These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6194#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 790 fasta sequence [CGAGACAAGGGGGAGGGTTGTTCTTCCCTACTATCTCTCCCACCTCCACCGCCTCCGGCCGCCTCTCCGGCGATCGCCGACTTCTGCGAGTAGGCGTGTATCCCCTTGCGCCTCTTCGCTGATCCTCTTTTGTTCAGCGGCTGCTCTGATTGGTGGGGGAGATGGCTGCACCACTTATAACAGGACTTGCGGTGGCAGCCGCTGCTCTTGCCAGTAGATATAGCATCCAAGCTTGGCATGCTTATAAAGCAAGGCCTATAGTTCCCAGGATGCGCAAATTCTATGAAGGTGGTTTTCAACCTGCAATGACCCGAAGGGAAGCTGGTTTAATCCTGGGTGTCAGAGAAAATGTCCATCCTGAGAAGGTTAAAGAGGCACACAAAAAGGTCATGGTTGCCAATCATCCGGATGCAGGGGGCAGTCATTACCTTGCTTCGAAGATTAATGAGGCCAAAGATGTTTTGCTAGGTAAAACAAAAGGAGGTGGATCAGTCTTTTGAGTATATAATATGCACTGTTCGTTCC-----TTTTTTTTTGAAACCAAAGCCAGGCTAAGCTGGAGNTATATTAAAGGAGAATAGAAAGTATTTACAATATCACCCAAGAAANGGGGAAAGAGATAGAACAGGGGAAACAAAGGAAGAAAAGCCACCAAGGGAAAACCTAAAAGGGAGATGATNAACCCGAAANTTTTGATATACATGAANGNAGAAATAAGCCNTTGGTCCTTGGTNCCTATCNCTAAGTTCCAGCACTTANATGATNAACCCGAAATTTTGATGGGGTTCCAAA] [+] EMBL CB096844 [CGAGACAAGGGGGAGGGTTGTTCTTCCCTACTATCTCTCCCACCTCCACCGCCTCCGGCCGCCTCTCCGGCGATCGCCGACTTCTGCGAGTAGGCGTGTATCCCCTTGCGCCTCTTCGCTGATCCTCTTTTGTTCAGCGGCTGCTCTGATTGGTGGGGGAGATGGCTGCACCACTTATAACAGGACTTGCGGTGGCAGCCGCTGCTCTTGCCAGTAGATATAGCATCCAAGCTTGGCATGCTTATAAAGCAAGGCCTATAGTTCCCAGGATGCGCAAATTCTATGAAGGTGGTTTTCAACCTGCAATGACCCGAAGGGAAGCTGGTTTAATCCTGGGTGTCAGAGAAAATGTCCATCCTGAGAAGGTTAAAGAGGCACACAAAAAGGTCATGGTTGCCAATCATCCGGATGCAGGGGGCAGTCATTACCTTGCTTCGAAGATTAATGAGGCCAAAGATGTTTTGCTAGGTAAAACAAAAGGAGGTGGATCAGTCTTTTGAGTATATAATATGCACTGTTCGTTCC TTTTTTTTTGAAACCAAAGCCAGGCTAAGCTGGAGNTATATTAAAGGAGAATAGAAAGTATTTACAATATCACCCAAGAAANGGGGAAAGAGATAGAACAGGGGAAACAAAGGAAGAAAAGCCACCAAGGGAAAACCTAAAAGGGAGATGATNAACCCGAAANTTTTGATATACATGAANGNAGAAATAAGCCNTTGGTCCTTGGTNCCTATCNCTAAGTTCCAGCACTTANATGATNAACCCGAAATTTTGATGGGGTTCCAAA] [+] EMBL AK121694 [ TCTTCCCTACTATCTCTCCCACCTCCACCGCCTCCGGCCGCCTCTCCGGCGATCGCCGACTTCTGCGAGTAGGCGTGTATCCCCTTGCGCCTCTTCGCTGATCCTCTTTTGTTCAGCGGCTGCTCTGATTGGTGGGGGAGATGGCTGCACCACTTATAGCAGGACTTGCGGTGGCAGCCGCTGCTCTTGCCAGTAGATATAGCATCCAAGCTTGGCATGCTTATAAAGCAAGGCCTATAGTTCCCAGGATGCGCAAATTCTATGAAGGTGGTTTTCAACCTGAAATGGCCCGAAGGGAAGCTGGTTTAATCCTGGGTGTCAGAGAAAATGTCCATCCTGAGAAGGTTAAAGAGGCACACAAAAAGGTCATGGTTGCCAATCATCCGGATGCAGGGGGCAGTCATTACCTTGCTTCGAAGATTAATGAGGCCAAAGATGTTTTGCTAGGTAAAACAAAAGGAGGTGGATCAGTCTTTTGAGTATATAATATGCACTGTTCGTTCCTTTTTTTTTTTTTTGAAACCAAAGCCAGGCTAAGCTGGAGTTATATT AAGGAGAATAGAAAGTATTTACAATATCA CCAAGAAA GGTGAAAGAGATAGAACAGGGGAAACAAA GAAGAAAAG CAACAA GGAAAACCTAAAAGGGAGATGAT AAACCGAAA TTTTGATATACATGAAGGTAGAATTAgt ] consensusID : consensus_6194#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 692 fasta sequence [TTTTGGTTCTCCCATGGGCCAGCCAAGATATGAAGAGGCTCTTAAGTTGTGTTCACTGGTGCATGACCTTGAAATTTTGCCCTTTGGTGGCCTTCTCAAATCGGGGAAAGAGGAGCAAATCTTAGTGGAGGGCAGAAGCAACGCATTCAATTAGCTCGTGCATTGTATCACGATGCGGATATTTATCTTTTAGATGACCCTTTCAGCTCTGTCGATGCACATACAGCTACAAGTCTTTTTAATGAATATGTGATGGGAGCTTTGTCGGAAAAGACGGTTCTGCTAGTAACACATCAAGTGGAGTTCTTGCATGCATTTGATTCTGTTCTAGTAAGTATTCATGCTTTCTTGAGCAATTTGCGTTTTGATAACGTCATGATGCCTCAATAACCACTTATATTCTAGTATTAAGTATTCATGCTTTGTTGAGCAATTTGCATTTTGATACTGTCATGACTCATGATGCCTCAATAATCACATATACTCGTGTCCG-GTTCGTTGTTCGCCCATCCACACTCCTCAATAATCTGGTTATTTTGTTAATAGAGAGTAAGATGTTTTTTCCGCAGTTAATGTTTTTTTGAAACCGTAGCCAGGCTAAG-CTGGAGTTATATTAAGGAGAATAGAAAGTATTTTCAATATCATCAA-GGAAGGTGAAAGAGAGAAAAAAAGGAAACATGAAAAAAAAAAAA] [-] EMBL CA762287 [TTTTGGTTCTCCCATGGGCCAGCCAAGATATGAAGAGGCTCTTAAGTTGTGTTCACTGGTGCATGACCTTGAAATTTTGCCCTTTGGTGGCCTTCTCAAATCGGGGAAAGAGGAGCAAATCTTAGTGGAGGGCAGAAGCAACGCATTCAATTAGCTCGTGCATTGTATCACGATGCGGATATTTATCTTTTAGATGACCCTTTCAGCTCTGTCGATGCACATACAGCTACAAGTCTTTTTAATGAATATGTGATGGGAGCTTTGTCGGAAAAGACGGTTCTGCTAGTAACACATCAAGTGGAGTTCTTGCATGCATTTGATTCTGTTCTAGTAAGTATTCATGCTTTCTTGAGCAATTTGCGTTTTGATAACGTCATGATGCCTCAATAACCACTTATATTCTAGTATTAAGTATTCATGCTTTGTTGAGCAATTTGCATTTTGATACTGTCATGACTCATGATGCCTCAATAATCACATATACTCGTGTCCG GTTCGTTGTTCGCCCATCCACACTCCTCAATAATCTGGTTATTTTGTTAATAGAGAGTAAGATGTTTTTTCCGCAGTTAATGTTTTTTTGAAACCGTAGCCAGGCTAAG CTGGAGTTATATTAAGGAGAATAGAAAGTATTTTCAATATCATCAA GGAAGGTGAAAGAGAGAAAAAAAGGAAACATGAAAAAAAAAAAA] [+] EMBL CA763997 [ GCAAATCTTAGTGGAGGGCAGAAGCAACGCATTCAATTAGCTCGTGCATTGTATCACGATGCGGATATTTATCTTTTAGATGACCCTTTCAGCTCTGTCGATGCACATACAGCTACAAGTCTTTTTAATGAATATGTGATGGGAGCTTTGTCGGAAAAGACGGTTCTGCTAGTAACACATCAAGTGGAGTTCTTGCATGCATTTGATTCTGTTCTAGTAAGTATTCATGCTTTCTTGAGCAATTTGCGTTCTGATAACGTCATGATGCCTCAATAACCACTTATATTCTAGTATTAAGTATTCATGCTTTGTTGAGCAATTTGCATTTTGATACTGTCATGACTCATGATGCCTCAATAATCACATATACTCGTGTCCGCTTTCGTTGTTCGCCCATCCACACTCCTCAATAATCTGGTTATTTTGTTAACAGAGAGTAAGATGTTTTTTCCGCAGTTAATGTTTTTTTGAAACCGTAGCCAGGCTAAGCCTGGAGTTATATTAAGGAGAATAGAAAGTATTTACAATATCATCAAGGGAAGGTGAAAGAGAGAAAAAAAGG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6194#0 ------------------CGAGACAAGGGGGAGGGTTGTTCTTCCCTACTATCTCTCCCA 42 consensus_6194#1 TTTTGGTTCTCCCATGGGCCAGCCAAGATATGAAGAGGCTCTTAAGTTGTGT---TCACT 57 * ** **** * * **** * * * ** * consensus_6194#0 CCTCCACCGCCTCCGGCCGC--CTCTCCGGCGATCGCCGACTTCTGCGAGTAGGCGTGTA 100 consensus_6194#1 GGTGCATGACCTTGAAATTTTGCCCTTTGGTGGCCTTCTCAAATCGGGGAAAGAGGAGCA 117 * ** *** * ** ** * * * * * ** * * * consensus_6194#0 TCCCCTTGCGCCTCTTCGCTGATCCTCTTTTGTTCAGCGGCTGCTCTGATTGGTGGGGGA 160 consensus_6194#1 AATCTTAGTGGAGGGCAGAAGCAACGCATTCAATTAGCTCGTGCATTGTATCACGATGCG 177 * * * * * * * * ** * *** *** ** * * * consensus_6194#0 GATGGCTGCACCACTTATAAC------AGGACTTGCGGTG-----GCAGCCGCTGCTCTT 209 consensus_6194#1 GATATTTATCTTTTAGATGACCCTTTCAGCTCTGTCGATGCACATACAGCTACAAGTCTT 237 *** * ** ** ** ** ** ** **** * **** consensus_6194#0 GCCAGTAGATATAGCATCCAAGCTTGGCATGCTTATAAAGCAAGGCCTATAGTTCCCAGG 269 consensus_6194#1 TTTAATGAATATGTGATGGGAGCTTTGTCGGAAAAGACGGTTCTGCTAGTAACACATCAA 297 * * **** ** ***** * * * * * ** ** * consensus_6194#0 ATGCGCAAATTCTATGAAGGTGGTTTTCAACCTGCAATGACCCGAAGGGAAGCTGGTTTA 329 consensus_6194#1 GTGGAGTTCTTGCATGCATTTGATTCTGTTCTAGTAAGTATTC--ATGCTTTCTTGAGCA 355 ** ** *** * ** ** * * * ** * * * * ** * * consensus_6194#0 ATCCTGGGTGTCAGAGAAAATGTCCATCCTGAGAAGG---TTAAAGAGGCACACAAAAAG 386 consensus_6194#1 ATT-TGCGTTTTGATAACGTCATGATGCCTCAATAACCACTTATATTCTAGTATTAAGTA 414 ** ** ** * * * *** * * *** * * ** consensus_6194#0 GTCATGGTT-GCCAATCATCCGGATGCAGGGGGCAGTCATTACCT----TGCTTCGAAGA 441 consensus_6194#1 TTCATGCTTTGTTGAGCAATTTGCATTTTGATACTGTCATGACTCATGATGCCTCAATAA 474 ***** ** * * ** * * * ***** ** *** ** * * consensus_6194#0 TTA-ATGAGGCCAAA---GATGTTTTGCTAGGTAAAACAAA------AGGAGGTGGATCA 491 consensus_6194#1 TCACATATACTCGTGTCCGGTTCGTTGTTCGCCCATCCACACTCCTCAATAATCTGGTTA 534 * * ** * * * *** * * * ** * * * * * * consensus_6194#0 GTCTTTTGA--GTATATAATATGCACTGTTCG---TTCCTTTTTTTTTGAAACCAAAGCC 546 consensus_6194#1 TTTTGTTAATAGAGAGTAAGATGTTTTTTCCGCAGTTAATGTTTTTTTGAAACCGTAGCC 594 * * ** * * *** *** * * ** ** * ************* **** consensus_6194#0 AGGCTAAGCTGGAGNTATATTAAAGGAGAATAGAAAGTATTTACAATATCACCCAAGAAA 606 consensus_6194#1 AGGCTAAGCTGGAGTTATATTAA-GGAGAATAGAAAGTATTTTCAATATCATCAAGGAAG 653 ************** ******** ****************** ******** * * *** consensus_6194#0 NGGGGAAAGAGATAGAACAGGGGAAACAAAGGAAGAAAAGCCACCAAGGGAAAACCTAAA 666 consensus_6194#1 GTGAAAGAGAGA-AAAAAAGGAAACATGAAAAAAAAAAAA-------------------- 692 * * ***** * ** *** * * ** ** **** consensus_6194#0 AGGGAGATGATNAACCCGAAANTTTTGATATACATGAANGNAGAAATAAGCCNTTGGTCC 726 consensus_6194#1 ------------------------------------------------------------ consensus_6194#0 TTGGTNCCTATCNCTAAGTTCCAGCACTTANATGATNAACCCGAAATTTTGATGGGGTTC 786 consensus_6194#1 ------------------------------------------------------------ consensus_6194#0 CAAA 790 consensus_6194#1 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||