|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6208#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1193 fasta sequence
[TCTGTTCTTGCCCTGTGGTTTCTTCTCCGTTTGCAGGCTTTATTGCATTGCAGGAAAAGATGGCGGCTTCTCATGGAAATGCGATCTTTGTTCTGCTGCTGTGCACTCTCTTTCTCCCGTCCCTTGCATGTGACAGCGGTGGCGTGAAGTTTGGGTACACTGGTTCTATCGGCCCTGACTTCTGGGGGAATTTGAGTGCCGACTTCACGCGTTGCTCGAACGGAAAGCAGCAGTCCCCAATTGACATCGACACCAACAACCTGGTTCATGAACTGAATATGGAGCCACTCCATAGAAATTATACCGCTGCAAATGCTACTCTTGTCGACAACATCTTCAACGTCGCGCTGCGGTACGAAGAGGCAGCAGGGGTTCTGAGCATTAACGGGGTGAAGTACACGCTGAAGCAGATGCACTGGCACTCTCCTTCCGAGCACACCATCAACGGCTTCAGGTTCCCACTGGAGCTCCACATGGTTCACACCAACGAAAATGGCAACATCACCGTTCTGGCCTTTCTCTACCGATTTGGCAGGCCAGACCCGTTCTTCGAACAGATTCAGGATAAGCTGGCTGCGCTCAACGCGGAGGGCTGCAAGGCAGAGAAAGGCAGCCCGGTCCCTGCCGGATCTGTGAGCTTGCTGACGATGAGGCAGCACGTGCACATATACTACAGATACGTTGGGTCACTGACCACGCCACCGTGCGCCGAGAACGTGATCTGGAACATCCCTGCCATGCCGAGAGAGATGACACCGCAGCAGGCCGCCGATCTGATGGCTCCCCTGGACGAAGGCTACCGCCGGAACAGCAGGCCGACGCAGCAGATGAACGGCCGCACCGTGCAGCTCTACCACAGGTTCTGGGGGAAGAAGAAGAGGAGGAGCTCCCCGTAGGCTGACGACGACGACGTACGACGACGCGCTGGCAGCGCCATCGATCCATCCCGGCCGATGGAGATCGCTGCGTGTTTTGGGGTCCCTTGTGTTGTGTTCTGTCCAGCAGTAGTAGTTTGTTTCTGAAGTCGTGTGTTTATAGCGTCTAGGTTTGCTTTCTTATTTTGGTTACCGGCCATAGTTTGCCCCGGTTTTGCTAGCAGTCCTGAACTGGCTTTGATTTCTGTACTAAGAGACCGGTCTTTTGTCACCCTCTTTAATTACCTACTAATGAAGAACTACTGAGTTCTCAAAAAA]
[+] EMBL AK059525 [TCTGTTCTTGCCCTGTGGTTTCTTCTCCGTTTGCAGGCTTTATTGCATTGCAGGAAAAGATGGCGGCTTCTCATGGAAATGCGATCTTTGTTCTGCTGCTGTGCACTCTCTTTCTCCCGTCCCTTGCATGTGACAGCGGTGGCGTGAAGTTTGGGTACACTGGTTCTATCGGCCCTGACTTCTGGGGGAATTTGAGTGCCGACTTCACGCGTTGCTCGAACGGAAAGCAGCAGTCCCCAATTGACATCGACACCAACAACCTGGTTCATGAACTGAATATGGAGCCACTCCATAGAAATTATACCGCTGCAAATGCTACTCTTGTCGACAACATCTTCAACGTCGCGCTGCGGTACGAAGAGGCAGCAGGGGTTCTGAGCATTAACGGGGTGAAGTACACGCTGAAGCAGATGCACTGGCACTCTCCTTCCGAGCACACCATCAACGGCTTCAGGTTCCCACTGGAGCTCCACATGGTTCACACCAACGAAAATGGCAACATCACCGTTCTGGCCTTTCTCTACCGATTTGGCAGGCCAGACCCGTTCTTCGAACAGATTCAGGATAAGCTGGCTGCGCTCAACGCGGAGGGCTGCAAGGCAGAGAAAGGCAGCCCGGTCCCTGCCGGATCTGTGAGCTTGCTGACGATGAGGCAGCACGTGCACATATACTACAGATACGTTGGGTCACTGACCACGCCACCGTGCGCCGAGAACGTGATCTGGAACATCCCTGCCATGCCGAGAGAGATGACACCGCAGCAGGCCGCCGATCTGATGGCTCCCCTGGACGAAGGCTACCGCCGGAACAGCAGGCCGACGCAGCAGATGAACGGCCGCACCGTGCAGCTCTACCACAGGTTCTGGGGGAAGAAGAAGAGGAGGAGCTCCCCGTAGGCTGACGACGACGACGTACGACGACGCGCTGGCAGCGCCATCGATCCATCCCGGCCGATGGAGATCGCTGCGTGTTTTGGGGTCCCTTGTGTTGTGTTCTGTCCAGCAGTAGTAGTTTGTTTCTGAAGTCGTGTGTTTATAGCGTCTAGGTTTGCTTTCTTATTTTGGTTACCGGCCATAGTTTGCCCCGGTTTTGCTAGCAGTCCTGAACTGGCTTTGATTTCTGTACTAAGAGACCGGTCTTTTGTCACCCTCTTTAATTACCTACTAATGAAGAACTACTG ]
[-] EMBL CF293801 [ GGACGAAGGCTACCGCCGGAACAGCAGGCCGACGCAGCAGATGAACGGCCGCACCGTGCAGCTCTACCACAGGTTCTGGGGGAAGAAGAAGAGGAGGAGCTCCCCGTAGGCTGACGACGACGACGTACGACGACGCGCTGGCAGCGCCATCGATCCATTCCGGCCGATGGAGATCGCTGCGTGTTTTGGGGTCCCTTGTGTCGTGTTCTGTCCAGCAGTAGTAGTTTGTTTCTGAAGTCGTGTGTTTATAGAGTCTAGGTTTGCTTTCTTATTTTGGTTACCGGCCATAGTTTGCCCCGGTTTTGCTAGCAGTCTTGAACTGGCTTTGATTTCTGTACTAAGAGACCGGTCTTTTGTCACCCTCTTTAATTACCTACTAATGAGAAACTACTGAGTTCTCAAAAAA]
consensusID : consensus_6208#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence
[AGGCCAGACCCGTTCTTCGAACAGATTCAGGATAAGCTGGCTGCGCTCAACGCGGAGGGCTGCAAGGCAGAGAAAGGCAGCCCGGTCCCTGCCGGATCTGTGAGCTTGCTGACGATGAGGCAGCACGTGCACATATACTACAGATACGTTGGGTCACTTACCACACCACCGTGCGCCGAGAACGTGATCTGGAACATCCCTGCCATGCCGAGAGAGATGACACCGCAGCAGGCCGCCGATCTGATGGCTCCCCTGGACGAAGGCTACCGCCGCAACAGCAGGCCGACGCAGCAGATGAACGGCCGCACCGTGCAGCTCTACCACAGGTTCTGGGGGAAGAAGAAGAGGAGGAGCTCCCCGTAGGCTGACGACGACGACGTACGACGACGCGCTGGCAGCGCCATCGATCCATTCCGGCCGATGGAGATCGCTGCGTGTTCTGGGGTCCCTTGTGTTGTGTTCTGTCCAGCAGCAGTAGTTTGTTTCTGAAGTCGTGTTTATAGCGTCTAGGTTTGCTTTCTTATTTTGGTTACCGGCCATAGATTGCCCCGGTTTTGCTAGCAGTCTTGAACTCTGAAGTTGTTCAGTTTGTCATTTAGGGCTTTGATTTCTGTACTAAGAGACCGGTCTTTTGTCACCCTCTTTAATTACCTACTAATGAAGAACTACTGAGTTCTCAAAAAAA]
[-] EMBL CA762709 [AGGCCAGACCCGTTCTTCGAACAGATTCAGGATAAGCTGGCTGCGCTCAACGCGGAGGGCTGCAAGGCAGAGAAAGGCAGCCCGGTCCCTGCCGGATCTGTGAGCTTGCTGACGATGAGGCAGCACGTGCACATATACTACAGATACGTTGGGTCACTTACCACACCACCGTGCGCCGAGAACGTGATCTGGAACATCCCTGCCATGCCGAGAGAGATGACACCGCAGCAGGCCGCCGATCTGATGGCTCCCCTGGACGAAGGCTACCGCCGCAACAGCAGGCCGACGCAGCAGATGAACGGCCGCACCGTGCAGCTCTACCACAGGTTCTGGGGGAAGAAGAAGAGGAGGAGCTCCCCGTAGGCTGACGACGACGACGTACGACGACGCGCTGGCAGCGCCATCGATCCATTCCGGCCGATGGAGATCGCTGCGTGTTCTGGGGTCCCTTGTGTTGTGTTCTGTCCAGCAGCAGTAGTTTGTTTCTGAAGTCGTGTTTATAGCGTCTAGGTTTGCTTTCTTATTTTGGTTACCGGCCATAGATTGCCCCGGTTTTGCTAGCAGTCTTGAACTCTGAAGTTGTTCAGTTTGTCATTTAGGGCTTTGATTTCTGTACTAAGAGACCGGTCTTTTGTCACCCTCTTTAATTACCTACTAATGAAGAACTACTGAGTTCTCAAAAAAA]
consensusID : consensus_6208#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 490 fasta sequence
[CGCCCAAGTTAGCACCTTCACCAGCAGCAGCGTTCTTGCTCTTGGAAATCTTCTGGCCTTCGAAGATTCCTGCAGCCGTCGAGCAAAGAGGAACATCTACTAGTCGGAGCACGGCCACTTTGGTTCCAGGGACCAAACTCCAAAGGGTTGAAGCTGATCTGCATATAGCAAAGTAGAGGCTTTATTGCATTGCAGGAAAAGATGGCAGCTTCTCATGGAAATGCGATCTTTGTTCTGCTGCTGTGCACTCTCTTTCTCCCGTCCCTTGCATGTGACAGCGGTGGCGTGAAGTTTGGGTACACTGGTTCTATCGGCCCTGACTTCTGGGGGAATTTGAGTGCCGACTTCACGCGTTGCTCGAACGGAAAGCAGCAGTCCCCAATTGACATCGACACCAACAACCTGGTTCATGAACTGAATATGGAGCCACTCCATAGAAATTATACCGCTGCAAATGCTACTCTTGTCGACAACATCTTCAACGTCGCGC]
[+] EMBL CF293800 [CGCCCAAGTTAGCACCTTCACCAGCAGCAGCGTTCTTGCTCTTGGAAATCTTCTGGCCTTCGAAGATTCCTGCAGCCGTCGAGCAAAGAGGAACATCTACTAGTCGGAGCACGGCCACTTTGGTTCCAGGGACCAAACTCCAAAGGGTTGAAGCTGATCTGCATATAGCAAAGTAGAGGCTTTATTGCATTGCAGGAAAAGATGGCAGCTTCTCATGGAAATGCGATCTTTGTTCTGCTGCTGTGCACTCTCTTTCTCCCGTCCCTTGCATGTGACAGCGGTGGCGTGAAGTTTGGGTACACTGGTTCTATCGGCCCTGACTTCTGGGGGAATTTGAGTGCCGACTTCACGCGTTGCTCGAACGGAAAGCAGCAGTCCCCAATTGACATCGACACCAACAACCTGGTTCATGAACTGAATATGGAGCCACTCCATAGAAATTATACCGCTGCAAATGCTACTCTTGTCGACAACATCTTCAACGTCGCGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6208#0 TCTGTTCTTGCCCTGTGGTTTCTTCTCCGTTTGCAGGCTTTATTGCATTGCAGGAAAAGA 60
consensus_6208#1 ------------------------------------------------------------
consensus_6208#2 ------------------------------------------------------------
consensus_6208#0 TGGCGGCTTCTCATGGAAATGCGATCTTTGTTCTGCTGCTGTGCACTCTCTTTCTCCCGT 120
consensus_6208#1 ------------------------------------------------------------
consensus_6208#2 ------------------------------------------------------------
consensus_6208#0 CCCTTGCATGTGACAGCGGTGGCGTGAAGTTTGGGTACACTGGTTCTATCGGCCCTGACT 180
consensus_6208#1 ------------------------------------------------------------
consensus_6208#2 ------------------------------------------------------------
consensus_6208#0 TCTGGGGGAATTTGAGTGCCGACTTCACGCGTTGCTCGAACGGAAAGCAGCAGTCCCCAA 240
consensus_6208#1 ------------------------------------------------------------
consensus_6208#2 ------------------------------------------------------------
consensus_6208#0 TTGACATCGACACCAACAACCTGGTTCATGAACTGAATATGGAGCCACTCCATAGAAATT 300
consensus_6208#1 ------------------------------------------------------------
consensus_6208#2 ------------------------------------------------------------
consensus_6208#0 ATACCGCTGCAAATGCTACTCTTGTCGACAACATCTTCAACGTCGCGCTGCGGTACGAAG 360
consensus_6208#1 ------------------------------------------------------------
consensus_6208#2 ------------------------------------------------------------
consensus_6208#0 AGGCAGCAGGGGTTCTGAGCATTAACGGGGTGAAGTACACGCTGAAGCAGATGCACTGGC 420
consensus_6208#1 ------------------------------------------------------------
consensus_6208#2 ------------------------------------------------------------
consensus_6208#0 ACTCTCCTTCCGAGCACACCATCAACGGCTTCAGGTTCCCACTGGAGCTCCACATGGTTC 480
consensus_6208#1 ------------------------------------------------------------
consensus_6208#2 ------------------------------------------------------------
consensus_6208#0 ACACCAACGAAAATGGCAACATCACCGTTCTGGCCTTTCTCTACCGATTTGGCAGGCCAG 540
consensus_6208#1 -----------------------------------------------------AGGCCAG 7
consensus_6208#2 ------------------------------------------------------------
consensus_6208#0 ACCCGTTCTTCGAACAGATTCAGGATAAGCTGGCTGCGCTCAACGCGGAGGGCTGCAAGG 600
consensus_6208#1 ACCCGTTCTTCGAACAGATTCAGGATAAGCTGGCTGCGCTCAACGCGGAGGGCTGCAAGG 67
consensus_6208#2 ------------------------------------------------------------
consensus_6208#0 CAGAGAAAGGCAGCCCGGTCCCTGCCGGATCTGTGAGCTTGCTGACGATGAGGCAGCACG 660
consensus_6208#1 CAGAGAAAGGCAGCCCGGTCCCTGCCGGATCTGTGAGCTTGCTGACGATGAGGCAGCACG 127
consensus_6208#2 ------------------------------------------------------------
consensus_6208#0 TGCACATATACTACAGATACGTTGGGTCACTGACCACGCCACCGTGCGCCGAGAACGT-- 718
consensus_6208#1 TGCACATATACTACAGATACGTTGGGTCACTTACCACACCACCGTGCGCCGAGAACGT-- 185
consensus_6208#2 --CGCCCAAGTTA---GCACCTTCA-CCAGCAGCAGCGTTCTTGCTCTTGGAAATCTTCT 54
* * * ** ** ** ** * * * * ** * * *
consensus_6208#0 -GATCTGGAACATCCCTGCCAT-GCCGAGAGAGATGACACCGCAGCAGGCCGCCGATCTG 776
consensus_6208#1 -GATCTGGAACATCCCTGCCAT-GCCGAGAGAGATGACACCGCAGCAGGCCGCCGATCTG 243
consensus_6208#2 GGCCTTCGAAGATTCCTGCAGCCGTCGAGCAAAGAGGAACATCTACTAGTCG--GAGC-- 110
* * *** ** ***** * **** * * ** * * * ** ** *
consensus_6208#0 ATGGCTCCCCTGGACGAAGGCTACCGCCGGAACAGCAGGCCGACGCAGCAGATGAACG-G 835
consensus_6208#1 ATGGCTCCCCTGGACGAAGGCTACCGCCGCAACAGCAGGCCGACGCAGCAGATGAACG-G 302
consensus_6208#2 ACGGCCACTTTGGTTCCAGG-----GACCAAACTCCAAAGGGTTGAAGCTGATCTGCATA 165
* *** * *** *** * * *** ** * * *** *** *
consensus_6208#0 CCGCACCGTGCAG-CTCTACCACAGGTTCTGGGGGAAGAAGAAGAGGAGGAGCTCCCCGT 894
consensus_6208#1 CCGCACCGTGCAG-CTCTACCACAGGTTCTGGGGGAAGAAGAAGAGGAGGAGCTCCCCGT 361
consensus_6208#2 TAGCAAAGTAGAGGCTTTATTGCA--TTGCAGGAAAAGATG-------GCAGCTTCTCAT 216
*** ** ** ** ** ** ** ** **** * * **** * * *
consensus_6208#0 AGGCTGACGA-CGACGACGTACGACGACGCGCTGGCAGCGCCATCGATCCATCCCGGCCG 953
consensus_6208#1 AGGCTGACGA-CGACGACGTACGACGACGCGCTGGCAGCGCCATCGATCCATTCCGGCCG 420
consensus_6208#2 GGAAATGCGATCTTTGTTCTGCTGCTGTGCACTCTC--TTTCTCCCGTCCCTTGCATGTG 274
* *** * * * * * ** ** * * * *** * * *
consensus_6208#0 ATGGAGATCGCTGCGTGTTTTGGGGTCCCTTGTGTTGT--GTTCTGTCCAGCAGTAGTAG 1011
consensus_6208#1 ATGGAGATCGCTGCGTGTTCTGGGGTCCCTTGTGTTGT--GTTCTGTCCAGCAGCAGTAG 478
consensus_6208#2 ACAGCGGTGGC-GTGAAGTTTGGGTACACTGGTTCTATCGGCCCTGACTTCTGGGGGAAT 333
* * * * ** * * * **** * ** ** * * * *** * * * *
consensus_6208#0 TTTGTTTCTGAAGTCGTGTGTTTATAGCGTCTAGGTTTGCTTTCTTATTTTGGTTACCGG 1071
consensus_6208#1 TTTGTTTCTGAAGTCGTGT--TTATAGCGTCTAGGTTTGCTTTCTTATTTTGGTTACCGG 536
consensus_6208#2 TTGAGTGCCGACTTCACGCGTTGCTCGAACGGAAAGCAGCAGTCCCCAATTGAC-ATCGA 392
** * * ** ** * * * * * ** ** *** * **
consensus_6208#0 CCATAGTTTGCCCCGGTTTTGCTAGCAGTCCTGAACT----------------------- 1108
consensus_6208#1 CCATAGATTGCCCCGGTTTTGCTAGCAGTCTTGAACTCTGAAGTTGTTCAGTTTGTCATT 596
consensus_6208#2 C-ACCAACAACCTGGTTCATGAACTGAATATGGAGCC-----------------ACTCCA 434
* * ** * * ** * * ** *
consensus_6208#0 ---GGCTTTGATTTCTGTACTAAGAGACCGGTCTT-TTGTCACCCTCTTTAATTACCTAC 1164
consensus_6208#1 TAGGGCTTTGATTTCTGTACTAAGAGACCGGTCTT-TTGTCACCCTCTTTAATTACCTAC 655
consensus_6208#2 TAGAAATTATACCGCTGCA----AATGCTACTCTTGTCGACAACATCTTCAACGTCGCGC 490
** * *** * * * **** * * ** * **** ** * *
consensus_6208#0 TAATGAAGAACTACTGAGTTCTCAAAAAA- 1193
consensus_6208#1 TAATGAAGAACTACTGAGTTCTCAAAAAAA 685
consensus_6208#2 ------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||