cluster # 621

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Oryza sativa
cluster # 621 cluster # 621 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_621#0 length = 492 sequences # 1

consensus_621#1 length = 229 sequences # 1

consensusID : consensus_621#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 492
fasta sequence

                              [GATCCCCTCCGTAACGGCTTGACAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACCCCCCTTAATTCTTCAAACAATTTTTTTTAAAACTTTGGCCTTTTCTTTGCCCCCAACCCCTTTTGGTACCTTCCAACAAAAGGCTTTTGATGCCCCCCATTTTTGGGTTAAAACACCTTTTTTAAGGCTTAAAAGGGGAAAAACCCTTTAAACCATCCCCCATTATTACCTATTACCAAACCATTCACCACCCACCTAATTCCCTTCATATTTTGGGGGGCCCAAGAAAAAACTTGTGAATACCGGGCTTAATCTCAGGGGTTTTGCCCCCCCCATATTTTTTTACCCCTTGCTTTGGGAACCCCCTTCCCTCCAAAGGGTTTTGAACCCCTCAAGTTGCCCTCCTTACTTTGTAAACCCTAATTTCGGGGTTCCCGGTAATTTTCCGAAAAACCTGAAACCCCAAAATCCCAA]

[+] EMBL CF327850             [GATCCCCTCCGTAACGGCTTGACAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACCCCCCTTAATTCTTCAAACAATTTTTTTTAAAACTTTGGCCTTTTCTTTGCCCCCAACCCCTTTTGGTACCTTCCAACAAAAGGCTTTTGATGCCCCCCATTTTTGGGTTAAAACACCTTTTTTAAGGCTTAAAAGGGGAAAAACCCTTTAAACCATCCCCCATTATTACCTATTACCAAACCATTCACCACCCACCTAATTCCCTTCATATTTTGGGGGGCCCAAGAAAAAACTTGTGAATACCGGGCTTAATCTCAGGGGTTTTGCCCCCCCCATATTTTTTTACCCCTTGCTTTGGGAACCCCCTTCCCTCCAAAGGGTTTTGAACCCCTCAAGTTGCCCTCCTTACTTTGTAAACCCTAATTTCGGGGTTCCCGGTAATTTTCCGAAAAACCTGAAACCCCAAAATCCCAA]




>consensus_621#0
GATCCCCTCCGTAACGGCTTGACAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTAACCCCCCTTAATTCTTCAAACAATTTTTTTTAAAACTTTGGCCTT
TTCTTTGCCCCCAACCCCTTTTGGTACCTTCCAACAAAAGGCTTTTGATGCCCCCCATTT
TTGGGTTAAAACACCTTTTTTAAGGCTTAAAAGGGGAAAAACCCTTTAAACCATCCCCCA
TTATTACCTATTACCAAACCATTCACCACCCACCTAATTCCCTTCATATTTTGGGGGGCC
CAAGAAAAAACTTGTGAATACCGGGCTTAATCTCAGGGGTTTTGCCCCCCCCATATTTTT
TTACCCCTTGCTTTGGGAACCCCCTTCCCTCCAAAGGGTTTTGAACCCCTCAAGTTGCCC
TCCTTACTTTGTAAACCCTAATTTCGGGGTTCCCGGTAATTTTCCGAAAAACCTGAAACC
CCAAAATCCCAA

consensusID : consensus_621#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 229
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACAAATATTTTTAAAACTTTTGATTATTTTTTGCCCCCAAACCCTTTTGGTACCTTCCAAAAAAAGGCTTTTGATGCCCCCCATTTTTTGGATAAAACAACTTTTTTAAGGCTTAAAAGGGGAAAAATCCTTTAAATCATTCCCCATTATTACCTATTACCAAACCATTCAACACC]

[+] EMBL CF320572             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACAAATATTTTTAAAACTTTTGATTATTTTTTGCCCCCAAACCCTTTTGGTACCTTCCAAAAAAAGGCTTTTGATGCCCCCCATTTTTTGGATAAAACAACTTTTTTAAGGCTTAAAAGGGGAAAAATCCTTTAAATCATTCCCCATTATTACCTATTACCAAACCATTCAACACC]




>consensus_621#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACAAATA
TTTTTAAAACTTTTGATTATTTTTTGCCCCCAAACCCTTTTGGTACCTTCCAAAAAAAGG
CTTTTGATGCCCCCCATTTTTTGGATAAAACAACTTTTTTAAGGCTTAAAAGGGGAAAAA
TCCTTTAAATCATTCCCCATTATTACCTATTACCAAACCATTCAACACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_621#0      GATCCCCTCCGTAACGGCTTGACAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
consensus_621#1      -----------------------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 31
                                                  *******************************

consensus_621#0      TTTTTTTTTTTTTTAACCCCCCTTAATTCTTCAAACAATTTTTTTTAAAACTTTGGCCTT 120
consensus_621#1      TTTTTTTTTTTTTT------------TTTTTAAAACAAATATTTTTAAAACTTTTGATTA 79
                     **************            ** ** ****** * ************* *  * 

consensus_621#0      TTCTTTGCCCCCAACCCCTTTTGGTACCTTCCAACAAAAGGCTTTTGATGCCCCCCATTT 180
consensus_621#1      TTTTTTGCCCCCAAACCCTTTTGGTACCTTCCAAAAAAAGGCTTTTGATGCCCCCCATTT 139
                     ** *********** ******************* *************************

consensus_621#0      TTGGGTTAAAACACCTTTTTTAAGGCTTAAAAGGGGAAAAACCCTTTAAACCATCCCCCA 240
consensus_621#1      TTTGGATAAAACAACTTTTTTAAGGCTTAAAAGGGGAAAAATCCTTTAAATCATTCCCCA 199
                     ** ** ******* *************************** ******** *** *****

consensus_621#0      TTATTACCTATTACCAAACCATTCACCACCCACCTAATTCCCTTCATATTTTGGGGGGCC 300
consensus_621#1      TTATTACCTATTACCAAACCATTCAACACC------------------------------ 229
                     ************************* ****                              

consensus_621#0      CAAGAAAAAACTTGTGAATACCGGGCTTAATCTCAGGGGTTTTGCCCCCCCCATATTTTT 360
consensus_621#1      ------------------------------------------------------------
                                                                                 

consensus_621#0      TTACCCCTTGCTTTGGGAACCCCCTTCCCTCCAAAGGGTTTTGAACCCCTCAAGTTGCCC 420
consensus_621#1      ------------------------------------------------------------
                                                                                 

consensus_621#0      TCCTTACTTTGTAAACCCTAATTTCGGGGTTCCCGGTAATTTTCCGAAAAACCTGAAACC 480
consensus_621#1      ------------------------------------------------------------
                                                                                 

consensus_621#0      CCAAAATCCCAA 492
consensus_621#1      ------------