cluster # 6207

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Oryza sativa
cluster # 6207 cluster # 6207 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6207#0 length = 961 sequences # 3

consensus_6207#1 length = 572 sequences # 1

consensusID : consensus_6207#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 961
fasta sequence

                              [GTGTCCCAATATATCTCCTGAAAGGCAGTGTTTCTCTGTCTCTCTCTATGTCCTCTAGCTAGATAGATAGCACAGAGGAGAGAGCTCTAGCTTAGCTGCTGCTGCCCCGGCAGCTAGCTACAAATTAAGAAAAGGATTAGGAGCAGTGGGATTTGGTAGTTTGGTGCGTGTGTCTTGTTGCCTTTAGCAGCTTGGAGTTGAGGCAAAAATCCAATTCTGCTCAATTGGACTCATGGGGAGGGCTCCATGCTGTGACAAGAACAACGTCAAGAAGGGACCTTGGTCGCCTGAGGAGGATGCCAAGCTCAAGGAGTTCATAGAGAAGCATGGCACCGGCGGCAATTGGATTGCTCTCCCTCAGAAAGCAGGATTGAGGAGATGTGGCAAAAGTTGTAGGCTTAGATGGCTAAATTACCTGAGGCCCAATATTAAGCATGGAGAGTTCACAGAGCATGAAGACAGGATCATCTGCAGCATGTTTGCCAGTATTGGGAGCAGGTGGTCTATAATCGCGTCGCAGCTCCCCGGCAGAACGGACAACGACATCAAGAACTACTGGAACACCAAGCTCAAGAAGAAGCTCCTCGGNTNGAGCGCCGNCGNCGNCGNCGNGCCGNCACGGATGCAGCGTCATCAGCAGAGCCACCACCGGTCGTNTCTTCTNCTGCCGAACTCGCCGTCGCTCAATCCCGGCGGCGGCTACCCAGGCTTCTTCTTNCGGCGCCGGCGGNTTCCATTCTCAGGAACCAGCTATGCCGGTTACCCTACCAACCACCACCCAGGAATTCATGCTTGGCACTCACTCTTGGCATCCAATGGTGGAGCGCCTTGCGCTGTTAACCATCTGGACCGGGCATNACATATATATTAAGTTGTTTGGGAAGGAGGAATCCCCACCAACCTGAACGGGTTTGGTTCGAACAAAAAACCTCCAACTTGTAAATAGGCTGTGCGGGGCCAC]

[+] EMBL BE040062             [GTGTCCCAATATATCTCCTGAAAGGCAGTGTTTCTCTGTCTCTCTCTATGTCCTCTAGCTAGATAGATAGCACAGAGGAGAGAGCTCTAGCTTAGCTGCTGCTGCCCCGGCAGCTAGCTACAAATTAAGAAAAGGATTAGGAGCAGTGGGATTTGGTAGTTTGGTGCGTGTGTCTTGTTGCCTTTAGCAGCTTGGAGTTGAGGCAAAAATCCAATTCTGCTCAATTGGACTCATGGGGAGGGCTCCATGCTGTGACAAGAACAACGTCAAGAAGGGACCTTGGTCGCCTGAGGAGGATGCCAAGCTCAAGGAGTTCATAGAGAAGCATGGCACCGGCGGCAATTGGATTGCTCTCCCTCAGAAAGCAGGATTGAGGAGATGTGGCAAAAGTTGTAGGCTTAGATGGCTAAATTACCTGAGGCCCAATATTAAGCATGGAGAGTTCACAGAGCATGAAGACAGGATCATCTGCAGCATGTTTGCCAGTATTGGGAGCAGGTGGTCTATAATCGCGTCGCAGCTCCCCGGCAGAACGGACAACGACATCAAGAACTACTGGAACACCAAGCTCAAGAAGAAGCTCCTCGGNTNGAGCGCCGNCGNCGNCGNCGNGCCGNCACGGATGCAGCGTCATCAGCAGAGCCACCACCGGTCGTNTCTTCTNCTGCCGAACTCGCCGTCGCTCAATCCCGGCGGCGGCTACCCAGGCTTCTTCTTNCGGCGCCGGCGGNTTCCATTCTCAGGAACCAGCTATGCCGGTTACCCTACCAACCACCACCCAGGAATTCATGCTTGGCACTCACTCTTGGCATCCAATGGTGGAGCGCCTTGCGCTGTTAACCATCTGGACCGGGCATNACATATATATTAAGTTGTTTGGGAAGGAGGAATCCCCACCAACCTGAACGGGTTTGGTTCGAACAAAAAACCTCCAACTTGTAAATAGGCTGTGCGGGGCCAC]
[+] EMBL CA755124             [GTGTCCCAATATATCTCCTGAAAGGCAGTGTTTCTCTGTCTCTCTCTATGTCCTCTAGCTAGATAGATAGCACAGAGGAGAGAGCTCTAGCTTAGCTGCTGCTGCCCCGGCAGCTAGCTACAAATTAAGAAAAGGATTAGGAGCAGTGGGATTTGGTAGTTTGGTGCGTGTGTCTTGTTGCCTTTAGCAGCTTGGAGTTGAGGCAAAAATCCAATTCTGCTCAATTGGACTCATGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL OSR22211A            [                                                                                                                                                                                         AGCAGCTTGGAGTTGAGGCAAAAATCCAATTCTGCTCAATTGGACTCATGGGGAGGGCTCCATGCTGTGACAAGAACAACGTCAAGAAGGGACCTTGGTCGCCTGAGGAGGATGCCAAGCTCAAGGAGTTCATAGAGAAGCATGGCACCGGCGGCAATTGGATTGCTCTCCCTCAGAAAGCAGGATTGAGGAGATGTGGCAAAAGTTGTAGGCTTAGATGGCTAAATTACCTGAGGCCCAATATTAAGCATGGAGAGTTCACAGAGCATGAAGACAGGATCATCTGCAACATGTTTGCCAGTATTGGGAGCAGGTGGTCTATAATCGCGTCGCAGCTCCCCGGCAGAACGGACAAC                                                                                                                                                                                                                                                                                                                                                                                                                                    ]




>consensus_6207#0
GTGTCCCAATATATCTCCTGAAAGGCAGTGTTTCTCTGTCTCTCTCTATGTCCTCTAGCT
AGATAGATAGCACAGAGGAGAGAGCTCTAGCTTAGCTGCTGCTGCCCCGGCAGCTAGCTA
CAAATTAAGAAAAGGATTAGGAGCAGTGGGATTTGGTAGTTTGGTGCGTGTGTCTTGTTG
CCTTTAGCAGCTTGGAGTTGAGGCAAAAATCCAATTCTGCTCAATTGGACTCATGGGGAG
GGCTCCATGCTGTGACAAGAACAACGTCAAGAAGGGACCTTGGTCGCCTGAGGAGGATGC
CAAGCTCAAGGAGTTCATAGAGAAGCATGGCACCGGCGGCAATTGGATTGCTCTCCCTCA
GAAAGCAGGATTGAGGAGATGTGGCAAAAGTTGTAGGCTTAGATGGCTAAATTACCTGAG
GCCCAATATTAAGCATGGAGAGTTCACAGAGCATGAAGACAGGATCATCTGCAGCATGTT
TGCCAGTATTGGGAGCAGGTGGTCTATAATCGCGTCGCAGCTCCCCGGCAGAACGGACAA
CGACATCAAGAACTACTGGAACACCAAGCTCAAGAAGAAGCTCCTCGGNTNGAGCGCCGN
CGNCGNCGNCGNGCCGNCACGGATGCAGCGTCATCAGCAGAGCCACCACCGGTCGTNTCT
TCTNCTGCCGAACTCGCCGTCGCTCAATCCCGGCGGCGGCTACCCAGGCTTCTTCTTNCG
GCGCCGGCGGNTTCCATTCTCAGGAACCAGCTATGCCGGTTACCCTACCAACCACCACCC
AGGAATTCATGCTTGGCACTCACTCTTGGCATCCAATGGTGGAGCGCCTTGCGCTGTTAA
CCATCTGGACCGGGCATNACATATATATTAAGTTGTTTGGGAAGGAGGAATCCCCACCAA
CCTGAACGGGTTTGGTTCGAACAAAAAACCTCCAACTTGTAAATAGGCTGTGCGGGGCCA
C

consensusID : consensus_6207#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 572
fasta sequence

                              [AGTAGTCTGTTAATGTCTAGCACACTGGAAGATATGCCAAGTAGTTTGATCTTAGTTATTAGTTAAATTCTAGCTAGCTTGTATTTGTTGATCTTCAGTAGTATGCATGCATAGCCCTTCAATTCTCCTCTTATTTTTGTCTCTGAATACTGGAGCGCAGTACTAGCTAATGGTTGTCTATCCTAGACCATTTCATTTCTGTCTCCTGATCTGATGCAATTGGGTGCTGTATAATTCAAATGAATTTAAAGTATATTAATTGCATATGATTATTGTAGGGCTGAAGAGATGTGGCAAGAGTTGCAGGCTCAGATGGCTCAACTACCTGCGGCCAAACATTAAGCATGGTGATTTCACAGAAGAAGAGGAGCACATCATTTGTAGCCTCTACATTAGCATCGGTAGCAGGTGGTCGATCATCGCGGCGCAGCTGCCGGGGAGAACGGACAACGACATCAAGAACTACTGGAACACCAAGCTGAAGAAGAAGCTCCTCGGCAAGCGCGCGCCGTCGCGCCGCGCCCGCGCAACCAAGACCCTGCGGTCTAGAAGGCAGCGCCGCCGCGCCATGG]

[+] EMBL CA756492             [AGTAGTCTGTTAATGTCTAGCACACTGGAAGATATGCCAAGTAGTTTGATCTTAGTTATTAGTTAAATTCTAGCTAGCTTGTATTTGTTGATCTTCAGTAGTATGCATGCATAGCCCTTCAATTCTCCTCTTATTTTTGTCTCTGAATACTGGAGCGCAGTACTAGCTAATGGTTGTCTATCCTAGACCATTTCATTTCTGTCTCCTGATCTGATGCAATTGGGTGCTGTATAATTCAAATGAATTTAAAGTATATTAATTGCATATGATTATTGTAGGGCTGAAGAGATGTGGCAAGAGTTGCAGGCTCAGATGGCTCAACTACCTGCGGCCAAACATTAAGCATGGTGATTTCACAGAAGAAGAGGAGCACATCATTTGTAGCCTCTACATTAGCATCGGTAGCAGGTGGTCGATCATCGCGGCGCAGCTGCCGGGGAGAACGGACAACGACATCAAGAACTACTGGAACACCAAGCTGAAGAAGAAGCTCCTCGGCAAGCGCGCGCCGTCGCGCCGCGCCCGCGCAACCAAGACCCTGCGGTCTAGAAGGCAGCGCCGCCGCGCCATGG]




>consensus_6207#1
AGTAGTCTGTTAATGTCTAGCACACTGGAAGATATGCCAAGTAGTTTGATCTTAGTTATT
AGTTAAATTCTAGCTAGCTTGTATTTGTTGATCTTCAGTAGTATGCATGCATAGCCCTTC
AATTCTCCTCTTATTTTTGTCTCTGAATACTGGAGCGCAGTACTAGCTAATGGTTGTCTA
TCCTAGACCATTTCATTTCTGTCTCCTGATCTGATGCAATTGGGTGCTGTATAATTCAAA
TGAATTTAAAGTATATTAATTGCATATGATTATTGTAGGGCTGAAGAGATGTGGCAAGAG
TTGCAGGCTCAGATGGCTCAACTACCTGCGGCCAAACATTAAGCATGGTGATTTCACAGA
AGAAGAGGAGCACATCATTTGTAGCCTCTACATTAGCATCGGTAGCAGGTGGTCGATCAT
CGCGGCGCAGCTGCCGGGGAGAACGGACAACGACATCAAGAACTACTGGAACACCAAGCT
GAAGAAGAAGCTCCTCGGCAAGCGCGCGCCGTCGCGCCGCGCCCGCGCAACCAAGACCCT
GCGGTCTAGAAGGCAGCGCCGCCGCGCCATGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6207#0      GTGTCCCAATATATCTCCTGAAAGGCAGTGTTTCTCTGTCTCTCTCTATGTCCTCTAGCT 60
consensus_6207#1      ------------------------------------------------------------
                                                                                  

consensus_6207#0      AGATAGATAGCACAGAGGAGAGAGCTCTAGCTTAGCTGCTGCTGCCCCGGCAGCTAGCTA 120
consensus_6207#1      --------------------AGTAGTCTG--TTAATGTCTAGCACACTGGAAGATA--TG 36
                                          **   ***   ***    **    * * ** ** **  * 

consensus_6207#0      CAAATTAAGAAAAGGATTAGGAGCAGTGGGATTTGGTAGTTTGGTGCGTGTGTCTTGTTG 180
consensus_6207#1      CCAAGTAGTTTGATCTTAGTTATTAGTTAAATTC--TAGCTAGCT---TGTATTTGTTGA 91
                      * ** **     *   *    *  ***   ***   *** * * *   *** * *  *  

consensus_6207#0      CCTTTAGCAGCTTGGAGTTGAGGCAAAAATCCAATTCTGCTC--AATTGGACTCATGGGG 238
consensus_6207#1      TCTTCAGTAGTATGCATGCATAGCCC---TTCAATTCTCCTCTTATTTTTGTCTCTGAAT 148
                       *** ** **  ** *      **     * ******* ***  * **       **   

consensus_6207#0      AGGGCTCCATGCTGTGACAAGAACAACGTCAAGAAGGGACC--TTGGTCGCCTGAGGAGG 296
consensus_6207#1      ACTGGAGCGCAGTACTAGCTAATGGTTGTCTATCCTAGACCATTTCATTTCTGTCTCCTG 208
                      *  *   *    *   *    *     *** *     ****  **  *  *        *

consensus_6207#0      ATGCCAAGCTCAAGGAGTTCATAGAGAAGCATGGCACCGGCGGCAATTGGATTGCTCTCC 356
consensus_6207#1      ATCTGATGCAATTGGGTGCTGTATAATTCAAATGAATTTAAAGTATATTAATTGCATATG 268
                      **   * **    **      ** *     *  * *      * *  *  *****     

consensus_6207#0      CTCAGAAAGCAGGATTGAGGAGATGTGGCAAAAGTTGTAGGCTTAGATGGCTAAATTACC 416
consensus_6207#1      ATTAT--TGTAGGGCTGAAGAGATGTGGCAAGAGTTGCAGGCTCAGATGGCTCAACTACC 326
                       * *    * ***  *** ************ ***** ***** ******** ** ****

consensus_6207#0      TGAGGCCCAATATTAAGCATGGAGAGTTCACAGAGCATGAAGACAGGATCATCTGCAGCA 476
consensus_6207#1      TGCGGCCAAACATTAAGCATGGTGATTTCACAGAAGAAGAGGAGCACATCATTTGTAGCC 386
                      ** **** ** *********** ** ********  * ** **    ***** ** *** 

consensus_6207#0      TGTTTGCCAGTATTGGGAGCAGGTGGTCTATAATCGCGTCGCAGCTCCCCGGCAGAACGG 536
consensus_6207#1      TCTACATTAGCATCGGTAGCAGGTGGTCGATCATCGCGGCGCAGCTGCCGGGGAGAACGG 446
                      * *     ** ** ** *********** ** ****** ******* ** ** *******

consensus_6207#0      ACAACGACATCAAGAACTACTGGAACACCAAGCTCAAGAAGAAGCTCCTCGGNTNGAGCG 596
consensus_6207#1      ACAACGACATCAAGAACTACTGGAACACCAAGCTGAAGAAGAAGCTCCTCGGCAAGCGCG 506
                      ********************************** *****************   * ***

consensus_6207#0      CCGNCGNCGNCGNCGNGCCGNCACGGATGCAGCGTCATCAGC--AGAGCCACCACCGGTC 654
consensus_6207#1      C-GCCGTCGC-GCCGCGCCCGCGCAACCAAGACCCTGCGGTCTAGAAGGCAGCGCCG-CC 563
                      * * ** **  * ** ***  * *        *        *    ** ** * ***  *

consensus_6207#0      GTNTCTTCTNCTGCCGAACTCGCCGTCGCTCAATCCCGGCGGCGGCTACCCAGGCTTCTT 714
consensus_6207#1      GCGCCATGG--------------------------------------------------- 572
                      *   * *                                                     

consensus_6207#0      CTTNCGGCGCCGGCGGNTTCCATTCTCAGGAACCAGCTATGCCGGTTACCCTACCAACCA 774
consensus_6207#1      ------------------------------------------------------------
                                                                                  

consensus_6207#0      CCACCCAGGAATTCATGCTTGGCACTCACTCTTGGCATCCAATGGTGGAGCGCCTTGCGC 834
consensus_6207#1      ------------------------------------------------------------
                                                                                  

consensus_6207#0      TGTTAACCATCTGGACCGGGCATNACATATATATTAAGTTGTTTGGGAAGGAGGAATCCC 894
consensus_6207#1      ------------------------------------------------------------
                                                                                  

consensus_6207#0      CACCAACCTGAACGGGTTTGGTTCGAACAAAAAACCTCCAACTTGTAAATAGGCTGTGCG 954
consensus_6207#1      ------------------------------------------------------------
                                                                                  

consensus_6207#0      GGGCCAC 961
consensus_6207#1      -------