These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6209#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1607 fasta sequence [TATAGATAATCTGTTGATGATGCTCTAAACAGTACTATCAATGCAATTTACTCGTAAATGAACAAACCCTATGTCTCACAAAATTTTCTTCCCAAAAGGCCTACAGGAACGCGCTANTCTTGATTCTGGAGCGATTCCCGCAGCCTAACCAGAAGCCCCATCCAATCCAGGTCGACCAGCGCGGCGGATCCAGAGCCGTAGCTCCTCGGAGTCCCTGTCTCTGTGGACGCTCTCACCCTAATCCGACGCCGGGCCTCTCCGATCTTCCTTCGCCTTGTGCTGTGGCTTCTCTTCCCCCTCTATATATCCCTATCAGCGAGATGCTCCACTCATGGCGGCATCTACAACGGGCTTNCCGGTTTTCGTATGGATCAACAACAACCAGCATTGGANGGAAAGGGGAGAACAAATGGGGCAAGCCATTTCGGAGCAGATGCTTCCCCCCTCATGCCAATGCATCTTTGTACAACACTGCCCAAGGCGACCACTGAGCTGTCACTGAAGAGATGTATCGAGCAGAGAAGAGAGGGGGAATTAATGGGCTCGTTGTTAGCCATTCCGCTGTTGACATGTTCTCGATGACAATCATTGAGAATTCAAGACACCGTGATGGTTCTATATATAGAAATAAGGCCTTCGAAGGACATTTCTGTATCACTAACCGCGATGAGACTCGGTTGGAGCCAATGATGTTCTCGGAGCCAACAGATTGCCGACCTAGTTGGGAAACTTGCAGTATGCATTCAGCATGTGCCATGATGCAAATTTTCTCACTAAAGTTGGCTAAAATTCCTATTGACAATGACTGCATACAATTATATGGATACATAGCAGTGCGGGATGATTTGGATAAATTGCTTAATTATGTTGTCAACTATAGCAGGGATAATCCCATCATTATGCGGCAGGGAGATCTGATTGAAATGACTGGCCCCAAGCGAGGCATATCAATGTGTTGCTCTGTTCTATTGGAGTTTGACATGAGGATAAAAAAAGGAGAGTAAGAAAAAGATGACCTACAGTTAATTGATGGAGCAATAGATTATATCGGGCTAATTACAGCAACGTTTCCATTCACAAAACGCATTAATGGTGATTGTGGTGCAGTTGATATCACTTTAGCACGTGTTTACTGGGCCGTAGAGGCCACCATACAAGTTATCATATCAGATGTGCAAAGTGGTTTCAATTTATATCTCAGTTCCTTGTGTTTTGTTAGTGATGTATGGAAAGAAATTCAACTCTTCAATGGCCCTATTGGTGAGTCATGTGGCTTAAGAAGATATGTGGTTGCTGTATCCTTGGACACTTGGATGCATTTGAAGTTGAAGGTAGGCCAAAAAGGCTCTAACCATTATGTTGAACGCTATTGTTCTTTCAAAGCAATCAACCATGGATGTTCCAGTCAACAAATATTGGGTGAGCTTGCATCTATCTCGATGAAGGTGACCTGGTCAACTTTACTAGATTAAACTCCTGGAATGTGTTTCTTACCAACCGTCACAAATAAGTGATGTTTTTATGATGCATGCAGTCAAGATGTTAAACTTTGACCACTAATATCTCTTTGAATATTTAGATTCAACTTTTAGAAATATTACGGCTAG] [+] EMBL C72977 [TATAGATAATCTGTTGATGATGCTCTAAACAGTACTATCAATGCAATTTACTCGTAAATGAACAAACCCTATGTCTCACAAAATTTTCTTCCCAAAAGGCCTACAGGAACGCGCTANTCTTGATTCTGGAGCGATTCCCGCAGCCTAACCAGAAGCCCCATCCAATCCAGGTCGACCAGCGCGGCGGATCCAGAGCCGTAGCTCCTCGGAGTCCCTGTCTCTGTGGACGCTCTCACCCTAATCCGACGCCGGGCCTCTCCGATCTTCCTTCGCCTTGTGCTGTGGCTTCTCTTCCCCCTCTATATATCCCTATCAGCGAGATGCTCCACTCATGGCGGCATCTACAACGGGCTTNCCGGTTTTCGTATGGATCAACAACAACCAGCATTGGANGGA ] [+] EMBL AK121936 [ CAGAGCCGTAGCTCCTCGGAGTCCCTGTCTCTGTGGACGCTCTCACCCTAATCCGACGCCGGGCCTCTCCGATCTTCCTTCGCCTTGTGCTGTGGCTTCTCTTCCCCCTCTATATATCCCTATCAGCGAGATGCTCCACTCATGGCGGCATCTACAACGGGCTTCCCGGTTTTCGTATGGATCAACAACAACCAGCATTGGAGGGAAAGGGGAGAACAAATGGGGCAAGCCATTTCGGAGCAGATGCTTCCCCCCTCATGCCAATGCATCTTTGTACAACACTGCCCAAGGCGACCACTGAGCTGTCACTGAAGAGATGTATCGAGCAGAGAAGAGAGGGGGAATTAATGGGCTCGTTGTTAGCCATTCCGCTGTTGACATGTTCTCGATGACAATCATTGAGAATTCAAGACACCGTGATGGTTCTATATATAGAAATAAGGCCTTCGAAGGACATTTCTGTATCACTAACCGCGATGAGACTCGGTTGGAGCCAATGATGTTCTCGGAGCCAACAGATTGCCGACCTAGTTGGGAAACTTGCAGTATGCATTCAGCATGTGCCATGATGCAAATTTTCTCACTAAAGTTGGCTAAAATTCCTATTGACAATGACTGCATACAATTATATGGATACATAGCAGTGCGGGATGATTTGGATAAATTGCTTAATTATGTTGTCAACTATAGCAGGGATAATCCCATCATTATGCGGCAGGGAGATCTGATTGAAATGACTGGCCCCAAGCGAGGCATATCAATGTGTTGCTCTGTTCTATTGGAGTTTGACATGAGGATAAAAAAAGGAGAGTAAGAAAAAGATGACCTACAGTTAATTGATGGAGCAATAGATTATATCGGGCTAATTACAGCAACGTTTCCATTCACAAAACGCATTAATGGTGATTGTGGTGCAGTTGATATCACTTTAGCACGTGTTTACTGGGCCGTAGAGGCCACCATACAAGTTATCATATCAGATGTGCAAAGTGGTTTCAATTTATATCTCAGTTCCTTGTGTTTTGTTAGTGATGTATGGAAAGAAATTCAACTCTTCAATGGCCCTATTGGTGAGTCATGTGGCTTAAGAAGATATGTGGTTGCTGTATCCTTGGACACTTGGATGCATTTGAAGTTGAAGGTAGGCCAAAAAGGCTCTAACCATTATGTTGAACGCTATTGTTCTTTCAAAGCAATCAACCATGGATGTTCCAGTCAACAAATATTGGGTGAGCTTGCATCTATCTCGATGAAGGTGACCTGGTCAACTTTACTAGATTAAACTCCTGGAATGTGTTTCTTACCAACCGTCACAAATAAGTGATGTTTTTATGATGCATGCAGTCAAGATGTTAAACTTTGACCACTAATATCTCTTTGAATATTTAGATTCAACTTTTAGAAATATTACGGCTAG] [+] EMBL AU172567 [ ATATCACTTTAGCACGTGTTTACTGGGCCGTAGAGGCCACCATACAAGTTATCATATCAGATGTGCAAAGTGGTTTCAATTTATATCTCAGTTCCTTGTGTTTTGTTAGTGATGTATGGAAAGAAATTCAACTCTTCAATGGCCCTATTGGTGAGTCATGTGGCTTAAGAAGATATGTGGTTGCTGTATCCTTGGACACTTGGATGCATTTGAAGTTGAAGGTAGGCCAAAAAGGCTCTAACCATTATGTTGAACGCTATTGTTCTTTCAAAGCAATCAACCATGGATGTTCCAGTCAACAAATATTGGGTGAGCTTGCATCTATCTCGATGAAGGTGACCTGGTCAACTTTACTAGATTAAACTCCTGGAATGTGTTTCTTACCAACCGTCACAAATAAGTGATGTTTTTATGATGCATGCAaaaa ] consensusID : consensus_6209#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 703 fasta sequence [CGGATCCAGAGCCGTAGCTCCTCGGAGTCCCTGTCTCTGTGGACGCTCTCACCCTAATCCGACGCCGGGCCTCTCCGATCTTCCTTCGCCTTGTGCTGTGGCTTCTCTTCCCCCTCTATATACCCCTATCAGCGAGATGCTCCACTCATGGCGGCATCTACAACGGGCTTCCCGGTTTTCGTATGGATCAACAACAACCAGCATTGGAGGGGAAGGGGAGAACAAATGGGGCAAGCCATTTCGGAGCAGATGCTTCCCCCCTCATGCCAATGCATCTTTGTACAACACTGCCCAAGGCGACCACTGAGCTGTCACTGAAGAGATGTATCGAGCAGAGAAGAGAGGGGGAATTAATGGGCTCGTTGTTAGCCATTCCGCTGTTGACATGTTCTCGATGACAATCATTGAGAATTCAAGACACCGTGATGGTTCTATATATAGAAATAAGGCCTTTGAAGGACATTTCTGTATCACTAACCGCGATGAGAGTAAGTGATCAAAACCTTCTCCTTCTTTTTCTAATTTGATATGATTTGTTTTAGTACTAATAAATATAATATGGATTCTGGTAACCAAAATGCCAAGTAAATTTGTTACTCTAACTACAATATGATTTCTTTATATTTTCTTCTTTCCTACTATTGGTTTCATTCGTATGTGCAATCAATCCACTTAGGTGAAATCCAAATATTGGTGTAATTCT] [+] EMBL CA765279 [CGGATCCAGAGCCGTAGCTCCTCGGAGTCCCTGTCTCTGTGGACGCTCTCACCCTAATCCGACGCCGGGCCTCTCCGATCTTCCTTCGCCTTGTGCTGTGGCTTCTCTTCCCCCTCTATATACCCCTATCAGCGAGATGCTCCACTCATGGCGGCATCTACAACGGGCTTCCCGGTTTTCGTATGGATCAACAACAACCAGCATTGGAGGGGAAGGGGAGAACAAATGGGGCAAGCCATTTCGGAGCAGATGCTTCCCCCCTCATGCCAATGCATCTTTGTACAACACTGCCCAAGGCGACCACTGAGCTGTCACTGAAGAGATGTATCGAGCAGAGAAGAGAGGGGGAATTAATGGGCTCGTTGTTAGCCATTCCGCTGTTGACATGTTCTCGATGACAATCATTGAGAATTCAAGACACCGTGATGGTTCTATATATAGAAATAAGGCCTTTGAAGGACATTTCTGTATCACTAACCGCGATGAGAGTAAGTGATCAAAACCTTCTCCTTCTTTTTCTAATTTGATATGATTTGTTTTAGTACTAATAAATATAATATGGATTCTGGTAACCAAAATGCCAAGTAAATTTGTTACTCTAACTACAATATGATTTCTTTATATTTTCTTCTTTCCTACTATTGGTTTCATTCGTATGTGCAATCAATCCACTTAGGTGAAATCCAAATATTGGTGTAATTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6209#0 TATAGATAATCTGTTGATGATGCTCTAAACAGTACTATCAATGCAATTTACTCGTAAATG 60 consensus_6209#1 ------------------------------------------------------------ consensus_6209#0 AACAAACCCTATGTCTCACAAAATTTTCTTCCCAAAAGGCCTACAGGAACGCGCTANTCT 120 consensus_6209#1 ------------------------------------------------------------ consensus_6209#0 TGATTCTGGAGCGATTCCCGCAGCCTAACCAGAAGCCCCATCCAATCCAGGTCGACCAGC 180 consensus_6209#1 ------------------------------------------------------------ consensus_6209#0 GCGGCGGATCCAGAGCCGTAGCTCCTCGGAGTCCCTGTCTCTGTGGACGCTCTCACCCTA 240 consensus_6209#1 ----CGGATCCAGAGCCGTAGCTCCTCGGAGTCCCTGTCTCTGTGGACGCTCTCACCCTA 56 ******************************************************** consensus_6209#0 ATCCGACGCCGGGCCTCTCCGATCTTCCTTCGCCTTGTGCTGTGGCTTCTCTTCCCCCTC 300 consensus_6209#1 ATCCGACGCCGGGCCTCTCCGATCTTCCTTCGCCTTGTGCTGTGGCTTCTCTTCCCCCTC 116 ************************************************************ consensus_6209#0 TATATATCCCTATCAGCGAGATGCTCCACTCATGGCGGCATCTACAACGGGCTTNCCGGT 360 consensus_6209#1 TATATACCCCTATCAGCGAGATGCTCCACTCATGGCGGCATCTACAACGGGCTTCCCGGT 176 ****** *********************************************** ***** consensus_6209#0 TTTCGTATGGATCAACAACAACCAGCATTGGANGGAAAGGGGAGAACAAATGGGGCAAGC 420 consensus_6209#1 TTTCGTATGGATCAACAACAACCAGCATTGGAGGGGAAGGGGAGAACAAATGGGGCAAGC 236 ******************************** ** ************************ consensus_6209#0 CATTTCGGAGCAGATGCTTCCCCCCTCATGCCAATGCATCTTTGTACAACACTGCCCAAG 480 consensus_6209#1 CATTTCGGAGCAGATGCTTCCCCCCTCATGCCAATGCATCTTTGTACAACACTGCCCAAG 296 ************************************************************ consensus_6209#0 GCGACCACTGAGCTGTCACTGAAGAGATGTATCGAGCAGAGAAGAGAGGGGGAATTAATG 540 consensus_6209#1 GCGACCACTGAGCTGTCACTGAAGAGATGTATCGAGCAGAGAAGAGAGGGGGAATTAATG 356 ************************************************************ consensus_6209#0 GGCTCGTTGTTAGCCATTCCGCTGTTGACATGTTCTCGATGACAATCATTGAGAATTCAA 600 consensus_6209#1 GGCTCGTTGTTAGCCATTCCGCTGTTGACATGTTCTCGATGACAATCATTGAGAATTCAA 416 ************************************************************ consensus_6209#0 GACACCGTGATGGTTCTATATATAGAAATAAGGCCTTCGAAGGACATTTCTGTATCACTA 660 consensus_6209#1 GACACCGTGATGGTTCTATATATAGAAATAAGGCCTTTGAAGGACATTTCTGTATCACTA 476 ************************************* ********************** consensus_6209#0 ACCGCGATGAGACTCGGTTGGAGCCAATGATGTTCTCGGAGCCAACAGATTGCCGACCTA 720 consensus_6209#1 ACCGCGATGAGAGTAAGT---GATCAA-AACCTTCTCCTTCTT------TTTCTAATTTG 526 ************ * ** *** * ***** ** * * * consensus_6209#0 GTTGGGAAACTTGCAGTATGCATTCAGCATGTGCCATGATGCAAATTTTCTCACTAAAGT 780 consensus_6209#1 ATATGATTTGTTTTAGTACTAATAAA--------TATAATATGGATTCTGGTAACCAAAA 578 * * ** **** ** * ** ** *** * * ** consensus_6209#0 TGGCTAAAATTCCTATTGACAATGACTGCA-TACAATTATATGGATACATAGCAGTGCGG 839 consensus_6209#1 TGCCAAGTAAATTTGTT-ACTCTAACTACAATATGATT-TCTTTATATTTTCTTCTTTCC 636 ** * * * * ** ** * *** ** ** *** * * *** * * consensus_6209#0 GATGATTTGGATAAATTGCTTAATTATGTTGTCAACTATAGCAGGGATAATCCCATCATT 899 consensus_6209#1 TACTATTGGTTTCATTCGTAT----GTGCAATCAATCCACTTAGGTGAAATCCAAATATT 692 * *** * * * * * * ** **** *** ***** * *** consensus_6209#0 ATGCGGCAGGGAGATCTGATTGAAATGACTGGCCCCAAGCGAGGCATATCAATGTGTTGC 959 consensus_6209#1 G------GTGTAATTCT------------------------------------------- 703 * * *** consensus_6209#0 TCTGTTCTATTGGAGTTTGACATGAGGATAAAAAAAGGAGAGTAAGAAAAAGATGACCTA 1019 consensus_6209#1 ------------------------------------------------------------ consensus_6209#0 CAGTTAATTGATGGAGCAATAGATTATATCGGGCTAATTACAGCAACGTTTCCATTCACA 1079 consensus_6209#1 ------------------------------------------------------------ consensus_6209#0 AAACGCATTAATGGTGATTGTGGTGCAGTTGATATCACTTTAGCACGTGTTTACTGGGCC 1139 consensus_6209#1 ------------------------------------------------------------ consensus_6209#0 GTAGAGGCCACCATACAAGTTATCATATCAGATGTGCAAAGTGGTTTCAATTTATATCTC 1199 consensus_6209#1 ------------------------------------------------------------ consensus_6209#0 AGTTCCTTGTGTTTTGTTAGTGATGTATGGAAAGAAATTCAACTCTTCAATGGCCCTATT 1259 consensus_6209#1 ------------------------------------------------------------ consensus_6209#0 GGTGAGTCATGTGGCTTAAGAAGATATGTGGTTGCTGTATCCTTGGACACTTGGATGCAT 1319 consensus_6209#1 ------------------------------------------------------------ consensus_6209#0 TTGAAGTTGAAGGTAGGCCAAAAAGGCTCTAACCATTATGTTGAACGCTATTGTTCTTTC 1379 consensus_6209#1 ------------------------------------------------------------ consensus_6209#0 AAAGCAATCAACCATGGATGTTCCAGTCAACAAATATTGGGTGAGCTTGCATCTATCTCG 1439 consensus_6209#1 ------------------------------------------------------------ consensus_6209#0 ATGAAGGTGACCTGGTCAACTTTACTAGATTAAACTCCTGGAATGTGTTTCTTACCAACC 1499 consensus_6209#1 ------------------------------------------------------------ consensus_6209#0 GTCACAAATAAGTGATGTTTTTATGATGCATGCAGTCAAGATGTTAAACTTTGACCACTA 1559 consensus_6209#1 ------------------------------------------------------------ consensus_6209#0 ATATCTCTTTGAATATTTAGATTCAACTTTTAGAAATATTACGGCTAG 1607 consensus_6209#1 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||