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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6202#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 850 fasta sequence
[CCCCCCGCCGGAGTCCCACCATTAGGGGCTTCTCCGATCGGCAGCGAGACGCGCCCTCACCCTCGTCCTCGCCGCCGCCGCCGCCCCATGAGACGACGCCCGCTGTGAGAGCTCCCCTTCCCTTCCTCTCTACCCTTCACTCACTCCCGCGGCCCCGCACCGTTTGTTCGTTCCCTTGCTCCGTTGCGCGCCTCGCCTCTGGATCCCACTAGGACAGTGTCCTGATGGAGAGTGGAGACCTAGAGCTCAGACATCGTAGCGTGTTCCTTCTGCTACTTCGCTTTTGTGCTCGTTGCTCCCCAAATTTTGAGCTCTTCGGCTTAATTTGAGGTTTCCTACTTTCCTCTTTCAGATGTAGTAGTAACTATCTAGCACGATAGCTATGCTTTTATTTTGGAAATTACATCTCATGGGGAGTGGTTAAGCAGGCCGAAATTCCTGGATTTTGTAAACTGTATTAATTTGAGTGCTTGGGCCTGAAATGCCTGCCGTGACTATCGTCGGCATGATCGCACTCATCTGGGTTGCTGTCATCAGAATATAGGCTAGTAATTTGTTTGAATTGCAAATTTGCAATGATTCACTGCTAGACCCAAGACCCAACAGTTCTTGCAAATGACTATTGTGCTGACTCTGATTTATGCTAGTACATTTCTTTTCAAGCTGTTCGTGTTCATGGATATACCCATGGTGTAAGAGGGAAGTATTATTTTTCCTCATTCATCTTGATTCTTCAAATAACTGAAAGGCATTAATAACCCGTGACGGATCAATGCACTACTGGAGTAGCTAGGGACTTACCTTTCTAATTAGTATATCCATGAAATAAGTTTATCGTTGATTTTGTTAT]
[+] EMBL CB624380 [CCCCCCGCCGGAGTCCCACCATTAGGGGCTTCTCCGATCGGCAGCGAGACGCGCCCTCACCCTCGTCCTCGCCGCCGCCGCCGCCCCATGAGACGACGCCCGCTGTGAGAGCTCCCCTTCCCTTCCTCTCTACCCTTCACTCACTCCCGCGGCCCCGCACCGTTTGTTCGTTCCCTTGCTCCGTTGCGCGCCTCGCCTCTGGATCCCACTAGGACAGTGTCCTGATGGAGAGTGGAGACCTAGAGCTCAGACATCGTAGCGTGTTCCTTCTGCTACTTCGCTTTTGTGCTCGTTGCTCCCCAAATTTTGAGCTCTTCGGCTTAATTTGAGGTTTCCTACTTTCCTCTTTCAGATGTAGTAGTAACTATCTAGCACGATAGCTATGCTTTTATTTTGGAAATTACATCTCATGGGGAGTGGTTAAGCAGGCCGAAATTCCTGGATTTTGTAAACTGTATTAATTTGAGTGCTTGGGCCTGAAATGCCTGCCGTGACTATCGTCGGCATGATCGCACTCATCTGGGTTGCTGTCATCAGAATATAGGCTAGTAATTTGTTTGAATTGCAAATTTGCAATGATTCACTGCTAGACCCAAGACCCAACAGTTCTTGCAAATGACTATTGTGCTGACTCTGATTTATGCTAGTACATTTCTTTTCAAGCTGTTCGTGTTCATGGATATACCCATGGTGTAAGAGGGAAGTATTATTTTTCCTCATTCATCTTGATTCTTCAAATAACTGAAAGGCATTAATAACCCGTGACGGATCAATGCACTACTGGAGTAGCTAGGGACTTACCTTTCTAATTAGTATATCCATGAAATAAGTTTATCGTTGATTTTGTTAT]
consensusID : consensus_6202#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 767 fasta sequence
[CCTTTAATAAAACAATAAAAAAAACATATTTTATGAACAAAGCAACATATATGCTTACATTGTAAACACATATGTAAATTATAACTGAATAGACATGTGTTCTAAAAAAAATAACTGAATAGACATACAAAGGTCTACTTATGAGTAAAGAAAATGAATTTAATCCTGATAAACCAATGTTCTTTTAATCGACAAAGCCTTGTCCTTTGCTTTGACTATATCACTATTCTATACAGACTAACACTACATCATTTCTAGGAGAAATGACTACCGGTACGATCTGGAATCGCACATCCCACTGGATTGTTATACATGGTTCGTCGGCTTCTCGCCTTATCAATCATCCATCATCTGCTGCCTTTGGATCTCACCAATATATGATGTCAAAGAAGATCCACAAGAATTGGCCGTCCTATTATTGACACGGCATTGCATCAATTGTTGCTGAAGATTCTGGATGTGCTCATTCAATAGCCGAATCATCTTTTCTTGAGATAAGATTATCTTTTCCTTGACAAGATCTCCTCTACTTGAAATATGTTTCTGCTTGTGAGACGTAAATTCCAACTCATTAACAAGTTGTTGCTTCCATTCAAGCTGGGATGTGACTATAAGTACGAAAAGCAAAAAAATAAGCAGTGCACACCTTGACATCATTGTGTTTTAGAGGTAAACCTATAAAAATAATCATCAAGTATTTCCCATCAGACATCACCATTGGCAAACTATAAAACTAGTTTCAGTTGAATTTACTTAAAAATAGTAAT]
[+] EMBL CB624379 [CCTTTAATAAAACAATAAAAAAAACATATTTTATGAACAAAGCAACATATATGCTTACATTGTAAACACATATGTAAATTATAACTGAATAGACATGTGTTCTAAAAAAAATAACTGAATAGACATACAAAGGTCTACTTATGAGTAAAGAAAATGAATTTAATCCTGATAAACCAATGTTCTTTTAATCGACAAAGCCTTGTCCTTTGCTTTGACTATATCACTATTCTATACAGACTAACACTACATCATTTCTAGGAGAAATGACTACCGGTACGATCTGGAATCGCACATCCCACTGGATTGTTATACATGGTTCGTCGGCTTCTCGCCTTATCAATCATCCATCATCTGCTGCCTTTGGATCTCACCAATATATGATGTCAAAGAAGATCCACAAGAATTGGCCGTCCTATTATTGACACGGCATTGCATCAATTGTTGCTGAAGATTCTGGATGTGCTCATTCAATAGCCGAATCATCTTTTCTTGAGATAAGATTATCTTTTCCTTGACAAGATCTCCTCTACTTGAAATATGTTTCTGCTTGTGAGACGTAAATTCCAACTCATTAACAAGTTGTTGCTTCCATTCAAGCTGGGATGTGACTATAAGTACGAAAAGCAAAAAAATAAGCAGTGCACACCTTGACATCATTGTGTTTTAGAGGTAAACCTATAAAAATAATCATCAAGTATTTCCCATCAGACATCACCATTGGCAAACTATAAAACTAGTTTCAGTTGAATTTACTTAAAAATAGTAAT]
consensusID : consensus_6202#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 766 fasta sequence
[TCTCCCCTCTCCTCACGCCGCCGCCGGCCGTGTCGCCGGAGTCCCAACGATCCAGGGGCTTCTCCGATCGGCAGCGAGACGCGCCCTCACCCTCGTCCTCGCCGCCGCCGCCGCCCCATGAGACGACGTCCGCTGTTTACCTCTAAAACACAATGATGTCAAGGTCTGCACTGCTTATTTTTCTGCTTTTTGTACTTATAGTCACATCCCAGCTTGAATGGAAGCAACAACTTGTTAATGAGTTGGAATCTACGTCTCACAAGCAGAAACATATTTCAAGTAGAGGAGAACTTGTCAAGGAAAAGATAATCTTATCTCAAGAAAAGATGATTCGGCTATTGAATGAGCACATCCAGAATCTTCAGCAACAATTGCTGCAATGCCGTGTCAATAATAGGACGGCCAATTCTTCTGGATCTTCTTTGACATCATATATTGGTGAGATCCAAAGGCAGCAGATGATGGATGATTGATAAGGCGAGAAGCCGACGAACCATGTATAACAATCCAGTGGGATGTGCGATTCCAGATCGTACCGGTAGTCATTTCTCCTAGAAATGATGTAGTGTTAGTCTGTATAGAATAGTGATATAGTCAAAGCAAAGGACAAGGCTTTGTCGATTAAAAGAACATTGGTTTAACAGGATTAAATTCATTTTCTTTACTCATAAGTAGACCTTTGTATGTCTATTCAGTTATTTTTTTTAGAACACATGTCTATTCAGTTATAATTTACATATGTGTTTACAATGTAAGCATTATGTTG]
[+] EMBL AK107922 [TCTCCCCTCTCCTCACGCCGCCGCCGGCCGTGTCGCCGGAGTCCCAACGATCCAGGGGCTTCTCCGATCGGCAGCGAGACGCGCCCTCACCCTCGTCCTCGCCGCCGCCGCCGCCCCATGAGACGACGTCCGCTGTTTACCTCTAAAACACAATGATGTCAAGGTCTGCACTGCTTATTTTTCTGCTTTTTGTACTTATAGTCACATCCCAGCTTGAATGGAAGCAACAACTTGTTAATGAGTTGGAATCTACGTCTCACAAGCAGAAACATATTTCAAGTAGAGGAGAACTTGTCAAGGAAAAGATAATCTTATCTCAAGAAAAGATGATTCGGCTATTGAATGAGCACATCCAGAATCTTCAGCAACAATTGCTGCAATGCCGTGTCAATAATAGGACGGCCAATTCTTCTGGATCTTCTTTGACATCATATATTGGTGAGATCCAAAGGCAGCAGATGATGGATGATTGATAAGGCGAGAAGCCGACGAACCATGTATAACAATCCAGTGGGATGTGCGATTCCAGATCGTACCGGTAGTCATTTCTCCTAGAAATGATGTAGTGTTAGTCTGTATAGAATAGTGATATAGTCAAAGCAAAGGACAAGGCTTTGTCGATTAAAAGAACATTGGTTTAACAGGATTAAATTCATTTTCTTTACTCATAAGTAGACCTTTGTATGTCTATTCAGTTATTTTTTTTAGAACACATGTCTATTCAGTTATAATTTACATATGTGTTTACAATGTAAGCATTATGTTG]
[+] EMBL CA765980 [ GGTCTGCACTGCTTATTTTTCTGCTTTTTGTACTTATAGTCACATCCCAGCTTGAATGGAAGCAACAACTTGTTAATGAGTTGGAATCTACGTCTCACAAGCAGAAACATATTTCAAGTAGAGGAGAACTTGTCAAGGAAAGGATAATCTTATCTCAAGAAAAGATGATTCGGCTATTGAATGAGCACATCCAGAATCTTCAGCAACAATTGCTGCAATGCCGTGTCAATAATAGGACGGCCAATTCTTCTGGATCTTCTTTGACATCATATATTGGTGAGATCCAAAGGCAGCAGATGATGGATGATTGATAAGGCGAGAAGCCGACGAACCATGTATAACAATCCAGTGGGATGTGCGATTCCAGATCGTACCGGTAGTCATTTCTCCTAGAAATGATGTAGTGTTAGTCTGTATAGAATAGTGATATAGTCAAAGCAAAGGACAAGGCTTTGTCGATTAAAAGAACATTGGTTTAACAGGATTAAATTCATTTTCTTTACTCATAAGTAGACCTTTGTATGTCTATTCAGTTATTTTTTTTAGAACACATGTCTATTCAGTTATAATTTACATATGTGTTTAC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6202#0 ----------------------------CCCCCCGCCGGAGTCCCACCATT--AGGGGCT 30
consensus_6202#2 TCTCCCCTCTCCTCACGCCGCCGCCGGCCGTGTCGCCGGAGTCCCAACGATCCAGGGGCT 60
consensus_6202#1 -----------------------------CCTTTAATAAAACAATAAAAAA--AACATAT 29
* * * *
consensus_6202#0 TCTCCGATCGGCAGCGAGACGCGCCCTCACCCTCGTCCTCGCCGCCGCCGCCGCCCCATG 90
consensus_6202#2 TCTCCGATCGGCAGCGAGACGCGCCCTCACCCTCGTCCTCGCCGCCGCCGCCGCCCCATG 120
consensus_6202#1 TTTATGAACAA-AGCAACATATATGCTTACATT-GTAAACACATATGTAAATTATAACTG 87
* * ** * *** * * ** ** * ** * * * **
consensus_6202#0 AGACGACGCCCGCTGTGAGAGCTCCCCTTCCCTTCCTCT-CTACCCTTCACTCACTCCCG 149
consensus_6202#2 AGACGACGTCCGCTGT-----------------TTACCT-CTAAAACACAATGATGTCA- 161
consensus_6202#1 AATAGACATGTGTTCTAAAAAAAATAACTGAATAGACATACAAAGGTCTACTTATGAGTA 147
* *** * * * * * * * * *
consensus_6202#0 CGGC--------CCCGCACCGTTTGTTCG-TTCCCTTGCTCCGTTGCGCGCCTCGCCTCT 200
consensus_6202#2 -AGG--------TCTGCACTGCTTATTTT-TCTGCTTTTTGTACTTATAGTCACATC-CC 210
consensus_6202#1 AAGAAAATGAATTTAATCCTGATAAACCAATGTTCTTTTAATCGACAAAGCCTTGTCCTT 207
* * * * * *** * * *
consensus_6202#0 GGATCCCACTAGGACAGTGTCCTGATGGAGAGTGGAGACCTA-GAGCTC----AGACATC 255
consensus_6202#2 AGCTTGAATGGAAGCAACAACTTGTTAATGAGTTGGAATCTA-CGTCTC----ACAAGCA 265
consensus_6202#1 TGCTTTGACTATATCACTATTCTA-TACAGACTAACACTACATCATTTCTAGGAGAAATG 266
* * * ** * * ** * * ** * *
consensus_6202#0 GTAGCGTGTTCCTTCTGCTACTTCGCTTTT----------GTGCTCGTTGCTCCCCAAAT 305
consensus_6202#2 GAAACATATTTCAAGTAGAGGAGAACTTGTCAAGGAAAAGATAATCTTATCTCAAGAAAA 325
consensus_6202#1 ACTACCGGTACGATCTGGAATCGCACATCCCACTGGATTGTTATACATGGTTCGTCGGCT 326
* * * * * * * * **
consensus_6202#0 TTTGAGCTCTTCGGCTTAATTTGAGGTTTCCTACTTTCCTCTTTCAGATGT-AGTAGTAA 364
consensus_6202#2 GATGA-TTCGGCTATTGAATGAGCACATCCAGAATCTTCAGCAACAATTGC-TGCAATGC 383
consensus_6202#1 TCTCGCCTTATCAATC--ATCCATCATCTGCTGCCTTTGGATCTCACCAATATATGATGT 384
* * * ** * ** *
consensus_6202#0 C-TATC--TAGCACGATAGCTA-TGCTTTTATTTTGGAAATTACATCTCATGGGGAGTGG 420
consensus_6202#2 CGTGTCAATAATAGGACGGCCAATTCTTCTGGATCTTCTTTGACATCATATATTGGTGAG 443
consensus_6202#1 CAAAGAAGATCCACAAGAATTGGCCGTCCTATTATTGACACGGCATTGCAT--CAATTGT 442
* * * * * *** **
consensus_6202#0 TTAAGCAGGCCGAAATTCCTGGATTTTGTAAACTGTATTAATTTGAGTGCTTGGGCCTGA 480
consensus_6202#2 ATCCAAAGGCAGCAGATGATGGATGATTGATAAGGCGAGAAGCCGACGAACCATGTATAA 503
consensus_6202#1 TGCTGAAGATTCTGGATGT--GCTCATTCAATAGCCGAATCATCTTTTCTTGAGATAAGA 500
** * * * * * *
consensus_6202#0 AATGCCTGCCGTGACTATCGTCGGCATGATCGCACTCATCTGGGTTGCTGTCATCAGAAT 540
consensus_6202#2 CAATCCAGTGGGATGTGCGATT--CCAGATCGTACCGGT---AGTCATTTCTCCTAGAA- 557
consensus_6202#1 TTATCTTTTCCTTGACAAGATCTCCTCTACTTGAAATAT----GTTTCTGCTTGTGAGAC 556
* * * * * * ** * *
consensus_6202#0 ATAGGCTAGTAATTTGTTTGAATTGCAAATTTGCAATGATTCACTGCTAGACCCAAGACC 600
consensus_6202#2 ATGATGTAGTG-TTAGTCTGTATAGAATAGTGATA--TAGTCAAAGCAAAGGACAAGGCT 614
consensus_6202#1 GTAAATTCCAACTCATTAACAAGTTGTTGCTTCCATTCAAGCTGGGATGTGACTATAAGT 616
* * * * * * * * * * *
consensus_6202#0 CAACAGTTCTTGCAAATGACTATTGTGCTGACTCTGATTTATGCTAGTACATTTCTTTTC 660
consensus_6202#2 TTGTCGATTAAAAGAACATTGGTTTAACAGGATTAAATTCATTTTCTTTACTCATAAGTA 674
consensus_6202#1 ACGAAAAGCAAAAAAATAA--GCAGTGCACACCTTGA--CATCATTGTGTTTTAGAGGTA 672
** * * ** * * * *
consensus_6202#0 AAGCTGTTCGTGTT-CATGGATATACCCATGGTGTAAGAGGGAAGTATTATTTTTCCTCA 719
consensus_6202#2 GACCTTTGTATGTC-TATTCAGTTATTTTT--TTTAGAACACATGTCTATTCAGTTATAA 731
consensus_6202#1 AACCTATAAAAATAATCATCAAGTATTTCC--CATCAGACATCACCATTGGCAAACTATA 730
* ** * * * ** * * * *
consensus_6202#0 TTCATCTTGATTCTTCAAATAACTGAAAGGCATTAATAACCCGTGACGGATCAATGCACT 779
consensus_6202#2 TTTACATATGTGTTTACAATGTAAGCATTATGTTG------------------------- 766
consensus_6202#1 AAACTAGTTTCAGTTGAATTTACTTAAAAATAGTAAT----------------------- 767
** * * * *
consensus_6202#0 ACTGGAGTAGCTAGGGACTTACCTTTCTAATTAGTATATCCATGAAATAAGTTTATCGTT 839
consensus_6202#2 ------------------------------------------------------------
consensus_6202#1 ------------------------------------------------------------
consensus_6202#0 GATTTTGTTAT 850
consensus_6202#2 -----------
consensus_6202#1 -----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||