These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6206#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1488 fasta sequence [GTGGACTACTGGAGGGAGAGAGAGGGTGAGCGAGGGGATCTTCACTCCTCCAGTTCCTCCCCATTTCTTGCATCCCTTCCGGATCTATCAGCCCCGTCACCAACCTTCTTCCATCCACGCTTCCATCTAAAGATCGGAGCAGGATGATGGGCGATTTCCTCTCCAGGGTCCTACTGTTGGCCTTTGGTTATGCTTATCCTGCTTATGAATGCTATAAAACCGTAGAGCTGAACAAGCCCGAGATTGAGAAGCTTATTTTCTGGTGTCAATATTGGATATTAGTCGCGCTGCTGACGGTTTTGGAACGATTTGGTGATTTTGCAATATCATGGCTACCACTGTACTCAGAAGCAAAGCTGATGTTCTTTATATACTTATGGTGCCCAAGGACAAAGGGAACCTCCTATGTCTATGAGACTTTCTTTAGGCCATACATTTCACAATATGAGAATGATATCGACTGCAGTATTCTTGATTTGAGAGTAAGAGCTGGGGACATGCTTGTGGTTTACTGGCAGAAGGTTGCAATTATTGGCCAGACTACATTCTTTAACATTTTGAAGTATGCTTCTGCACAGTCACCAGCTCATTCATCAAGGTCGCGCTCAGCACAGCAGCAATCGTATCCACAAAAACAGCAGCAAGCACAACCCCAACAACCGAAGCAATCACTGCCCCAACAGCAACAGAAGCAATCACTGCCCCAACAGCAACAGCAGCAGATGCCCCATGAAAAACCAACAACGCTTCGCAGAGCAGCATCTGCTGCCGCTCGAACAGCTGGAATTATGCAGCAGTCGGAGGACACGAAGATTGCTTACTCTAACCCCAAGACCAGGCGTCTACTACCCACAAAGTCTGCTCCGACGGCTTCCACAAGGTCCACGGTTGCAGCAACGAAACCGGTCGAGGATCTTAAGAGCAGTGGAATGAAGCTTGCAACTGAGGAAGCACCATCTCCATCCAGTAATGCTGCCATGCCAGGCTCTGAGCCTAGTGCGCCGCCACTCCCGAAATCTGCAGAAGATGACATGTCTATCGATGAGGTTGACATTCCTATAGAGGACATGGATGAGCCTGTTGCCACTCCAGAGGAGACACCAATGGAGGAGGCGATTCGAGTGACCCGTGGGAGGCTAAGGAAACGTATTGCCGCAGTTTCCACTGCTGATGGCGGTGCAGCAAATTAACTGCATGCCATTTGTCATCTATTTCCACAAAATATGTGCTTCAGAGCTTTAGGGCGATCACCTGTTTGGTTGCAGCAGATATCTCTGTTTCCACATTATGTTCTTCGAGCTTTAGGGTGATCTGCTGTTTGGTTGCAGGCAGCAGATGTCTTGGTTGGTTTAATTTATTGCTTTGAACCTGCTTCCTTAAGTAGTGTTTCTTCCACCTGTTTTGCTAATTTGCTAATATTCCTAGACCTAGAAGATGTAAATATTGCAGGGCATCTGTATATATGTTGGGCAAGCGAATCCTTATTTG] [+] EMBL AK121849 [GTGGACTACTGGAGGGAGAGAGAGGGTGAGCGAGGGGATCTTCACTCCTCCAGTTCCTCCCCATTTCTTGCATCCCTTCCGGATCTATCAGCCCCGTCACCAACCTTCTTCCATCCACGCTTCCATCTAAAGATCGGAGCAGGATGATGGGCGATTTCCTCTCCAGGGTCCTACTGTTGGCCTTTGGTTATGCTTATCCTGCTTATGAATGCTATAAAACCGTAGAGCTGAACAAGCCCGAGATTGAGAAGCTTATTTTCTGGTGTCAATATTGGATATTAGTCGCGCTGCTGACGGTTTTGGAACGATTTGGTGATTTTGCAATATCATGGCTACCACTGTACTCAGAAGCAAAGCTGATGTTCTTTATATACTTATGGTGCCCAAGGACAAAGGGAACCTCCTATGTCTATGAGACTTTCTTTAGGCCATACATTTCACAATATGAGAATGATATCGACTGCAGTATTCTTGATTTGAGAGTAAGAGCTGGGGACATGCTTGTGGTTTACTGGCAGAAGGTTGCAATTATTGGCCAGACTACATTCTTTAACATTTTGAAGTATGCTTCTGCACAGTCACCAGCTCATTCATCAAGGTCGCGCTCAGCACAGCAGCAATCGTATCCACAAAAACAGCAGCAAGCACAACCCCAACAACCGAAGCAATCACTGCCCCAACAGCAACAGAAGCAATCACTGCCCCAACAGCAACAGCAGCAGATGCCCCATGAAAAACCAACAACGCTTCGCAGAGCAGCATCTGCTGCCGCTCGAACAGCTGGAATTATGCAGCAGTCGGAGGACACGAAGATTGCTTACTCTAACCCCAAGACCAGGCGTCTACTACCCACAAAGTCTGCTCCGACGGCTTCCACAAGGTCCACGGTTGCAGCAACGAAACCGGTCGAGGATCTTAAGAGCAGTGGAATGAAGCTTGCAACTGAGGAAGCACCATCTCCATCCAGTAATGCTGCCATGCCAGGCTCTGAGCCTAGTGCGCCGCCACTCCCGAAATCTGCAGAAGATGACATGTCTATCGATGAGGTTGACATTCCTATAGAGGACATGGATGAGCCTGTTGCCACTCCAGAGGAGACACCAATGGAGGAGGCGATTCGAGTGACCCGTGGGAGGCTAAGGAAACGTATTGCCGCAGTTTCCACTGCTGATGGCGGTGCAGCAAATTAACTGCATGCCATTTGTCATCTATTTCCACAAAATATGTGCTTCAGAGCTTTAGGGCGATCACCTGTTTGGTTGCAGCAGATATCTCTGTTTCCACATTATGTTCTTCGAGCTTTAGGGTGATCTGCTGTTTGGTTGCAGGCAGCAGATGTCTTGGTTGGTTTAATTTATTGCTTTGAACCTGCTTCCTTAAGTAGTGTTTCTTCCACCTGTTTTGCTAATTTGCTAATATTCCTAGACCTAGAAGATGTAAATATTGCAGGGCATCTGTATATATGTTGGGCAAGCGAATCCTTATTTG] [+] EMBL AA749718 [ gtCTGCAGTATTCTTGATTTGAGAGTAAGAGCTGGGGACATGCTTGTGGTTTACTGGCAGAAGGTTGCAATTATTGGCCAGACTACATTCTTTAACATTTTGAAGTATGCTTCTGCACAGTCACCAGCTCATTCATCAAGGTCGCGCTCAACACAGCAGCAATCGTATCCACAAAAACAGCAGCAAGCACAACCCCAACAACCGAAGCAATCACTGCCCCAACA ] [-] EMBL AU197192 [ CCCGAAATCTGCAGAAGATGACATGTCTANCGATGAGGTTGACATTCCTATAGAGGACATGGATGAGCCTGTTGCCACTCCAGAGGAGACACCAATGGANNAGGCGATTCGAGTGACCCGTGGGAGGCTAANGAAACGTATTGCCGCAGTTTCCACTGCTGATGGCGGTGCAGCAAATTAACTGCATGCCATTTGTCATCTATTTCCACAAAATATGTGCTTCAGAGCTTTAGGGCGATCACCTGTTTGGTTGCAGCAGATATCTCTGTTTCCACATTATGTTCTTCGAGCTTTANGGTGATCTGCTGTTTGGTTGCAGGCAGCAGATGTCTTGGTTGGTTTAATTTATTGCTTTGAACCTGCTTCCTTAAaaaaaaa ] consensusID : consensus_6206#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1474 fasta sequence [GTGTTGCCCGTTGGGTTTGGTGGAGTTTGAAGAGCTCTGTCGCCGTCTTCACTCCTCGCAGTCAGACGGGAGTGGACTACTGGAGGGAGAGAGAGGGTGAGCGAGGGGATCTTCACTCCTCCAGTTCCTCCCCATTTCTTGCATCCCTTCCGGATCTATCAGCCCCGTCACCAACCTTCTTCCATCCACGCTTCCATCTATCGGAGCAGGATGATGGGCGATTTCCTCTCCAGGGTCCTACTGTTGGCCTTTGGTTATGCTTATCCTGCTTATGAATGCTATAAAACCGTAGAGCTGAACAAGCCCGAGATTGAGAAGCTTATTTTCTGGTGTCAATATTGGATATTAGTCGCGCTACTGACGGTTTTGGAACGATTTGGTGATCTTGCAATATCATGGCTACCACTGTACTCAGAAGCAAAGCTGATGTTCTTTATATACTTATGGTGCCCAAGGACAAAGGGAACCTCCTATGTCTATGAGACTTTCTTTAGGCCATACATTTCACAGTATGAGAATGATATCGACTGCAGTATTCTTGATTTGAGAGTAAGAGCTGGGGACATGCTTGTGGTTTACTGGCAGAAGGTTGCAATTATTGGCCAGACTACATTCTTTAACATTTTGAAGTATGCTTCTGCACAGTCACCAGCTCATTCATCAAGGTCGCGCTCAACACAGGTTTGCAAGCAGAATGTTTTATCTTCTAGTTTGTTGAATGATAATGGAACAGCATTCATCAATCAATGCCTTTTGAACACTCCTACGTTTGGTTCACAATTCATATTTATGCACAATCTCTTTTGCCTGCTAATACCTGAGTTGCAGGTGTCCTGCTATCATAGTTTCGTAGATAAGTGTCATGCCGTAGTACTCCAAACTTTCTGTGCAACTACTCCAACTTTGTGTTAAGTTCCATGAGAAATAGAAGTTTACATTGTTATTGTGGTTGTTTGTTTGAGATGATTGTAATACTCGAAAATAGAATGAACCAAAGATGTTCCATAATAACTTGCTTCAATCCTAAACTCTTAGCAAGATAATGTCACGAAAGACGATATTTAACAGCACCTTCAACTATGTTTGCGATAAAGGCATTAAATTAACAAAAGTCAAAACTAATCAAATTAAAGCAAGATAATGTCACGAAAGACAATATTTAGCAGTTCCTTCAACTATGTTTGGGATAAAGGCATTGAATTAACAAAAGTCAAAACTAATCAAATTAAAGCGAGACAATATTTAAATTGCTCTGTATATTTGTACAAACATTATGTAATAGAAAAAAACATCCACGTGTGGTATCTAATAGCAAGACGTTTAAGGTGCCGTATGAGGTTATAGTGACCCGTTACAAGGTGCATAGGGTTGTAGAAAGAATGACCAGCCTTCAGTTCCACAAGGTTGGCAGCCATCCATTGCATCACTAAAAGAACATAGTGGGGGTCACAACAGCCACCAAGACAAAGCAGCA] [+] EMBL AK064459 [GTGTTGCCCGTTGGGTTTGGTGGAGTTTGAAGAGCTCTGTCGCCGTCTTCACTCCTCGCAGTCAGACGGGAGTGGACTACTGGAGGGAGAGAGAGGGTGAGCGAGGGGATCTTCACTCCTCCAGTTCCTCCCCATTTCTTGCATCCCTTCCGGATCTATCAGCCCCGTCACCAACCTTCTTCCATCCACGCTTCCATCTATCGGAGCAGGATGATGGGCGATTTCCTCTCCAGGGTCCTACTGTTGGCCTTTGGTTATGCTTATCCTGCTTATGAATGCTATAAAACCGTAGAGCTGAACAAGCCCGAGATTGAGAAGCTTATTTTCTGGTGTCAATATTGGATATTAGTCGCGCTACTGACGGTTTTGGAACGATTTGGTGATCTTGCAATATCATGGCTACCACTGTACTCAGAAGCAAAGCTGATGTTCTTTATATACTTATGGTGCCCAAGGACAAAGGGAACCTCCTATGTCTATGAGACTTTCTTTAGGCCATACATTTCACAGTATGAGAATGATATCGACTGCAGTATTCTTGATTTGAGAGTAAGAGCTGGGGACATGCTTGTGGTTTACTGGCAGAAGGTTGCAATTATTGGCCAGACTACATTCTTTAACATTTTGAAGTATGCTTCTGCACAGTCACCAGCTCATTCATCAAGGTCGCGCTCAACACAGGTTTGCAAGCAGAATGTTTTATCTTCTAGTTTGTTGAATGATAATGGAACAGCATTCATCAATCAATGCCTTTTGAACACTCCTACGTTTGGTTCACAATTCATATTTATGCACAATCTCTTTTGCCTGCTAATACCTGAGTTGCAGGTGTCCTGCTATCATAGTTTCGTAGATAAGTGTCATGCCGTAGTACTCCAAACTTTCTGTGCAACTACTCCAACTTTGTGTTAAGTTCCATGAGAAATAGAAGTTTACATTGTTATTGTGGTTGTTTGTTTGAGATGATTGTAATACTCGAAAATAGAATGAACCAAAGATGTTCCATAATAACTTGCTTCAATCCTAAACTCTTAGCAAGATAATGTCACGAAAGACGATATTTAACAGCACCTTCAACTATGTTTGCGATAAAGGCATTAAATTAACAAAAGTCAAAACTAATCAAATTAAAGCAAGATAATGTCACGAAAGACAATATTTAGCAGTTCCTTCAACTATGTTTGGGATAAAGGCATTGAATTAACAAAAGTCAAAACTAATCAAATTAAAGCGAGACAATATTTAAATTGCTCTGTATATTTGTACAAACATTATGTAATAGAAAAAAACATCCACGTGTGGTATCTAATAGCAAGACGTTTAAGGTGCCGTATGAGGTTATAGTGACCCGTTACAAGGTGCATAGGGTTGTAGAAAGAATGACCAGCCTTCAGTTCCACAAGGTTGGCAGCCATCCATTGCATCACTAAAAGAACATAGTGGGGGTCACAACAGCCACCAAGACAAAGCAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6206#0 ------------------------------------------------------------ consensus_6206#1 GTGTTGCCCGTTGGGTTTGGTGGAGTTTGAAGAGCTCTGTCGCCGTCTTCACTCCTCGCA 60 consensus_6206#0 -----------GTGGACTACTGGAGGGAGAGAGAGGGTGAGCGAGGGGATCTTCACTCCT 49 consensus_6206#1 GTCAGACGGGAGTGGACTACTGGAGGGAGAGAGAGGGTGAGCGAGGGGATCTTCACTCCT 120 ************************************************* consensus_6206#0 CCAGTTCCTCCCCATTTCTTGCATCCCTTCCGGATCTATCAGCCCCGTCACCAACCTTCT 109 consensus_6206#1 CCAGTTCCTCCCCATTTCTTGCATCCCTTCCGGATCTATCAGCCCCGTCACCAACCTTCT 180 ************************************************************ consensus_6206#0 TCCATCCACGCTTCCATCTAAAGATCGGAGCAGGATGATGGGCGATTTCCTCTCCAGGGT 169 consensus_6206#1 TCCATCCACGCTTCCATCTA----TCGGAGCAGGATGATGGGCGATTTCCTCTCCAGGGT 236 ******************** ************************************ consensus_6206#0 CCTACTGTTGGCCTTTGGTTATGCTTATCCTGCTTATGAATGCTATAAAACCGTAGAGCT 229 consensus_6206#1 CCTACTGTTGGCCTTTGGTTATGCTTATCCTGCTTATGAATGCTATAAAACCGTAGAGCT 296 ************************************************************ consensus_6206#0 GAACAAGCCCGAGATTGAGAAGCTTATTTTCTGGTGTCAATATTGGATATTAGTCGCGCT 289 consensus_6206#1 GAACAAGCCCGAGATTGAGAAGCTTATTTTCTGGTGTCAATATTGGATATTAGTCGCGCT 356 ************************************************************ consensus_6206#0 GCTGACGGTTTTGGAACGATTTGGTGATTTTGCAATATCATGGCTACCACTGTACTCAGA 349 consensus_6206#1 ACTGACGGTTTTGGAACGATTTGGTGATCTTGCAATATCATGGCTACCACTGTACTCAGA 416 *************************** ******************************* consensus_6206#0 AGCAAAGCTGATGTTCTTTATATACTTATGGTGCCCAAGGACAAAGGGAACCTCCTATGT 409 consensus_6206#1 AGCAAAGCTGATGTTCTTTATATACTTATGGTGCCCAAGGACAAAGGGAACCTCCTATGT 476 ************************************************************ consensus_6206#0 CTATGAGACTTTCTTTAGGCCATACATTTCACAATATGAGAATGATATCGACTGCAGTAT 469 consensus_6206#1 CTATGAGACTTTCTTTAGGCCATACATTTCACAGTATGAGAATGATATCGACTGCAGTAT 536 ********************************* ************************** consensus_6206#0 TCTTGATTTGAGAGTAAGAGCTGGGGACATGCTTGTGGTTTACTGGCAGAAGGTTGCAAT 529 consensus_6206#1 TCTTGATTTGAGAGTAAGAGCTGGGGACATGCTTGTGGTTTACTGGCAGAAGGTTGCAAT 596 ************************************************************ consensus_6206#0 TATTGGCCAGACTACATTCTTTAACATTTTGAAGTATGCTTCTGCACAGTCACCAGCTCA 589 consensus_6206#1 TATTGGCCAGACTACATTCTTTAACATTTTGAAGTATGCTTCTGCACAGTCACCAGCTCA 656 ************************************************************ consensus_6206#0 TTCATCAAGGTCGCGCTCAGCACAGCAGCAATCGTATCCACAAAAACAGCAGCAAGCACA 649 consensus_6206#1 TTCATCAAGGTCGCGCTCAACACAG----------GTTTGCAA-----GCAGAATGTTTT 701 ******************* ***** * *** **** * * consensus_6206#0 ACCCCAACAACCGAAGCAATCACTGCCCCAACAGCAACAGAAGCAATCACTGCCCCAACA 709 consensus_6206#1 ATCTT--CTAGTTTGTTGAATGATAATGGAACAGCATTC--ATCAATCAATGCCTTTTGA 757 * * * * * * ******* * ****** **** * consensus_6206#0 GCAACAGCAGCAGATGCCCCATGAAAAACCAACAACGCTTCGCAGAGCAGCAT--CTGCT 767 consensus_6206#1 ACACT-----CCTACGTTTGGTTCACAATTCATATTTATGCACAATCTCTTTTGCCTGCT 812 ** * * * * * ** * * * * ** * ***** consensus_6206#0 GCCGCTCGAACAGCTGGAATTATGCAGCAGTCGGAGGACACGAAGATTGCTTACTCTA-- 825 consensus_6206#1 AATACCTGAGTTGCAGGTGTCCTGCTATCATAGTTTCGTAGATAAGTGTCATGCCGTAGT 872 * ** ** ** * *** * * * * * * * * ** consensus_6206#0 ACCCCAAGA---CCAGGCGTCTACTACC-CACAAAGTCTGCTCCGACGGCTTCCACAAGG 881 consensus_6206#1 ACTCCAAACTTTCTGTGCAACTACTCCAACTTTGTGTTAAGTTCCATGAGAAATA-GAAG 931 ** **** * ** ***** * * ** * * * * * * * consensus_6206#0 TCCACGGTTGCAGCAACGAAACCGGTCGAGGATCTTAAGAGCAGTGGAATGAAGCTTGCA 941 consensus_6206#1 TTTACATTGTTATTGTGGTTGTTTGTTTGAGATGATTGTAATACTCGAAAATAGAATG-A 990 * ** * * * ** *** * * * * *** ** ** * consensus_6206#0 ACTGAGGAAGCACCATCTCCATCCAGTAATGCTGCCATGCCAGGCTCTGAGCCTAGTG-C 1000 consensus_6206#1 ACCAAAGATGTTCCATAATAACT------TGCTTCAATCCTAAACTCTTAGCAAGATAAT 1044 ** * ** * **** * **** * ** * * **** *** * consensus_6206#0 GCCGCCACTCCCGAAATCTG-CAGAAGAT---GACATGTCTATCGATGAGGTTGACATTC 1056 consensus_6206#1 GTCACGAAAGACGATATTTAACAGCACCTTCAACTATGTTTG-CGATAAAGGCATTAAAT 1103 * * * * *** ** * *** * * **** * **** * * * consensus_6206#0 CTATAGAGGACATGGATGAGCCTGTTGCCACTCCAGAGGAGACACCAATGGAGGA----- 1111 consensus_6206#1 TAACAAAAGTCAAAACTAATCAAATTA--AAGCAAGATAATGTCACGAAAGACAATATTT 1161 * * * * ** * * * ** * * *** * * * ** * consensus_6206#0 GGCGATTCGAGTGACC-CGTGGGAGGCTAAGGAAACGTATTGCCGCAGTTTCCACTGCTG 1170 consensus_6206#1 AGCAGTTCCTTCAACTATGTTTGGGATAAAGGCATTGAATTAACAAAAGT--CAAAACTA 1219 ** *** ** ** * * **** * * *** * * * ** ** consensus_6206#0 ATGGCGGTGCAGCAAATTAACTGCATGCCATTTGTCATCTATTTCCACAAAATATGTGCT 1230 consensus_6206#1 ATCAAATTAAAGCGAGACAA-TATTTAAATTGCTCTGTATATTTGTACAAACATTATGTA 1278 ** * *** * ** * * * * ***** ***** * ** consensus_6206#0 TCAGAGCTTTAGGGCGATCACCTGTTTGGTTGCAGCAGATATCTCTGTTTCCACATTATG 1290 consensus_6206#1 ATAGAAA---AAAACATCCACGTGT------------GGTATCT----AATAGCAAGACG 1319 *** * * *** *** * ***** ** * * consensus_6206#0 TTCTTCGAGCTTTAGGGTGATCTGCTGTTTGGTTGCAGGCAGCAGATGTCTTGGTTGGTT 1350 consensus_6206#1 TTTAAGGTGCCGTATGAGGTTATAGTGACCCGTTACAAGGTGCATAGGGTT--GTAGAAA 1377 ** * ** ** * * * * ** *** ** * *** * * * ** * consensus_6206#0 TAATTTATTGCTTTGAACCTGCTTCCTTAAGTAGTGTTTCTTCCACCTGTTTTGCTAATT 1410 consensus_6206#1 GAATGACCAGCCTTCA----GTTCCACAAGGTTGGCAGCCATCCAT-TGCATCACTAA-- 1430 *** ** ** * * * * * ** * * **** ** * **** consensus_6206#0 TGCTAATATTCCTAGACCTAGAAGATGTAAATATTGCAGGGCATCTGTATATATGTTGGG 1470 consensus_6206#1 -AAGAACATAGTGGGGGTCACAACA-GCCACCAAGACAAAGCAGCA-------------- 1474 ** ** * * ** * * * * ** *** * consensus_6206#0 CAAGCGAATCCTTATTTG 1488 consensus_6206#1 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||