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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6210#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1496 fasta sequence
[GTTGGTTGGGTAGAGTCGTCGCCGGAGTTCATGGGGGCTGAGGCGAAGGCGCCGCTGCTGGAGGGGAGGAGGGGCGCGACGCCGGCGCAGACGCTGGGCAACATCGTCGTCTCCATCGTCGGCACCGGCGTGCTCGGCCTCCCCTACGCCTTCCGCACCTCCGGCTGGCTCGCCGGAGCTCTCGGCGTCGCCGGCGCCGGCGCCGCCACCTTCTACTGCATGCTCCTCCTTCTGGATTGCAGAGACAAGCTACGGGAGCAAGAAGAGGTGGATCACGACGGCAACTACACCTATGGCGACCTCGGCGAGAAATGCTTCGGCGCCATTGGGAGATACTTCACCGAGGTCACCATCATCCTCTCCCAGACCGGCGGCTCCGTCGCCTACCTCGTCTTCATCGGCCAGAACATCTGCTCCGTCTTCCCCACCACCGCCGCCGGCGGCGAGGAGCCGCCGCGTCGCGTGTCGCCGGCAGCCGTCGTCCTCGCCGTGCTCCTGCCGGCCGAGGCGGCGCTCTCCTTCATCCGCTCGCTGTCGTCGCTGGCGCCGTTCAGCATCCTCGCCGACGCGTGCACCGTCCTCGCCGTGGCCACCGTCGTCAGGGAGGACGTCCAGCTCCTCGCCGGCCGCGGCGGGAGCCCATTCCAGGGGCGGAGCGCCCTCGCGGGGCTCTGGGGCGTCCCGTTCGCCTGCGGCGTCGCCGTGTTCTGCTTCGAGGGGTTCTGCCTGACGCTGGCGCTGGAGGCGTCCATGTCCGACCGGAGGAGGTTCCGCCCCGTGCTCCTCCACGCCATCGCCGGCGTCACCGCCGTCTACGTCTGCTTCGGCGTCTGCGGCTACCTCGCCTACGGCGACGTCACCAGAGACATCGTCACTCTCAATCTCCCCAACAACTGGTCCACCGCCGCCGTCAAGATCGTGCTGTGCGTCGCGCTGGCGCTCACGTTCCCGGTGATGATGCACCCGATCCACGAGATCGTGAAGGCCCGGCTGTTCCCGTCGACGGACGGGTGGGCGCGGAAGCGCGCGNCGGTGCAGGCGACCCGCGTGGCGGTGGTGGGCGCGGTGACGGCGGTGGCGTGCTTCGTGCCGGCGTTCGGGGAGTTCGCGGCGTTCGTGGGGAGCACGGTGTGTGCGCTGCTCTCCTTCGTGCTCCCGGCGCTGTTCCACCTCCGCCTCGTCGGAGCGGCGGCGAGCGCGTGGCGGCGCGCGGTGGACGGCGGCTTCTTGCTCCTTGGGCTGGCCTTCGCGGCCCATGGGCTTTACACGGTTGTCTCGGGCCTCTGAACTGGGCCGTAATGGGCTCTCCTCGCCGTCCAATCCCAATCCAGCAGCTTCTCTCTTCCAGTATATATTTTTCCAGACATTTTTCAAGACGTGTATAATGTACTACACTAGATTAGCATACTAGAATTTTTTTTTTCTTCCAATAATGTAAAAGCGTTACATTTGCAGCTAATTTTGCATGTAGGAACACAATTTCCTTATACTTTTTA]
[+] EMBL AK121940 [GTTGGTTGGGTAGAGTCGTCGCCGGAGTTCATGGGGGCTGAGGCGAAGGCGCCGCTGCTGGAGGGGAGGAGGGGCGCGACGCCGGCGCAGACGCTGGGCAACATCGTCGTCTCCATCGTCGGCACCGGCGTGCTCGGCCTCCCCTACGCCTTCCGCACCTCCGGCTGGCTCGCCGGAGCTCTCGGCGTCGCCGGCGCCGGCGCCGCCACCTTCTACTGCATGCTCCTCCTTCTGGATTGCAGAGACAAGCTACGGGAGCAAGAAGAGGTGGATCACGACGGCAACTACACCTATGGCGACCTCGGCGAGAAATGCTTCGGCGCCATTGGGAGATACTTCACCGAGGTCACCATCATCCTCTCCCAGACCGGCGGCTCCGTCGCCTACCTCGTCTTCATCGGCCAGAACATCTGCTCCGTCTTCCCCACCACCGCCGCCGGCGGCGAGGAGCCGCCGCGTCGCGTGTCGCCGGCAGCCGTCGTCCTCGCCGTGCTCCTGCCGGCCGAGGCGGCGCTCTCCTTCATCCGCTCGCTGTCGTCGCTGGCGCCGTTCAGCATCCTCGCCGACGCGTGCACCGTCCTCGCCGTGGCCACCGTCGTCAGGGAGGACGTCCAGCTCCTCGCCGGCCGCGGCGGGAGCCCATTCCAGGGGCGGAGCGCCCTCGCGGGGCTCTGGGGCGTCCCGTTCGCCTGCGGCGTCGCCGTGTTCTGCTTCGAGGGGTTCTGCCTGACGCTGGCGCTGGAGGCGTCCATGTCCGACCGGAGGAGGTTCCGCCCCGTGCTCCTCCACGCCATCGCCGGCGTCACCGCCGTCTACGTCTGCTTCGGCGTCTGCGGCTACCTCGCCTACGGCGACGTCACCAGAGACATCGTCACTCTCAATCTCCCCAACAACTGGTCCACCGCCGCCGTCAAGATCGTGCTGTGCGTCGCGCTGGCGCTCACGTTCCCGGTGATGATGCACCCGATCCACGAGATCGTGAAGGCCCGGCTGTTCCCGTCGACGGACGGGTGGGCGCGGAAGCGCGCGNCGGTGCAGGCGACCCGCGTGGCGGTGGTGGGCGCGGTGACGGCGGTGGCGTGCTTCGTGCCGGCGTTCGGGGAGTTCGCGGCGTTCGTGGGGAGCACGGTGTGTGCGCTGCTCTCCTTCGTGCTCCCGGCGCTGTTCCACCTCCGCCTCGTCGGAGCGGCGGCGAGCGCGTGGCGGCGCGCGGTGGACGGCGGCTTCTTGCTCCTTGGGCTGGCCTTCGCGGCCCATGGGCTTTACACGGTTGTCTCGGGCCTCTGAACTGGGCCGTAATGGGCTCTCCTCGCCGTCCAATCCCAATCCAGCAGCTTCTCTCTTCCAGTATATATTTTTCCAGACATTTTTCAAGACGTGTATAATGTACTACACTAGATTAGCATACTAGAATTTTTTTTTTCTTCCAATAATGTAAAAGCGTTACATTTGCAGCTAATTTTGCATGTAGGAACACAATTTCCTTATACTTTTTA]
[+] EMBL CA756265 [ AGTCGTCGCCGGAGTTCATGGGGGCTGAGGCGAAGGCGCCGCTGCTGGAGGGGAGGAGGGGCGCGACGCCGGCGCAGACGCTGGGCAACATCGTCGTCTCCATCGTCGGCACCGGCGTGCTCGGCCTCCCCTACGCCTTCCGCACCTCCGGCTGGCTCGCCGGAGCTCTCGGCGTCGCCGGCGCCGGCGCCGCCACCTTCTACTGCATGCTCCTCCTTCTGGATTGCAGAGACAAGCTACGGGAGCAAGAAGAGGTGGATCACGACGGCAACTACACCTATGGCGACCTCGGCGAGAAATGCTTCGGCGCCATTGGGAGATACTTCACCGAGGTCACCATCATCCTCTCCCAGACCGGCGGCTCCGTCGCCTACCTCGTCTTCATCGGCCAGAACATCTGCTCCGTCTTCCCCACCACCGCCGCCGGCGGCGAGGAGCCGCCGCGTCGCGTGTCGCCGGCAGCCGTCGTCCTCGCCGTGCTCCTGCCGGCCGAGGCGGCGCTCTCCTTCATCCGCTCGCTGTCGTCGCTGGCGCCGTTCAGCATCCTCGCCGACGCGTGCACCGTCCTCGCCGTGGCCACCGTCGTCAGGGAGGACGTCCAGCTCCT ]
[+] EMBL CB656899 [ GTCGGCACCGGCGTGCTCCCCCTCCCCTACGCCTTCCGCACCTCCGGCTGGCTCGCCGGAGCTCTCGGCGTCGCCGGCGCCGGCGCCGCCACCTTCTACTGCATGCTCCTCCTTCTGGATTGCAGACACAAGCTACCGGAGCAAGAAGAGGTGGATCACGACGGCAACTACACCTATGGCGACCTCGGCGAGAAATGCTTCGGCGCCATTGGGAGATACTTCACCGAGGTCACCATCATCCTCTCCCAGACCGGCGGCTCCGACGCCTACCTCGTCTTCATCCGCCAGAACATCTGCTCCGTCTTCCCCACCACCGCCGCCGGCGGCGAGGAGCCGCCGCGTCGCGTGTCGCCGGCAGCCGTCGTCCTCACCGTGCTCCTGCCGGCCGAGGAGGCGCTCTCCTTCATCCACTCGCTGTCGTCACTGGCGCCGTTCAGCATCCTCTCCGACGCGTGCACCGTCCTCGCCGTGGCCACCGTCGTCAGGGAGGACG ]
consensusID : consensus_6210#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence
[CAACTGGTCCACCGCCGCCGTCAAGGTCACCACCAAATCAAACATAAATTCTTTTAGAGTTCTTTGATCAAGTTGGCCATCAAGCACGATTTGATTATCCGATTCGCAGATCGTGCTGTGCGTCGCGCTGGCGCTCACGTTCCCGGTGATGATGCACCCGATCCACGAGATCGTGGAGGCGCGGCTGTTCCCGTCGGCGGGCGGGTGGGCGCGGAAGCGCGCGGCGGTGCAGGCGAGCCGCGTGGCGGTGGTGGGCGCGGTGACGGCGGTGGCGTGCTTCGTGCCGGCGTTCGGGGAGTTCGCGGCGTTCGTGGGGAGCACGGTGTGTGCGCTGCTCTCCTTCGTGCTCCCGGCGCTGTTCCACCTCCGCCTCGTCGGAGCGGCGGCGAGCGCGTGGCGGCGCGCGGTGGACGGCGGCTTCTTGCTCCTTGGGCTGGCCTTCGCGGCCCATGGGCTTTACACGGTTGTCTCGGGCCTCTGAACTGGGCCGTAATGGGCTCTCCTCGCCGTCCAATCCCAATCCAGCAGCTTCTCTCTTCCAGTATATATTTTTCCAGACATTTTTCAAGACGTGTATAATGTACTACACTAGATTAGCATACTAGAATTTTTTTTTTCTTCCAATAATGTAAAAGCGTTACATTTGCAGATGATTTTGCATGTAGGAACACAATTTCCTTATAAAAAAAAAGG]
[-] EMBL CB656900 [CAACTGGTCCACCGCCGCCGTCAAGGTCACCACCAAATCAAACATAAATTCTTTTAGAGTTCTTTGATCAAGTTGGCCATCAAGCACGATTTGATTATCCGATTCGCAGATCGTGCTGTGCGTCGCGCTGGCGCTCACGTTCCCGGTGATGATGCACCCGATCCACGAGATCGTGGAGGCGCGGCTGTTCCCGTCGGCGGGCGGGTGGGCGCGGAAGCGCGCGGCGGTGCAGGCGAGCCGCGTGGCGGTGGTGGGCGCGGTGACGGCGGTGGCGTGCTTCGTGCCGGCGTTCGGGGAGTTCGCGGCGTTCGTGGGGAGCACGGTGTGTGCGCTGCTCTCCTTCGTGCTCCCGGCGCTGTTCCACCTCCGCCTCGTCGGAGCGGCGGCGAGCGCGTGGCGGCGCGCGGTGGACGGCGGCTTCTTGCTCCTTGGGCTGGCCTTCGCGGCCCATGGGCTTTACACGGTTGTCTCGGGCCTCTGAACTGGGCCGTAATGGGCTCTCCTCGCCGTCCAATCCCAATCCAGCAGCTTCTCTCTTCCAGTATATATTTTTCCAGACATTTTTCAAGACGTGTATAATGTACTACACTAGATTAGCATACTAGAATTTTTTTTTTCTTCCAATAATGTAAAAGCGTTACATTTGCAGATGATTTTGCATGTAGGAACACAATTTCCTTATAAAAAAAAAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6210#0 GTTGGTTGGGTAGAGTCGTCGCCGGAGTTCATGGGGGCTGAGGCGAAGGCGCCGCTGCTG 60
consensus_6210#1 ------------------------------------------------------------
consensus_6210#0 GAGGGGAGGAGGGGCGCGACGCCGGCGCAGACGCTGGGCAACATCGTCGTCTCCATCGTC 120
consensus_6210#1 ------------------------------------------------------------
consensus_6210#0 GGCACCGGCGTGCTCGGCCTCCCCTACGCCTTCCGCACCTCCGGCTGGCTCGCCGGAGCT 180
consensus_6210#1 ------------------------------------------------------------
consensus_6210#0 CTCGGCGTCGCCGGCGCCGGCGCCGCCACCTTCTACTGCATGCTCCTCCTTCTGGATTGC 240
consensus_6210#1 ------------------------------------------------------------
consensus_6210#0 AGAGACAAGCTACGGGAGCAAGAAGAGGTGGATCACGACGGCAACTACACCTATGGCGAC 300
consensus_6210#1 ------------------------------------------------------------
consensus_6210#0 CTCGGCGAGAAATGCTTCGGCGCCATTGGGAGATACTTCACCGAGGTCACCATCATCCTC 360
consensus_6210#1 ------------------------------------------------------------
consensus_6210#0 TCCCAGACCGGCGGCTCCGTCGCCTACCTCGTCTTCATCGGCCAGAACATCTGCTCCGTC 420
consensus_6210#1 ------------------------------------------------------------
consensus_6210#0 TTCCCCACCACCGCCGCCGGCGGCGAGGAGCCGCCGCGTCGCGTGTCGCCGGCAGCCGTC 480
consensus_6210#1 ------------------------------------------------------------
consensus_6210#0 GTCCTCGCCGTGCTCCTGCCGGCCGAGGCGGCGCTCTCCTTCATCCGCTCGCTGTCGTCG 540
consensus_6210#1 ------------------------------------------------------------
consensus_6210#0 CTGGCGCCGTTCAGCATCCTCGCCGACGCGTGCACCGTCCTCGCCGTGGCCACCGTCGTC 600
consensus_6210#1 ------------------------------------------------------------
consensus_6210#0 AGGGAGGACGTCCAGCTCCTCGCCGGCCGCGGCGGGAGCCCATTCCAGGGGCGGAGCGCC 660
consensus_6210#1 ------------------------------------------------------------
consensus_6210#0 CTCGCGGGGCTCTGGGGCGTCCCGTTCGCCTGCGGCGTCGCCGTGTTCTGCTTCGAGGGG 720
consensus_6210#1 ------------------------------------------------------------
consensus_6210#0 TTCTGCCTGACGCTGGCGCTGGAGGCGTCCATGTCCGACCGGAGGAGGTTCCGCCCCGTG 780
consensus_6210#1 ------------------------------------------------------------
consensus_6210#0 CTCCTCCACGCCATCGCCGGCGTCACCGCCGTCTACGTCTGCTTCGGCGTCTGCGGCTAC 840
consensus_6210#1 -----------CAACTGGTCCACCGCCGCCGTCAAGGTC-ACCACCAAATCAAACATAAA 48
** * * * ******** * *** * * ** *
consensus_6210#0 CTCGCCTACGGCGACGTCACCAGAGACATCGTCACTCTCAATCTCCCCAACAACTGGTCC 900
consensus_6210#1 TTCTTTTAGAGTTCTTTGATCAAGTTGGCCATCAAGCACGATTTG---ATTATCCGATTC 105
** ** * * * ** * *** * * ** * * * * * * *
consensus_6210#0 ACCGCCGCCGTCAAGATCGTGCTGTGCGTCGCGCTGGCGCTCACGTTCCCGGTGATGATG 960
consensus_6210#1 GC-----------AGATCGTGCTGTGCGTCGCGCTGGCGCTCACGTTCCCGGTGATGATG 154
* ***********************************************
consensus_6210#0 CACCCGATCCACGAGATCGTGAAGGCCCGGCTGTTCCCGTCGACGGACGGGTGGGCGCGG 1020
consensus_6210#1 CACCCGATCCACGAGATCGTGGAGGCGCGGCTGTTCCCGTCGGCGGGCGGGTGGGCGCGG 214
********************* **** *************** *** *************
consensus_6210#0 AAGCGCGCGNCGGTGCAGGCGACCCGCGTGGCGGTGGTGGGCGCGGTGACGGCGGTGGCG 1080
consensus_6210#1 AAGCGCGCGGCGGTGCAGGCGAGCCGCGTGGCGGTGGTGGGCGCGGTGACGGCGGTGGCG 274
********* ************ *************************************
consensus_6210#0 TGCTTCGTGCCGGCGTTCGGGGAGTTCGCGGCGTTCGTGGGGAGCACGGTGTGTGCGCTG 1140
consensus_6210#1 TGCTTCGTGCCGGCGTTCGGGGAGTTCGCGGCGTTCGTGGGGAGCACGGTGTGTGCGCTG 334
************************************************************
consensus_6210#0 CTCTCCTTCGTGCTCCCGGCGCTGTTCCACCTCCGCCTCGTCGGAGCGGCGGCGAGCGCG 1200
consensus_6210#1 CTCTCCTTCGTGCTCCCGGCGCTGTTCCACCTCCGCCTCGTCGGAGCGGCGGCGAGCGCG 394
************************************************************
consensus_6210#0 TGGCGGCGCGCGGTGGACGGCGGCTTCTTGCTCCTTGGGCTGGCCTTCGCGGCCCATGGG 1260
consensus_6210#1 TGGCGGCGCGCGGTGGACGGCGGCTTCTTGCTCCTTGGGCTGGCCTTCGCGGCCCATGGG 454
************************************************************
consensus_6210#0 CTTTACACGGTTGTCTCGGGCCTCTGAACTGGGCCGTAATGGGCTCTCCTCGCCGTCCAA 1320
consensus_6210#1 CTTTACACGGTTGTCTCGGGCCTCTGAACTGGGCCGTAATGGGCTCTCCTCGCCGTCCAA 514
************************************************************
consensus_6210#0 TCCCAATCCAGCAGCTTCTCTCTTCCAGTATATATTTTTCCAGACATTTTTCAAGACGTG 1380
consensus_6210#1 TCCCAATCCAGCAGCTTCTCTCTTCCAGTATATATTTTTCCAGACATTTTTCAAGACGTG 574
************************************************************
consensus_6210#0 TATAATGTACTACACTAGATTAGCATACTAGAATTTTTTTTTTCTTCCAATAATGTAAAA 1440
consensus_6210#1 TATAATGTACTACACTAGATTAGCATACTAGAATTTTTTTTTTCTTCCAATAATGTAAAA 634
************************************************************
consensus_6210#0 GCGTTACATTTGCAGCTAATTTTGCATGTAGGAACACAATTTCCTTATACTTTTTA--- 1496
consensus_6210#1 GCGTTACATTTGCAGATGATTTTGCATGTAGGAACACAATTTCCTTATAAAAAAAAAGG 693
*************** * ******************************* *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||