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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6194#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 790 fasta sequence
[CGAGACAAGGGGGAGGGTTGTTCTTCCCTACTATCTCTCCCACCTCCACCGCCTCCGGCCGCCTCTCCGGCGATCGCCGACTTCTGCGAGTAGGCGTGTATCCCCTTGCGCCTCTTCGCTGATCCTCTTTTGTTCAGCGGCTGCTCTGATTGGTGGGGGAGATGGCTGCACCACTTATAACAGGACTTGCGGTGGCAGCCGCTGCTCTTGCCAGTAGATATAGCATCCAAGCTTGGCATGCTTATAAAGCAAGGCCTATAGTTCCCAGGATGCGCAAATTCTATGAAGGTGGTTTTCAACCTGCAATGACCCGAAGGGAAGCTGGTTTAATCCTGGGTGTCAGAGAAAATGTCCATCCTGAGAAGGTTAAAGAGGCACACAAAAAGGTCATGGTTGCCAATCATCCGGATGCAGGGGGCAGTCATTACCTTGCTTCGAAGATTAATGAGGCCAAAGATGTTTTGCTAGGTAAAACAAAAGGAGGTGGATCAGTCTTTTGAGTATATAATATGCACTGTTCGTTCC-----TTTTTTTTTGAAACCAAAGCCAGGCTAAGCTGGAGNTATATTAAAGGAGAATAGAAAGTATTTACAATATCACCCAAGAAANGGGGAAAGAGATAGAACAGGGGAAACAAAGGAAGAAAAGCCACCAAGGGAAAACCTAAAAGGGAGATGATNAACCCGAAANTTTTGATATACATGAANGNAGAAATAAGCCNTTGGTCCTTGGTNCCTATCNCTAAGTTCCAGCACTTANATGATNAACCCGAAATTTTGATGGGGTTCCAAA]
[+] EMBL CB096844 [CGAGACAAGGGGGAGGGTTGTTCTTCCCTACTATCTCTCCCACCTCCACCGCCTCCGGCCGCCTCTCCGGCGATCGCCGACTTCTGCGAGTAGGCGTGTATCCCCTTGCGCCTCTTCGCTGATCCTCTTTTGTTCAGCGGCTGCTCTGATTGGTGGGGGAGATGGCTGCACCACTTATAACAGGACTTGCGGTGGCAGCCGCTGCTCTTGCCAGTAGATATAGCATCCAAGCTTGGCATGCTTATAAAGCAAGGCCTATAGTTCCCAGGATGCGCAAATTCTATGAAGGTGGTTTTCAACCTGCAATGACCCGAAGGGAAGCTGGTTTAATCCTGGGTGTCAGAGAAAATGTCCATCCTGAGAAGGTTAAAGAGGCACACAAAAAGGTCATGGTTGCCAATCATCCGGATGCAGGGGGCAGTCATTACCTTGCTTCGAAGATTAATGAGGCCAAAGATGTTTTGCTAGGTAAAACAAAAGGAGGTGGATCAGTCTTTTGAGTATATAATATGCACTGTTCGTTCC TTTTTTTTTGAAACCAAAGCCAGGCTAAGCTGGAGNTATATTAAAGGAGAATAGAAAGTATTTACAATATCACCCAAGAAANGGGGAAAGAGATAGAACAGGGGAAACAAAGGAAGAAAAGCCACCAAGGGAAAACCTAAAAGGGAGATGATNAACCCGAAANTTTTGATATACATGAANGNAGAAATAAGCCNTTGGTCCTTGGTNCCTATCNCTAAGTTCCAGCACTTANATGATNAACCCGAAATTTTGATGGGGTTCCAAA]
[+] EMBL AK121694 [ TCTTCCCTACTATCTCTCCCACCTCCACCGCCTCCGGCCGCCTCTCCGGCGATCGCCGACTTCTGCGAGTAGGCGTGTATCCCCTTGCGCCTCTTCGCTGATCCTCTTTTGTTCAGCGGCTGCTCTGATTGGTGGGGGAGATGGCTGCACCACTTATAGCAGGACTTGCGGTGGCAGCCGCTGCTCTTGCCAGTAGATATAGCATCCAAGCTTGGCATGCTTATAAAGCAAGGCCTATAGTTCCCAGGATGCGCAAATTCTATGAAGGTGGTTTTCAACCTGAAATGGCCCGAAGGGAAGCTGGTTTAATCCTGGGTGTCAGAGAAAATGTCCATCCTGAGAAGGTTAAAGAGGCACACAAAAAGGTCATGGTTGCCAATCATCCGGATGCAGGGGGCAGTCATTACCTTGCTTCGAAGATTAATGAGGCCAAAGATGTTTTGCTAGGTAAAACAAAAGGAGGTGGATCAGTCTTTTGAGTATATAATATGCACTGTTCGTTCCTTTTTTTTTTTTTTGAAACCAAAGCCAGGCTAAGCTGGAGTTATATT AAGGAGAATAGAAAGTATTTACAATATCA CCAAGAAA GGTGAAAGAGATAGAACAGGGGAAACAAA GAAGAAAAG CAACAA GGAAAACCTAAAAGGGAGATGAT AAACCGAAA TTTTGATATACATGAAGGTAGAATTAgt ]
consensusID : consensus_6194#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 692 fasta sequence
[TTTTGGTTCTCCCATGGGCCAGCCAAGATATGAAGAGGCTCTTAAGTTGTGTTCACTGGTGCATGACCTTGAAATTTTGCCCTTTGGTGGCCTTCTCAAATCGGGGAAAGAGGAGCAAATCTTAGTGGAGGGCAGAAGCAACGCATTCAATTAGCTCGTGCATTGTATCACGATGCGGATATTTATCTTTTAGATGACCCTTTCAGCTCTGTCGATGCACATACAGCTACAAGTCTTTTTAATGAATATGTGATGGGAGCTTTGTCGGAAAAGACGGTTCTGCTAGTAACACATCAAGTGGAGTTCTTGCATGCATTTGATTCTGTTCTAGTAAGTATTCATGCTTTCTTGAGCAATTTGCGTTTTGATAACGTCATGATGCCTCAATAACCACTTATATTCTAGTATTAAGTATTCATGCTTTGTTGAGCAATTTGCATTTTGATACTGTCATGACTCATGATGCCTCAATAATCACATATACTCGTGTCCG-GTTCGTTGTTCGCCCATCCACACTCCTCAATAATCTGGTTATTTTGTTAATAGAGAGTAAGATGTTTTTTCCGCAGTTAATGTTTTTTTGAAACCGTAGCCAGGCTAAG-CTGGAGTTATATTAAGGAGAATAGAAAGTATTTTCAATATCATCAA-GGAAGGTGAAAGAGAGAAAAAAAGGAAACATGAAAAAAAAAAAA]
[-] EMBL CA762287 [TTTTGGTTCTCCCATGGGCCAGCCAAGATATGAAGAGGCTCTTAAGTTGTGTTCACTGGTGCATGACCTTGAAATTTTGCCCTTTGGTGGCCTTCTCAAATCGGGGAAAGAGGAGCAAATCTTAGTGGAGGGCAGAAGCAACGCATTCAATTAGCTCGTGCATTGTATCACGATGCGGATATTTATCTTTTAGATGACCCTTTCAGCTCTGTCGATGCACATACAGCTACAAGTCTTTTTAATGAATATGTGATGGGAGCTTTGTCGGAAAAGACGGTTCTGCTAGTAACACATCAAGTGGAGTTCTTGCATGCATTTGATTCTGTTCTAGTAAGTATTCATGCTTTCTTGAGCAATTTGCGTTTTGATAACGTCATGATGCCTCAATAACCACTTATATTCTAGTATTAAGTATTCATGCTTTGTTGAGCAATTTGCATTTTGATACTGTCATGACTCATGATGCCTCAATAATCACATATACTCGTGTCCG GTTCGTTGTTCGCCCATCCACACTCCTCAATAATCTGGTTATTTTGTTAATAGAGAGTAAGATGTTTTTTCCGCAGTTAATGTTTTTTTGAAACCGTAGCCAGGCTAAG CTGGAGTTATATTAAGGAGAATAGAAAGTATTTTCAATATCATCAA GGAAGGTGAAAGAGAGAAAAAAAGGAAACATGAAAAAAAAAAAA]
[+] EMBL CA763997 [ GCAAATCTTAGTGGAGGGCAGAAGCAACGCATTCAATTAGCTCGTGCATTGTATCACGATGCGGATATTTATCTTTTAGATGACCCTTTCAGCTCTGTCGATGCACATACAGCTACAAGTCTTTTTAATGAATATGTGATGGGAGCTTTGTCGGAAAAGACGGTTCTGCTAGTAACACATCAAGTGGAGTTCTTGCATGCATTTGATTCTGTTCTAGTAAGTATTCATGCTTTCTTGAGCAATTTGCGTTCTGATAACGTCATGATGCCTCAATAACCACTTATATTCTAGTATTAAGTATTCATGCTTTGTTGAGCAATTTGCATTTTGATACTGTCATGACTCATGATGCCTCAATAATCACATATACTCGTGTCCGCTTTCGTTGTTCGCCCATCCACACTCCTCAATAATCTGGTTATTTTGTTAACAGAGAGTAAGATGTTTTTTCCGCAGTTAATGTTTTTTTGAAACCGTAGCCAGGCTAAGCCTGGAGTTATATTAAGGAGAATAGAAAGTATTTACAATATCATCAAGGGAAGGTGAAAGAGAGAAAAAAAGG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6194#0 ------------------CGAGACAAGGGGGAGGGTTGTTCTTCCCTACTATCTCTCCCA 42
consensus_6194#1 TTTTGGTTCTCCCATGGGCCAGCCAAGATATGAAGAGGCTCTTAAGTTGTGT---TCACT 57
* ** **** * * **** * * * ** *
consensus_6194#0 CCTCCACCGCCTCCGGCCGC--CTCTCCGGCGATCGCCGACTTCTGCGAGTAGGCGTGTA 100
consensus_6194#1 GGTGCATGACCTTGAAATTTTGCCCTTTGGTGGCCTTCTCAAATCGGGGAAAGAGGAGCA 117
* ** *** * ** ** * * * * * ** * * *
consensus_6194#0 TCCCCTTGCGCCTCTTCGCTGATCCTCTTTTGTTCAGCGGCTGCTCTGATTGGTGGGGGA 160
consensus_6194#1 AATCTTAGTGGAGGGCAGAAGCAACGCATTCAATTAGCTCGTGCATTGTATCACGATGCG 177
* * * * * * * * ** * *** *** ** * * *
consensus_6194#0 GATGGCTGCACCACTTATAAC------AGGACTTGCGGTG-----GCAGCCGCTGCTCTT 209
consensus_6194#1 GATATTTATCTTTTAGATGACCCTTTCAGCTCTGTCGATGCACATACAGCTACAAGTCTT 237
*** * ** ** ** ** ** ** **** * ****
consensus_6194#0 GCCAGTAGATATAGCATCCAAGCTTGGCATGCTTATAAAGCAAGGCCTATAGTTCCCAGG 269
consensus_6194#1 TTTAATGAATATGTGATGGGAGCTTTGTCGGAAAAGACGGTTCTGCTAGTAACACATCAA 297
* * **** ** ***** * * * * * ** ** *
consensus_6194#0 ATGCGCAAATTCTATGAAGGTGGTTTTCAACCTGCAATGACCCGAAGGGAAGCTGGTTTA 329
consensus_6194#1 GTGGAGTTCTTGCATGCATTTGATTCTGTTCTAGTAAGTATTC--ATGCTTTCTTGAGCA 355
** ** *** * ** ** * * * ** * * * * ** * *
consensus_6194#0 ATCCTGGGTGTCAGAGAAAATGTCCATCCTGAGAAGG---TTAAAGAGGCACACAAAAAG 386
consensus_6194#1 ATT-TGCGTTTTGATAACGTCATGATGCCTCAATAACCACTTATATTCTAGTATTAAGTA 414
** ** ** * * * *** * * *** * * **
consensus_6194#0 GTCATGGTT-GCCAATCATCCGGATGCAGGGGGCAGTCATTACCT----TGCTTCGAAGA 441
consensus_6194#1 TTCATGCTTTGTTGAGCAATTTGCATTTTGATACTGTCATGACTCATGATGCCTCAATAA 474
***** ** * * ** * * * ***** ** *** ** * *
consensus_6194#0 TTA-ATGAGGCCAAA---GATGTTTTGCTAGGTAAAACAAA------AGGAGGTGGATCA 491
consensus_6194#1 TCACATATACTCGTGTCCGGTTCGTTGTTCGCCCATCCACACTCCTCAATAATCTGGTTA 534
* * ** * * * *** * * * ** * * * * * *
consensus_6194#0 GTCTTTTGA--GTATATAATATGCACTGTTCG---TTCCTTTTTTTTTGAAACCAAAGCC 546
consensus_6194#1 TTTTGTTAATAGAGAGTAAGATGTTTTTTCCGCAGTTAATGTTTTTTTGAAACCGTAGCC 594
* * ** * * *** *** * * ** ** * ************* ****
consensus_6194#0 AGGCTAAGCTGGAGNTATATTAAAGGAGAATAGAAAGTATTTACAATATCACCCAAGAAA 606
consensus_6194#1 AGGCTAAGCTGGAGTTATATTAA-GGAGAATAGAAAGTATTTTCAATATCATCAAGGAAG 653
************** ******** ****************** ******** * * ***
consensus_6194#0 NGGGGAAAGAGATAGAACAGGGGAAACAAAGGAAGAAAAGCCACCAAGGGAAAACCTAAA 666
consensus_6194#1 GTGAAAGAGAGA-AAAAAAGGAAACATGAAAAAAAAAAAA-------------------- 692
* * ***** * ** *** * * ** ** ****
consensus_6194#0 AGGGAGATGATNAACCCGAAANTTTTGATATACATGAANGNAGAAATAAGCCNTTGGTCC 726
consensus_6194#1 ------------------------------------------------------------
consensus_6194#0 TTGGTNCCTATCNCTAAGTTCCAGCACTTANATGATNAACCCGAAATTTTGATGGGGTTC 786
consensus_6194#1 ------------------------------------------------------------
consensus_6194#0 CAAA 790
consensus_6194#1 ----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||