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Oryza sativa
cluster # 6201 cluster # 6201       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6201#0 length = 2246 sequences # 4  

consensusID : consensus_6201#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 2246
fasta sequence
                              [CTCAGGATCTGCTCCGGGGAGATCAGCGGCGAGGACGGGGCCCATTCCGTCAACTTCGCCGAAGCTGCACTACTACTGCAGGGATCAGTCCAGGTTTACAGCCGCAAGGTGGAGTATTTGTACACCTTGGTGCTCAACGCGCTGGAATTTCTCTCGCAAAAGAAGCAAGATCAGGAAAATAGCTCAGCTCAAGCTAATGAAAGTGATCGTAGCACAGTACCGAATGAGGAAGATGATGTGTTTTCAGGGCTAGATGATGTCCCAGTGGAAGCAAGGACCACTTTGGATAACAATATTGATCGAGATGACTTGCTAAAAAAAAAATGTGAGGCCACCAGCAAATCTGCTGGTGTTTGAAGGAGACTGTATGGATAGCGAAGCGAGTGAGCTAGAATTATATTTGTTAGCAACATGTGGCTTTTTCGGAGATTTCCTCCTGTTGGATCCATGTGATGCACCAGCTGTTTCTGACTTTTTGCAAGGAAAACAATCTGCCAAAGAAGATATATTCGCTGGCAGGGGCAGCTCTGCACGGTCTAAAAGCCGAACCAATGTTTTCTGTTCCCCAAATGGAAGATCTGGGGGCACCGGTCGTAGACCTACCCCTGGAAAAGTCCAAGAGGGAAATCCAGATCAAACTCAGGAGAGCAATCCCGACCAATCTCAAGAAATGAATGCAAATCAAACCCAAGAACATATCGATGACTTAAATGTAAATGATGATCATTGGTCTGTTCACCCTGCTGACCATGATTTTCCTGATAATGACATGCCCCACCCAGATGATGCAGACGCTGGGTGTGTGGATGATTCTGATGATGATGATGATCCATGGAGGCCATTGAATCCCCATGAACCTGGCAACCTAAAGATCAGGACTTGTAGGAAAGTAAAAAGTTTTGCAAGGCAGGTCATTGGTGCTCCCAAAAGGAACATTATTGCATCTCTGTTTCCTATGGAAAAGATGGATGGTGCATCCTTTAAAGTACATCTATCTCAGCAGGAAACACATCATGTTCCTGAACCTCCTCCTCTGTACGAAAAGCTTATGAGGTCACTTGAACATGGAGAACCAGAAAGTCACCTGTTTGGAGATTTGAAGGATGGCCATGAGCCGGATATTGGTGTAAATGACTTTGATATTCATGAGCCAGATATGCCAGATGATGTCTGTGATATGGATGTTGATATGGACATACCAACATACCCTGATAAGAATAATGATGCAACATTGGATGGAGCTCAAGGTACACAGGATAGCATGGATGCGCATGAAAGCCTTGAAGATTTGTGTCGGTCACATCTGGATGCTCTCCTTGCTAGCATAGCTGAGGCTGAACAGCAGACTGAGCTGGATGCACGAGTTTCGACATGGAAAGAACGAATTGAGCATGCCTTGGAAGAGCAGGATAGAAACCCACCTTTTGATATTGGTTCTTATGGAGAGCAAATCATCGACACGCTCTCATCAAGAACCGAGAATGCAGGGATTGCATCATTCAGTGAGATTGTTAGTGGCAAGCCAAAGTATGAGGTTGCAAGGACATTCTCTGCGCTTCTCCAGCTGGTGAACGGTAGAAGTGTTGATCTGGACAAAGGACAAACTACGAATGGGTTGGTATGTCACACGGCTTCCAA-CCCATTCCATGTAAGGCTCATTGGTCCCAACCAGAGACCGG-AAATCGAGGCACGTTT--CGCGCGAAAGAG-GGTCAATTCGCCTTCACGAAATAAAGG-CAGTGGCGAACCCTCTCCAGCGCAACAGAAGT-CGCCTAAGAAACATGGGCA-TAAAAATGGCAAGGTT-CCAGTG--AAGA-CGTCAATTAAA-CTGACTCCAGATGGAAAGCGAAGGCGGAGGTCAACTCAAATGCTGCGCCCGATCAATCTAGAATACAGCTGATGAAGATGGAGGGCAGACTGACTCATGAGCATAACAATTATGATTCTCTTCTTCCTGTAACTTGAGTGTTGTCTAGCAACTATGAGTTATGACATAGGCCTAGCTAGATGGGGTGTACATGTACAATAGATCGTTGTATTGTGCTTGCCTGTATGTAATGTTATCTAGGTCTGTTGCTAGAATTGCCCTTATATGTCATGTCTGTAAGGGGGACATAGGCAAATACAGCTGATAGATTTCTTTCGTTCTACTTCAATAACCAAACTACCATCTGGTTAGCCTATTGTTTTGTACATGAGATATTCCTGTGCCTTTTGAGTTTTGAAAAAAAAAACAGAAAAAAAAAAAAAAA]

[+] EMBL AK121812             [CTCAGGATCTGCTCCGGGGAGATCAGCGGCGAGGACGGGGCCCATTCCGTCAACTTCGCCGAAGCTGCACTACTACTGCAGGGATCAGTCCAGGTTTACAGCCGCAAGGTGGAGTATTTGTACACCTTGGTGCTCAACGCGCTGGAATTTCTCTCGCAAAAGAAGCAAGATCAGGAAAATAGCTCAGCTCAAGCTAATGAAAGTGATCGTAGCACAGTACCGAATGAGGAAGATGATGTGTTTTCAGGGCTAGATGATGTCCCAGTGGAAGCAAGGACCACTTTGGATAACAATATTGATCGAGATGACTTGCTAAAAAAAAAATGTGAGGCCACCAGCAAATCTGCTGGTGTTTGAAGGAGACTGTATGGATAGCGAAGCGAGTGAGCTAGAATTATATTTGTTAGCAACATGTGGCTTTTTCGGAGATTTCCTCCTGTTGGATCCATGTGATGCACCAGCTGTTTCTGACTTTTTGCAAGGAAAACAATCTGCCAAAGAAGATATATTCGCTGGCAGGGGCAGCTCTGCACGGTCTAAAAGCCGAACCAATGTTTTCTGTTCCCCAAATGGAAGATCTGGGGGCACCGGTCGTAGACCTACCCCTGGAAAAGTCCAAGAGGGAAATCCAGATCAAACTCAGGAGAGCAATCCCGACCAATCTCAAGAAATGAATGCAAATCAAACCCAAGAACATATCGATGACTTAAATGTAAATGATGATCATTGGTCTGTTCACCCTGCTGACCATGATTTTCCTGATAATGACATGCCCCACCCAGATGATGCAGACGCTGGGTGTGTGGATGATTCTGATGATGATGATGATCCATGGAGGCCATTGAATCCCCATGAACCTGGCAACCTAAAGATCAGGACTTGTAGGAAAGTAAAAAGTTTTGCAAGGCAGGTCATTGGTGCTCCCAAAAGGAACATTATTGCATCTCTGTTTCCTATGGAAAAGATGGATGGTGCATCCTTTAAAGTACATCTATCTCAGCAGGAAACACATCATGTTCCTGAACCTCCTCCTCTGTACGAAAAGCTTATGAGGTCACTTGAACATGGAGAACCAGAAAGTCACCTGTTTGGAGATTTGAAGGATGGCCATGAGCCGGATATTGGTGTAAATGACTTTGATATTCATGAGCCAGATATGCCAGATGATGTCTGTGATATGGATGTTGATATGGACATACCAACATACCCTGATAAGAATAATGATGCAACATTGGATGGAGCTCAAGGTACACAGGATAGCATGGATGCGCATGAAAGCCTTGAAGATTTGTGTCGGTCACATCTGGATGCTCTCCTTGCTAGCATAGCTGAGGCTGAACAGCAGACTGAGCTGGATGCACGAGTTTCGACATGGAAAGAACGAATTGAGCATGCCTTGGAAGAGCAGGATAGAAACCCACCTTTTGATATTGGTTCTTATGGAGAGCAAATCATCGACACGCTCTCATCAAGAACCGAGAATGCAGGGATTGCATCATTCAGTGAGATTGTTAGTGGCAAGCCAAAGTATGAGGTTGCAAGGACATTCTCTGCGCTTCTCCAGCTGGTGAACGGTAGAAGTGTTGATCTGGACAAAGGACAAACTACGAATGGGTTGGTATGTCACACGGCTTCCAA CCCATTCCATGTAAGGCTCATTGGTCCCAACCAGAGACCGG AAATCGAGGCACGTTT  CGCGCGAAAGAG GGTCAATTCGCCTTCACGAAATAAAGG CAGTGGCAAACCCTCTCCAGCGCAACAGAAGT CGCCTAAGAAACATGGGCA TAAAAATGGCAAGGTT CCAGTG  AAGA CGTCAATTAAA CTGACTCCAGATGGAAAGCGAAGGCGGAGGTCAACTCAAATGCTGCGCCCGATCAATCTAGAATACAGCTGATGAAGATGGAGGGCAGACTGACTCATGAGCATAACAATTATGATTCTCTTCTTCCTGTAACTTGAGTGTTGTCTAGCAACTATGAGTTATGACATAGGCCTAGCTAGATGGGGTGTACATGTACAATAGATCGTTGTATTGTGCTTGCCTGTATGTAATGTTATCTAGGTCTGTTGCTAGAATTGCCCTTATATGTCATGTCTGTAAGGGGGACATAGGCAAATACAGCTGATAGATTTCTTTCGTTCTACTTCAATAACCAAACTACCATC                                                                                ]
[+] EMBL CF323408             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AGCCGAACCAATGTTTTCTGTTCCCCAAATGGAAGATCTGGGGGCACCGGTCGTAGACCTACCCCTGGAAAAGTCCAAGAGGGAAATCCAGATCAAACTCAGGAGAGCAATCCCGACCAATCTCAAGAAATGAATGCAAATCAAACCCAAGAACATATCGATGACTTAAATGTAAATGATGATCATTGGTCTGTTCACCCTGCTGACCATGATTTTCCTGATAATGACATGCCCCACCCAGATGATGCAGACGCTGGGTGTGTGGATGATTCTGATGATGATGATGATCCATGGAGGCCATTGAATCCCCATGAACCTGGCAACCTAAAGATCAGGACTTGTAGGAAAGTAAAAAGTTTTGCAAGGCAGGTCATTGGTGCTCCCAAAAGGAACATTATTGCATCTCTGTTTCCTATGGAAAAGATGGATGGTGCATCCTTTAAAGTACATCTATCTCAGCAGGAAACACATCATGTTCCTGAACCTCCTCCTCTGTACGAAAAGCTTATGAGGTCACTTGAACATGGAGAACCAGAAAGTCACCTGTTTGGAGATTTGAAGGATGGCCATGAGCCGGATATTGGTGTAAATGACTTTGATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CA764966             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           aggggGTCTGTGATATGGATGTTGATATGGACATACCAACATACCCTGATAAGAATAATGATGCAACATTGGATGGAGCTCAAGGTACACAGGATAGCATGGATGCGCATGAAAGCCTTGAAGATTTGTGTCGGTCACATCTGGATGCTCTCCTTGCTAGCATAGCTGAGGCTGAACAGCAGACTGAGCTGGATGCACGAGTTTCGACATGGAAGGAACGAATTGAGCACGCCTTGGAAGAGCAGGATAGAAACCCACCTTTTGATATTGGTTCTTATGGAGAGCAAATCATCGGCACGCTCTCATCAAGAACCGAGAATGCAGGGATTGCATCATTCAGTGAGATTGTTAGTGGCAAGCCAAAGTATGAGGTTGCAAGGACATTCTCTGCGCTTCTCCAGCTGGTGAACGGTAGAAGTGTTGATCTGGACAAAGGACAAACTACGAATGGGTTGGTATGTCACACGGCTTCCAA CCCATTCCATGTAAGGCTCATTGGTCCCAACCAGAGACCGGAAAATCGAGGCACGTTTTCCGCGCGAAAGAGNNNCCAATTCGCCTTCACGAAATAAAGGCCAGTGGCGAACCCTCTCCAGCGCAACAGAAGTCCCCCTAANAAANATGGGCATTAAAAATGGNAAGGTTCCCAGCGGAAAGACCGCCANTTAAACCTGAacttcc                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CA761997             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ccAACTACGAATGGGTTGGTATGTCACACGGCTTTCAACCCCATTCCATGTAAGGCTCATTGGTCCCAACCAGAGACCGG AAATCGAGGCACGTTT  CGCGCGAAAGAG GGTCAATTCGCCTTCACGAAATAAAGG CAGTGGCGAACCCTCTCCAGCGCAACAGAAGT CGCCTAAGAAACATGGGCA TAAAAATGGCAAGGTT CCAGTG  AAGA CGTCAATTAAA CTGACTCCAGATGGAAAGCGAAGGCGGAGGCCAACTCAAATGCTGCGCCCGATCAATCTAGAATCCAGCTGATGAAGATGGAGGGCAGACTGACTCATGAGCATAACAATTATGATTCTCTTCTTCCTGTAACTTGAGTGTTGTCTAGCAACTATGAGTTATGACATAGGCCTAGCTAGATGGGGTGTACATGTACAATAGATCGTTGTATTGTGCTTGCCTGTATGTAATGTTATCTAGGTCTGTTGCTAGAATTGCCCTTATATGTCATGTCTGTAAGGGGGACATAGGCAAATACAGCTGATAGATTTCTTTCGTTCTACTTCAATAACCAAACTACCATCTGGTTAGCCTATTGTTTTGTACATGAGATATTCCTGTGCCTTTTGAGTTTTGAAAAAAAAAACAGAAAAAAAAAAAAAAA]


>consensus_6201#0 CTCAGGATCTGCTCCGGGGAGATCAGCGGCGAGGACGGGGCCCATTCCGTCAACTTCGCC GAAGCTGCACTACTACTGCAGGGATCAGTCCAGGTTTACAGCCGCAAGGTGGAGTATTTG TACACCTTGGTGCTCAACGCGCTGGAATTTCTCTCGCAAAAGAAGCAAGATCAGGAAAAT AGCTCAGCTCAAGCTAATGAAAGTGATCGTAGCACAGTACCGAATGAGGAAGATGATGTG TTTTCAGGGCTAGATGATGTCCCAGTGGAAGCAAGGACCACTTTGGATAACAATATTGAT CGAGATGACTTGCTAAAAAAAAAATGTGAGGCCACCAGCAAATCTGCTGGTGTTTGAAGG AGACTGTATGGATAGCGAAGCGAGTGAGCTAGAATTATATTTGTTAGCAACATGTGGCTT TTTCGGAGATTTCCTCCTGTTGGATCCATGTGATGCACCAGCTGTTTCTGACTTTTTGCA AGGAAAACAATCTGCCAAAGAAGATATATTCGCTGGCAGGGGCAGCTCTGCACGGTCTAA AAGCCGAACCAATGTTTTCTGTTCCCCAAATGGAAGATCTGGGGGCACCGGTCGTAGACC TACCCCTGGAAAAGTCCAAGAGGGAAATCCAGATCAAACTCAGGAGAGCAATCCCGACCA ATCTCAAGAAATGAATGCAAATCAAACCCAAGAACATATCGATGACTTAAATGTAAATGA TGATCATTGGTCTGTTCACCCTGCTGACCATGATTTTCCTGATAATGACATGCCCCACCC AGATGATGCAGACGCTGGGTGTGTGGATGATTCTGATGATGATGATGATCCATGGAGGCC ATTGAATCCCCATGAACCTGGCAACCTAAAGATCAGGACTTGTAGGAAAGTAAAAAGTTT TGCAAGGCAGGTCATTGGTGCTCCCAAAAGGAACATTATTGCATCTCTGTTTCCTATGGA AAAGATGGATGGTGCATCCTTTAAAGTACATCTATCTCAGCAGGAAACACATCATGTTCC TGAACCTCCTCCTCTGTACGAAAAGCTTATGAGGTCACTTGAACATGGAGAACCAGAAAG TCACCTGTTTGGAGATTTGAAGGATGGCCATGAGCCGGATATTGGTGTAAATGACTTTGA TATTCATGAGCCAGATATGCCAGATGATGTCTGTGATATGGATGTTGATATGGACATACC AACATACCCTGATAAGAATAATGATGCAACATTGGATGGAGCTCAAGGTACACAGGATAG CATGGATGCGCATGAAAGCCTTGAAGATTTGTGTCGGTCACATCTGGATGCTCTCCTTGC TAGCATAGCTGAGGCTGAACAGCAGACTGAGCTGGATGCACGAGTTTCGACATGGAAAGA ACGAATTGAGCATGCCTTGGAAGAGCAGGATAGAAACCCACCTTTTGATATTGGTTCTTA TGGAGAGCAAATCATCGACACGCTCTCATCAAGAACCGAGAATGCAGGGATTGCATCATT CAGTGAGATTGTTAGTGGCAAGCCAAAGTATGAGGTTGCAAGGACATTCTCTGCGCTTCT CCAGCTGGTGAACGGTAGAAGTGTTGATCTGGACAAAGGACAAACTACGAATGGGTTGGT ATGTCACACGGCTTCCAACCCATTCCATGTAAGGCTCATTGGTCCCAACCAGAGACCGGA AATCGAGGCACGTTTCGCGCGAAAGAGGGTCAATTCGCCTTCACGAAATAAAGGCAGTGG CGAACCCTCTCCAGCGCAACAGAAGTCGCCTAAGAAACATGGGCATAAAAATGGCAAGGT TCCAGTGAAGACGTCAATTAAACTGACTCCAGATGGAAAGCGAAGGCGGAGGTCAACTCA AATGCTGCGCCCGATCAATCTAGAATACAGCTGATGAAGATGGAGGGCAGACTGACTCAT GAGCATAACAATTATGATTCTCTTCTTCCTGTAACTTGAGTGTTGTCTAGCAACTATGAG TTATGACATAGGCCTAGCTAGATGGGGTGTACATGTACAATAGATCGTTGTATTGTGCTT GCCTGTATGTAATGTTATCTAGGTCTGTTGCTAGAATTGCCCTTATATGTCATGTCTGTA AGGGGGACATAGGCAAATACAGCTGATAGATTTCTTTCGTTCTACTTCAATAACCAAACT ACCATCTGGTTAGCCTATTGTTTTGTACATGAGATATTCCTGTGCCTTTTGAGTTTTGAA AAAAAAAACAGAAAAAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)