cluster # 6195

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Oryza sativa
cluster # 6195 cluster # 6195 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6195#0 length = 658 sequences # 2

consensus_6195#1 length = 571 sequences # 1
consensus_6195#2 length = 161 sequences # 1

consensusID : consensus_6195#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 658
fasta sequence

                              [GTTTTGGTTTGATTCATATGATAGGGACCCAGCTCTAGCCTGGATGGTGATAATAGGGTGAAAACCCTGTGAAAGGAAAAATGATGCATCACTAACCATGAGAAATCAGACTTTCGTTTTCATTTGGTGGAGCATGTAAAGGAGCTGGTGAAACCAATCTGGAAGGAAGGCAATTTGAGTAAAGAGGCTCATAAACTGATTGTGAAAAAATCTGTTGATAAGATTTTTGCTTCACTTGAGCCAATCAGATGCCAGAGACTGAGAAGGCGATAACTACTTATATAACAGCCTCTGCACC-AAGATAGAAAAACTTGTG-AAGGCATATGTTGATCGTCATCGCACATCATGAGATCCAGGCTTCTAATTATGAGCTACAACATTGAAGAGATGGGGTTTGAGCCTGCTGGCCTACC-ATGCGTTTTGTGGCTGTGCTAGATGTTTTGAGTAAGGTACTCTGTTACATGAACCTGTTTGGTTTTGTAGACTTCAGTCTGGGCTCCCTAGCAGCATCTTAACATGGTGGATGTTTAATTTAATATGTTTTTGCATGTGAGCTGAGAGGAGATCTAATGCAACCAAGACAGAATCTTTATTGCATGTGTGGTTAATCTACTGGGTTAAGGAATGATGCTTCGTAA---AAAAAAAAAAAAAAAAAAAA]

[+] EMBL BI798491             [GTTTTGGTTTGATTCATATGATAGGGACCCAGCTCTAGCCTGGATGGTGATAATAGGGTGAAAACCCTGTGAAAGGAAAAATGATGCATCACTAACCATGAGAAATCAGACTTTCGTTTTCATTTGGTGGAGCATGTAAAGGAGCTGGTGAAACCAATCTGGAAGGAAGGCAATTTGAGTAAAGAGGCTCATAAACTGATTGTGAAAAAATCTGTTGATAAGATTTTTGCTTCACTTGAGCCAATCAGATGCCAGAGACTGAGAAGGCGATAACTACTTATATAACAGCCTCTGCACC AAGATAGAAAAACTTGTG AAGGCATATGTTGATCGTCATCGCACATCATGAGATCCAGGCTTCTAATTATGAGCTACAACATTGAAGAGATGGGGTTTGAGCCTGCTGGCCTACC ATGCGTTTTGTGGCTGTGCTAGATGTTTTGAGTAAGGTACTCTGTTACATGAACCTGTTTGGTTTTGTAGACTTCAGTCTGGGCTCCCTAGCAGCATCTTAACATGGTGGATGTTTAATTTAATATGTTTTTGCATGTGAGCTGAGAGGAGATCTAATGCAACCAAGACAGAATCTTTATTGCATGTGTGGTTAATCTACTGGGTTAAGGAATGATGCTTCGTAA   AAAAAA              ]
[+] EMBL AU100813             [                                                                                                                                                                                                                                                                                  TACTTATATACCAGCCTCTGCACCAAAGATAGAAAAACTTGTGAAAGGCATATGTTGATCGTTA CGCACATCATGAGATCCAGGCTTCTAATTATGAGCTACAACATTGAAGAGATGGGGTTTGANCCTGCTGGCCTACCAATGCGTTTTGTTGCTGTGCTAGATGTTTTGAGTAAGGTACTCTGTTACATGAACCTGTTTGGTTTTGTAGACTTCAGTCTGGGCTCCCTAGCAGCATCTTAACATGGTGGATGTTTAATTTAATATGTTTTTGCATGTGANCTGAGAGGAGATCTAATGCAACCAAGACAGAATCTTTATTGCATGTGTGGTTAATCTA TGGGTTAAGGAATGATGCTTC TAATGCAAAAAAAAAAAAAAAAAAAA]




>consensus_6195#0
GTTTTGGTTTGATTCATATGATAGGGACCCAGCTCTAGCCTGGATGGTGATAATAGGGTG
AAAACCCTGTGAAAGGAAAAATGATGCATCACTAACCATGAGAAATCAGACTTTCGTTTT
CATTTGGTGGAGCATGTAAAGGAGCTGGTGAAACCAATCTGGAAGGAAGGCAATTTGAGT
AAAGAGGCTCATAAACTGATTGTGAAAAAATCTGTTGATAAGATTTTTGCTTCACTTGAG
CCAATCAGATGCCAGAGACTGAGAAGGCGATAACTACTTATATAACAGCCTCTGCACCAA
GATAGAAAAACTTGTGAAGGCATATGTTGATCGTCATCGCACATCATGAGATCCAGGCTT
CTAATTATGAGCTACAACATTGAAGAGATGGGGTTTGAGCCTGCTGGCCTACCATGCGTT
TTGTGGCTGTGCTAGATGTTTTGAGTAAGGTACTCTGTTACATGAACCTGTTTGGTTTTG
TAGACTTCAGTCTGGGCTCCCTAGCAGCATCTTAACATGGTGGATGTTTAATTTAATATG
TTTTTGCATGTGAGCTGAGAGGAGATCTAATGCAACCAAGACAGAATCTTTATTGCATGT
GTGGTTAATCTACTGGGTTAAGGAATGATGCTTCGTAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_6195#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 571
fasta sequence

                              [AGAGGACGAGACAAGGGGGGTGAAAACCTGTGAAAGGAAAAATGATGCATCACTTAACAATGAGAAATCAGACTTTCGTTTTCATTTGGTGGAGCATGTAAAGGAGCTGGTGAAACCAATCTGGAAGGAAGGCAATTTGAGTAAAGAGGCTCATAAACTGATTGTGAAAAAATCTGTTGATAAGATTTTTGCTTCACTTGAGCCAAATCAGATGCCAGAGACTGAGAAGGCGATAACTACTTATATAACAGCCTCTGCACCAAAGATAGAAAAACTTGTGAAGGCATATGTTGATCGTTATCGCACATCATGAGATCCAGGCTTCTAATTATGAGCTACAACATTGAAGAGATGGGGTTTGAGCCTGCTGGCCTACCAATGCGTTTTGTTGCTGTGCTAGACGTTTTGAGTAAGGTACTCTGTTACATGAACCTGTTGGTTTTGTAGACTTCAGTCTGGGCTCCCTAGCAGCATCTTAACATGGTGGATGTTTAATTTAATATGTTTTTGCATGTGAGCTGAGAGGAGATCTAATGCAACCAAGACAGAATCTTTATTGCAAAAAAAAAAA]

[-] EMBL CA762246             [AGAGGACGAGACAAGGGGGGTGAAAACCTGTGAAAGGAAAAATGATGCATCACTTAACAATGAGAAATCAGACTTTCGTTTTCATTTGGTGGAGCATGTAAAGGAGCTGGTGAAACCAATCTGGAAGGAAGGCAATTTGAGTAAAGAGGCTCATAAACTGATTGTGAAAAAATCTGTTGATAAGATTTTTGCTTCACTTGAGCCAAATCAGATGCCAGAGACTGAGAAGGCGATAACTACTTATATAACAGCCTCTGCACCAAAGATAGAAAAACTTGTGAAGGCATATGTTGATCGTTATCGCACATCATGAGATCCAGGCTTCTAATTATGAGCTACAACATTGAAGAGATGGGGTTTGAGCCTGCTGGCCTACCAATGCGTTTTGTTGCTGTGCTAGACGTTTTGAGTAAGGTACTCTGTTACATGAACCTGTTGGTTTTGTAGACTTCAGTCTGGGCTCCCTAGCAGCATCTTAACATGGTGGATGTTTAATTTAATATGTTTTTGCATGTGAGCTGAGAGGAGATCTAATGCAACCAAGACAGAATCTTTATTGCAAAAAAAAAAA]




>consensus_6195#1
AGAGGACGAGACAAGGGGGGTGAAAACCTGTGAAAGGAAAAATGATGCATCACTTAACAA
TGAGAAATCAGACTTTCGTTTTCATTTGGTGGAGCATGTAAAGGAGCTGGTGAAACCAAT
CTGGAAGGAAGGCAATTTGAGTAAAGAGGCTCATAAACTGATTGTGAAAAAATCTGTTGA
TAAGATTTTTGCTTCACTTGAGCCAAATCAGATGCCAGAGACTGAGAAGGCGATAACTAC
TTATATAACAGCCTCTGCACCAAAGATAGAAAAACTTGTGAAGGCATATGTTGATCGTTA
TCGCACATCATGAGATCCAGGCTTCTAATTATGAGCTACAACATTGAAGAGATGGGGTTT
GAGCCTGCTGGCCTACCAATGCGTTTTGTTGCTGTGCTAGACGTTTTGAGTAAGGTACTC
TGTTACATGAACCTGTTGGTTTTGTAGACTTCAGTCTGGGCTCCCTAGCAGCATCTTAAC
ATGGTGGATGTTTAATTTAATATGTTTTTGCATGTGAGCTGAGAGGAGATCTAATGCAAC
CAAGACAGAATCTTTATTGCAAAAAAAAAAA

consensusID : consensus_6195#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 161
fasta sequence

                              [AGATGGGTTTGCGTCGTGGCCTACCAATGCGTTTTGTTCGTGTCGTAGATGTTTTGAGTAAGGTCATCTGTTACATGAACCTGTTTGGTTTGTAGACTTCAGTCTGGGCTCCCTAGCAGCATCTTAACATGGTGGATGTTTAATTTAATATGTTTTTGCAT]

[-] EMBL D42220               [AGATGGGTTTGCGTCGTGGCCTACCAATGCGTTTTGTTCGTGTCGTAGATGTTTTGAGTAAGGTCATCTGTTACATGAACCTGTTTGGTTTGTAGACTTCAGTCTGGGCTCCCTAGCAGCATCTTAACATGGTGGATGTTTAATTTAATATGTTTTTGCAT]




>consensus_6195#2
AGATGGGTTTGCGTCGTGGCCTACCAATGCGTTTTGTTCGTGTCGTAGATGTTTTGAGTA
AGGTCATCTGTTACATGAACCTGTTTGGTTTGTAGACTTCAGTCTGGGCTCCCTAGCAGC
ATCTTAACATGGTGGATGTTTAATTTAATATGTTTTTGCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6195#0      GTTTTGGTTTGATTCATATGATAGGGACCCAGCTCTAGCCTGGATGGTGATAATAGGGTG 60
consensus_6195#1      --------------------------------------AGAGGACGA-GACAAGGGGGGT 21
consensus_6195#2      ------------------------------------------------------------
                                                                                  

consensus_6195#0      AAAACCCTGTGAAAGGAAAAATGATGCATCACT-AACCATGAGAAATCAGACTTTCGTTT 119
consensus_6195#1      GAAAACCTGTGAAAGGAAAAATGATGCATCACTTAACAATGAGAAATCAGACTTTCGTTT 81
consensus_6195#2      ------------------------------------------------------------
                                                                                  

consensus_6195#0      TCATTTGGTGGAGCATGTAAAGGAGCTGGTGAAACCAATCTGGAAGGAAGGCAATTTGAG 179
consensus_6195#1      TCATTTGGTGGAGCATGTAAAGGAGCTGGTGAAACCAATCTGGAAGGAAGGCAATTTGAG 141
consensus_6195#2      ------------------------------------------------------------
                                                                                  

consensus_6195#0      TAAAGAGGCTCATAAACTGATTGTGAAAAAATCTGTTGATAAGATTTTTGCTTCACTTGA 239
consensus_6195#1      TAAAGAGGCTCATAAACTGATTGTGAAAAAATCTGTTGATAAGATTTTTGCTTCACTTGA 201
consensus_6195#2      ------------------------------------------------------------
                                                                                  

consensus_6195#0      GCCAA-TCAGATGCCAGAGACTGAGAAGGCGATAACTACTTATATAACAGCCTCTGCACC 298
consensus_6195#1      GCCAAATCAGATGCCAGAGACTGAGAAGGCGATAACTACTTATATAACAGCCTCTGCACC 261
consensus_6195#2      ------------------------------------------------------------
                                                                                  

consensus_6195#0      AA-GATAGAAAAACTTGTGAAGGCATATGTTGATCGTCATCGCACATCATGAGATCCAGG 357
consensus_6195#1      AAAGATAGAAAAACTTGTGAAGGCATATGTTGATCGTTATCGCACATCATGAGATCCAGG 321
consensus_6195#2      ------------------------------------------------------------
                                                                                  

consensus_6195#0      CTTCTAATTATGAGCTACAACATTGAAGAGATGGGGTTTGAGCCTGCTGGCCTACCA-TG 416
consensus_6195#1      CTTCTAATTATGAGCTACAACATTGAAGAGATGGGGTTTGAGCCTGCTGGCCTACCAATG 381
consensus_6195#2      ----------------------------AGATGGGTTT---GCGTCGTGGCCTACCAATG 29
                                                  ******* **   ** *  ********** **

consensus_6195#0      CGTTTTGTGGCTGTGCTAGATGTTTTGAGTAAGGTACTCTGTTACATGAACCTGTTTGGT 476
consensus_6195#1      CGTTTTGTTGCTGTGCTAGACGTTTTGAGTAAGGTACTCTGTTACATGAACCTGTT-GGT 440
consensus_6195#2      CGTTTTGTTCGTGTCGTAGATGTTTTGAGTAAGGTCATCTGTTACATGAACCTGTTTGGT 89
                      ********   ***  **** **************  ******************* ***

consensus_6195#0      TTTGTAGACTTCAGTCTGGGCTCCCTAGCAGCATCTTAACATGGTGGATGTTTAATTTAA 536
consensus_6195#1      TTTGTAGACTTCAGTCTGGGCTCCCTAGCAGCATCTTAACATGGTGGATGTTTAATTTAA 500
consensus_6195#2      TT-GTAGACTTCAGTCTGGGCTCCCTAGCAGCATCTTAACATGGTGGATGTTTAATTTAA 148
                      ** *********************************************************

consensus_6195#0      TATGTTTTTGCATGTGAGCTGAGAGGAGATCTAATGCAACCAAGACAGAATCTTTATTGC 596
consensus_6195#1      TATGTTTTTGCATGTGAGCTGAGAGGAGATCTAATGCAACCAAGACAGAATCTTTATTGC 560
consensus_6195#2      TATGTTTTTGCAT----------------------------------------------- 161
                      *************                                               

consensus_6195#0      ATGTGTGGTTAATCTACTGGGTTAAGGAATGATGCTTCGTAAAAAAAAAAAAAAAAAAAA 656
consensus_6195#1      AAAAAAAAAAA------------------------------------------------- 571
consensus_6195#2      ------------------------------------------------------------
                                                                                  

consensus_6195#0      AA 658
consensus_6195#1      --
consensus_6195#2      --