------------------------------------------------------ consensus_6193#0 CCTCCGCCTCCGCCTCCGCCACCGCCTCCCTCTCCCACCTCCTCCTCGCGCGCGAGCCAG 120 consensus_6193#1 ------------------------------------------------------------ consensus_6193#0 ACCCCGCGCCTCTCCCCTCCCGCCGCGCCCCCGCCCTGCTCCCCTTGCCGCGGCGGCGCG 180 consensus_6193#1 ------------------------------------------------------------ consensus_6193#0 GGCAGCGGCCCATCTCCGCCGCCGCCGCCGCCTCCGACCTCCTCTACGCCGCACCCTCCC 240 consensus_6193#1 ------------------------------------------------------------ consensus_6193#0 TCAAGTCCCGGCTCGCCGCCGGGGAGACCCTGTACGGGCTCTTCCTCCTCTCCTTCTCCC 300 consensus_6193#1 ------------------------------------------------------------ consensus_6193#0 CCACGCTCGCCGAGCTCGCCGCCCTCGCCGGCTACGACTACGTCGTCGTCGACATGGAGC 360 consensus_6193#1 ------------------------------------------------------------ consensus_6193#0 ACGGCCCCGGCGGCGTTCCCGAGGCGCTGGCCTGCCTCCGCGCCCTCGACGCCGCCCGTA 420 consensus_6193#1 ------------------------------------------------------------ consensus_6193#0 CCCCAGCCGTCATCCGCCTCCCCGAGGCCGGCCCCATCTGGGCCAAGAAGGCCCTCGACC 480 consensus_6193#1 ------------------------------------------------------------ consensus_6193#0 TCGGCCCCGCGGGCCTCATGGTCCCCGCCGTCGAGTCCCCCGCCGCCGCGGCCGCCGCCG 540 consensus_6193#1 ------------------------------------------------------------ consensus_6193#0 TGTCGCACTGCCGCTACCCGCCCCGAGGCGTTCGCGGCGCCGCCCACCCCATCGTCCGCG 600 consensus_6193#1 ------------------------------------------------------------ consensus_6193#0 CCTCCGCGTACGGCCTCGACGACTCCTACCTCTCCCGCTGCGAGGACGAGACGCTAATCA 660 consensus_6193#1 ------------------------------------------------------------ consensus_6193#0 TCTGCCAGGTCGAGACCGCCGCTGGCATTGCGGAGGTCGACGCCATTGCCGCCGTCGACG 720 consensus_6193#1 ------------------------------------------------------------ consensus_6193#0 GCGTCGACGTCGTCCAGATGGGACCGCTCGACTTGTCAGCCAGCATGGGGTACCTGTGGG 780 consensus_6193#1 ------------------------------------------------------------ consensus_6193#0 ACCCAGGGAACAGGAAGGTGCGAGCCAGGCTGAGGGAGGCCGAGAAGAAGGTGTTGGATG 840 consensus_6193#1 ------------------------------------------------------------ consensus_6193#0 CCAGGAAGAAGAATGTGACAGCTTCAGATGGCAATGTCGCATATCTAGGCGGATTCGCCA 900 consensus_6193#1 ------------------------------------------------------------ consensus_6193#0 TGCCGAACGACCCGGCAGAGCAGCTCAAGCTGAGGGGTTACCACATGGTGTCTGGTGCAG 960 consensus_6193#1 ------------------------------------------------------------ consensus_6193#0 TGGACATTGGGATGTTCCGGAAGGCGGCGTTGGAGGATGTCAAGCGGTTCAAGGAGGCAG 1020 consensus_6193#1 ------------------------------------------------------------ consensus_6193#0 TGATGGAAATCGGCGAGGAGGAAGGCGAGGAGGACGATGAAAAGAAGGACAAGGAAGACG 1080 consensus_6193#1 ------------------------------------------------------------ consensus_6193#0 ACGGGTACTGGAGTGAGTGAGCACTGAGCAGAGTTGAGCTGAAGATGATCAAGGAACTGT 1140 consensus_6193#1 ------------------------------------------------------------ consensus_6193#0 GGTGATGGTGTCTTTTGTTTGTCTTCTGAATTCAGATTGAGAGGTCTAAGTGGTTCCATT 1200 consensus_6193#1 -------------------------------------TGAGAGGTCTAAGTGGTTCCATT 23 *********************** consensus_6193#0 TTCCAGGGGCCTCTGGTGTACTCTTGTTTAGTTGTCAGGTCGATTTTGAGAACATCATGT 1260 consensus_6193#1 TTCCAGGGGCCTCTGGTGTACTCTTGTTT-GTTGTCAGGN-GATTTTGAGAACAT-ATGT 80 ***************************** ********* ************** **** consensus_6193#0 TTGGGCATCTTAGGATTCCCATTTGTAGGTGGTAACTTCTGAGTACCAATAAAAGCCAGA 1320 consensus_6193#1 TTGG---CACTNGGATTCC-ATTTAT-GGTGG--AACTCTGA---CCAATAAAAGCCAGA 130 **** * ******* **** * ***** * ***** *************** consensus_6193#0 TTTTTATTC----TGATGTTA-------------------------- 1337 consensus_6193#1 NTCACAGAAAAGGTGANCTNCCGNTTGGTGCGTCTCTCGTTCCGCTG 177 * * *** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||