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Oryza sativa
cluster # 6213 cluster # 6213       Sequences # 4       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6213#0 length = 2534 sequences # 1  
consensus_6213#1 length = 685 sequences # 1  
consensus_6213#2 length = 503 sequences # 1  
consensus_6213#3 length = 477 sequences # 1  

consensusID : consensus_6213#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 2534
fasta sequence
                              [ACGAGCCTCTGTCTTGGTTTGCACCTGCAAATGGACCGACGACGACGACCACGGACGCCTCTTCTGACCGCACTGTTGCTCGTCTCGCTGGCTGCGGCGGCGGCGGCGAGCGGCGCGCCCTGCTCCGGTCTATCAAGCCGCTCTTCGTCGGCGGCGAGTTCGGCTACGGCGATGCCTGGAACGAGAGCACCGACTGCTGCGGCTGGGAAGGCGTGGTCTGCGGCGGCGGCGGCGGCGGCCACCACGTGGTGTCGCTGTCTCTGGTCCAGGCCGGCATCGCCGGCGCCGTCGACGGCGCGGCGTTCGCGGCGTTCACGGCGCTGCAGGAGCTGGACCTGTCGTGGAATCGAATCTCTGCCTTCTCTCTTCCATCTGCAGGAGGTGAGCGTGCATTTCAGAAGCTTAGCAAGCTCTCGCTTTCGCACAACAGTCTAACAAATGAAGGCGTTGCTGCTCTAGTTATCAACCGAACTACACTTTCAGAGCTGTACCTTGGCGGAAACCAGTTACTTACAACAAGTTGGATATCCAATTTGACGTCTCTTAGGGTGGTTGATTTATCCCAGAACTTCTTACACGGATACAACGGTATATGTAACCTCCATCAACTAGAGTACCTACACCTTGGTGTCAACATGCTACATGGAACCATAAATTCATGCTTGGGAAAACTACAACAATTGAAGTACCTGAACATGGAAAGAAACTTTCTCATGGGGGAGATTGCACCGAACTTACTTATCAACTTGACCAAACTGGAGACTATACACCTGGGGGTGAACAATCTTACCGGCACATTCATGCTCTCCTGGCTAGCAAACAGCTCAAACCTCGTTGATGTTGTCCTCTCACACAACTACAATCTGAAAATCGAAACCGAGCTTGTGAGATGGACACCGTTGTTCCAGCTGGTATACTTGAATTTAAGCAACTGTGTTATCAATAGGCGAAGCAATGGAGTTGTGCCGACTTTTCTGTCAACCCAGCTTAGCCTATCCGGGATCGATCTCTCGCATTGTTCGCTCCAAGGCAGGATTCCACCCTGGCTGTTCTACAATCTATCTGATTTTGTCTTGCTCAATGGCAATAGAATGGATGTCATTGATATGGATGGGCTTGGTGGTAACATACCTCACCGGTGCAGGTGCTTGATTTGTCAGAGAACAAAATATCGATGTCGATCCCGACCAACTTTGGAAGCATTTTTCAGTTTTTGGACTACTGTGACATGTCCTCCAACAGGTTGTACGGTGGGATTCCATCATTGGCAGAGGCAACATCATTGGAGGTGCTTGACTTGTCATCTAACAACCTCAATGAGGAAATATTGCCAACATTAATAGGGAATTTGTCAATTCTAACATCTCTTCTACTCTCCAATAATGACCTGACAGGGCCTATGCCACCTTTCCATTGGAATTTGGGTAGTTTGAAGCACCTCAGCCTTGAGAACAACCGATTCTCGGGATGGCTATCTCCATTGCTGTCGAACAGCAGTAATCTCAAGACACTCAATGTGAGAAACAACCATCTATCAGGAATCATCCCGGATGGCCTCCTGAGCTTCCAACAGCTTGGTGTGATCCTCCTTGGAGGGAATGATTTTCATGGTCCAATACCATTGGACCTTTGCTTCAACAACTATCTCCACTTTGTTGATCTCTCCAACAATCAATTCTCTGGGGAGATACCAAATTGCTTCTACAATGATTTCTGGACAGATTTGCCAATGTACTTCAACGATGACCCATTCTCAGGCAATATCACAGAGCGCATGTCTGTCGACTTCACGACGAAAGGCGAGAACCTTACCTACATGGGAGAGCCTCTAGTGCTCATGACGGGCATTGATCTGTCCATGAATCAATTGTCAGGCGCCATCCCTCCGCCATTAGGTTTCCTGAGGCAGCTCAAGTCTCTAAACTTATCACATAACCAACTTGTTGGCCCGATACCAGAGACATTCATGTATATGCAGGATATGGAGAGCCTTGACCTCTCATACAACCACCTCAATGGCAGCCTGCCTATGCAGCTGGCAAATCTCTCCTTCCTGTGCTCGTTCAATGTCGCCTACAACAACCTCTCTGGTGAGATACCCTTCCAACAACAGCTTGGGACATTCGATGAATCGGCATTCGAGGGGAATGACAATCTCTGTGGTGGAATCATCAACAAAAACTGCTCATCAGTGCTGCATCAGAATCAAGGAGTGTTCGACGCCATTGACACGTCACTTGTTTTCTGGTCCTACGTTTTTGGGTGTTTTGCACTTGGATTTTGGGGCACCGTGGCATTGCTGATATGGGATGAAGTGTGCAGGAGGAGACTGTGTGACTTGATGGATGCTCTAATGTTTAAGCTGGGTTGGGAATTTGTGCCTTGAATCCTGATATGTCTAGCTAAGAGTCTAGGAGACATGGAAAGACAGAGCAATCCCTTCTTTTTTTTTGCACGAGATGCACATGCTGTCACATCCTGATTTTCGTTTCAGGATTTATAAATTATTTAATAAATTAATAATAGAATTTATA]

[+] EMBL AK067558             [ACGAGCCTCTGTCTTGGTTTGCACCTGCAAATGGACCGACGACGACGACCACGGACGCCTCTTCTGACCGCACTGTTGCTCGTCTCGCTGGCTGCGGCGGCGGCGGCGAGCGGCGCGCCCTGCTCCGGTCTATCAAGCCGCTCTTCGTCGGCGGCGAGTTCGGCTACGGCGATGCCTGGAACGAGAGCACCGACTGCTGCGGCTGGGAAGGCGTGGTCTGCGGCGGCGGCGGCGGCGGCCACCACGTGGTGTCGCTGTCTCTGGTCCAGGCCGGCATCGCCGGCGCCGTCGACGGCGCGGCGTTCGCGGCGTTCACGGCGCTGCAGGAGCTGGACCTGTCGTGGAATCGAATCTCTGCCTTCTCTCTTCCATCTGCAGGAGGTGAGCGTGCATTTCAGAAGCTTAGCAAGCTCTCGCTTTCGCACAACAGTCTAACAAATGAAGGCGTTGCTGCTCTAGTTATCAACCGAACTACACTTTCAGAGCTGTACCTTGGCGGAAACCAGTTACTTACAACAAGTTGGATATCCAATTTGACGTCTCTTAGGGTGGTTGATTTATCCCAGAACTTCTTACACGGATACAACGGTATATGTAACCTCCATCAACTAGAGTACCTACACCTTGGTGTCAACATGCTACATGGAACCATAAATTCATGCTTGGGAAAACTACAACAATTGAAGTACCTGAACATGGAAAGAAACTTTCTCATGGGGGAGATTGCACCGAACTTACTTATCAACTTGACCAAACTGGAGACTATACACCTGGGGGTGAACAATCTTACCGGCACATTCATGCTCTCCTGGCTAGCAAACAGCTCAAACCTCGTTGATGTTGTCCTCTCACACAACTACAATCTGAAAATCGAAACCGAGCTTGTGAGATGGACACCGTTGTTCCAGCTGGTATACTTGAATTTAAGCAACTGTGTTATCAATAGGCGAAGCAATGGAGTTGTGCCGACTTTTCTGTCAACCCAGCTTAGCCTATCCGGGATCGATCTCTCGCATTGTTCGCTCCAAGGCAGGATTCCACCCTGGCTGTTCTACAATCTATCTGATTTTGTCTTGCTCAATGGCAATAGAATGGATGTCATTGATATGGATGGGCTTGGTGGTAACATACCTCACCGGTGCAGGTGCTTGATTTGTCAGAGAACAAAATATCGATGTCGATCCCGACCAACTTTGGAAGCATTTTTCAGTTTTTGGACTACTGTGACATGTCCTCCAACAGGTTGTACGGTGGGATTCCATCATTGGCAGAGGCAACATCATTGGAGGTGCTTGACTTGTCATCTAACAACCTCAATGAGGAAATATTGCCAACATTAATAGGGAATTTGTCAATTCTAACATCTCTTCTACTCTCCAATAATGACCTGACAGGGCCTATGCCACCTTTCCATTGGAATTTGGGTAGTTTGAAGCACCTCAGCCTTGAGAACAACCGATTCTCGGGATGGCTATCTCCATTGCTGTCGAACAGCAGTAATCTCAAGACACTCAATGTGAGAAACAACCATCTATCAGGAATCATCCCGGATGGCCTCCTGAGCTTCCAACAGCTTGGTGTGATCCTCCTTGGAGGGAATGATTTTCATGGTCCAATACCATTGGACCTTTGCTTCAACAACTATCTCCACTTTGTTGATCTCTCCAACAATCAATTCTCTGGGGAGATACCAAATTGCTTCTACAATGATTTCTGGACAGATTTGCCAATGTACTTCAACGATGACCCATTCTCAGGCAATATCACAGAGCGCATGTCTGTCGACTTCACGACGAAAGGCGAGAACCTTACCTACATGGGAGAGCCTCTAGTGCTCATGACGGGCATTGATCTGTCCATGAATCAATTGTCAGGCGCCATCCCTCCGCCATTAGGTTTCCTGAGGCAGCTCAAGTCTCTAAACTTATCACATAACCAACTTGTTGGCCCGATACCAGAGACATTCATGTATATGCAGGATATGGAGAGCCTTGACCTCTCATACAACCACCTCAATGGCAGCCTGCCTATGCAGCTGGCAAATCTCTCCTTCCTGTGCTCGTTCAATGTCGCCTACAACAACCTCTCTGGTGAGATACCCTTCCAACAACAGCTTGGGACATTCGATGAATCGGCATTCGAGGGGAATGACAATCTCTGTGGTGGAATCATCAACAAAAACTGCTCATCAGTGCTGCATCAGAATCAAGGAGTGTTCGACGCCATTGACACGTCACTTGTTTTCTGGTCCTACGTTTTTGGGTGTTTTGCACTTGGATTTTGGGGCACCGTGGCATTGCTGATATGGGATGAAGTGTGCAGGAGGAGACTGTGTGACTTGATGGATGCTCTAATGTTTAAGCTGGGTTGGGAATTTGTGCCTTGAATCCTGATATGTCTAGCTAAGAGTCTAGGAGACATGGAAAGACAGAGCAATCCCTTCTTTTTTTTTGCACGAGATGCACATGCTGTCACATCCTGATTTTCGTTTCAGGATTTATAAATTATTTAATAAATTAATAATAGAATTTATA]


>consensus_6213#0 ACGAGCCTCTGTCTTGGTTTGCACCTGCAAATGGACCGACGACGACGACCACGGACGCCT CTTCTGACCGCACTGTTGCTCGTCTCGCTGGCTGCGGCGGCGGCGGCGAGCGGCGCGCCC TGCTCCGGTCTATCAAGCCGCTCTTCGTCGGCGGCGAGTTCGGCTACGGCGATGCCTGGA ACGAGAGCACCGACTGCTGCGGCTGGGAAGGCGTGGTCTGCGGCGGCGGCGGCGGCGGCC ACCACGTGGTGTCGCTGTCTCTGGTCCAGGCCGGCATCGCCGGCGCCGTCGACGGCGCGG CGTTCGCGGCGTTCACGGCGCTGCAGGAGCTGGACCTGTCGTGGAATCGAATCTCTGCCT TCTCTCTTCCATCTGCAGGAGGTGAGCGTGCATTTCAGAAGCTTAGCAAGCTCTCGCTTT CGCACAACAGTCTAACAAATGAAGGCGTTGCTGCTCTAGTTATCAACCGAACTACACTTT CAGAGCTGTACCTTGGCGGAAACCAGTTACTTACAACAAGTTGGATATCCAATTTGACGT CTCTTAGGGTGGTTGATTTATCCCAGAACTTCTTACACGGATACAACGGTATATGTAACC TCCATCAACTAGAGTACCTACACCTTGGTGTCAACATGCTACATGGAACCATAAATTCAT GCTTGGGAAAACTACAACAATTGAAGTACCTGAACATGGAAAGAAACTTTCTCATGGGGG AGATTGCACCGAACTTACTTATCAACTTGACCAAACTGGAGACTATACACCTGGGGGTGA ACAATCTTACCGGCACATTCATGCTCTCCTGGCTAGCAAACAGCTCAAACCTCGTTGATG TTGTCCTCTCACACAACTACAATCTGAAAATCGAAACCGAGCTTGTGAGATGGACACCGT TGTTCCAGCTGGTATACTTGAATTTAAGCAACTGTGTTATCAATAGGCGAAGCAATGGAG TTGTGCCGACTTTTCTGTCAACCCAGCTTAGCCTATCCGGGATCGATCTCTCGCATTGTT CGCTCCAAGGCAGGATTCCACCCTGGCTGTTCTACAATCTATCTGATTTTGTCTTGCTCA ATGGCAATAGAATGGATGTCATTGATATGGATGGGCTTGGTGGTAACATACCTCACCGGT GCAGGTGCTTGATTTGTCAGAGAACAAAATATCGATGTCGATCCCGACCAACTTTGGAAG CATTTTTCAGTTTTTGGACTACTGTGACATGTCCTCCAACAGGTTGTACGGTGGGATTCC ATCATTGGCAGAGGCAACATCATTGGAGGTGCTTGACTTGTCATCTAACAACCTCAATGA GGAAATATTGCCAACATTAATAGGGAATTTGTCAATTCTAACATCTCTTCTACTCTCCAA TAATGACCTGACAGGGCCTATGCCACCTTTCCATTGGAATTTGGGTAGTTTGAAGCACCT CAGCCTTGAGAACAACCGATTCTCGGGATGGCTATCTCCATTGCTGTCGAACAGCAGTAA TCTCAAGACACTCAATGTGAGAAACAACCATCTATCAGGAATCATCCCGGATGGCCTCCT GAGCTTCCAACAGCTTGGTGTGATCCTCCTTGGAGGGAATGATTTTCATGGTCCAATACC ATTGGACCTTTGCTTCAACAACTATCTCCACTTTGTTGATCTCTCCAACAATCAATTCTC TGGGGAGATACCAAATTGCTTCTACAATGATTTCTGGACAGATTTGCCAATGTACTTCAA CGATGACCCATTCTCAGGCAATATCACAGAGCGCATGTCTGTCGACTTCACGACGAAAGG CGAGAACCTTACCTACATGGGAGAGCCTCTAGTGCTCATGACGGGCATTGATCTGTCCAT GAATCAATTGTCAGGCGCCATCCCTCCGCCATTAGGTTTCCTGAGGCAGCTCAAGTCTCT AAACTTATCACATAACCAACTTGTTGGCCCGATACCAGAGACATTCATGTATATGCAGGA TATGGAGAGCCTTGACCTCTCATACAACCACCTCAATGGCAGCCTGCCTATGCAGCTGGC AAATCTCTCCTTCCTGTGCTCGTTCAATGTCGCCTACAACAACCTCTCTGGTGAGATACC CTTCCAACAACAGCTTGGGACATTCGATGAATCGGCATTCGAGGGGAATGACAATCTCTG TGGTGGAATCATCAACAAAAACTGCTCATCAGTGCTGCATCAGAATCAAGGAGTGTTCGA CGCCATTGACACGTCACTTGTTTTCTGGTCCTACGTTTTTGGGTGTTTTGCACTTGGATT TTGGGGCACCGTGGCATTGCTGATATGGGATGAAGTGTGCAGGAGGAGACTGTGTGACTT GATGGATGCTCTAATGTTTAAGCTGGGTTGGGAATTTGTGCCTTGAATCCTGATATGTCT AGCTAAGAGTCTAGGAGACATGGAAAGACAGAGCAATCCCTTCTTTTTTTTTGCACGAGA TGCACATGCTGTCACATCCTGATTTTCGTTTCAGGATTTATAAATTATTTAATAAATTAA TAATAGAATTTATA



consensusID : consensus_6213#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 685
fasta sequence
                              [TTTTTTTTTTTTTTTTTAAATTCTAATAATAATTTATTAAATAATTTATAAATCCGGAAACGAAAATCAGGGTGTGACAAATCTACCCCCCTTACAAAGAATCTCGTCCCGAGATTCGGAACGGCTAGAAAGAAAAAGGCATAGGTAAACTGCAGTCTATCTTATTCCATAACTCCGATAATTATTCTAAGGCTTTAAAGAAAACTACTGCTTCTTTGAAACTGGGGGCTGAGCTGTAACACTTGAAGACACAACCGGCACTGCATTGGCTCCTGTGAGGACAATGTTGTTGACTTGGCCTTGGGGCTGTTGACGCTTCGGCTTCGGACACTCTTTTACGAAGGGACCTGGCTCATAACAATTGAAACACACCCGCTGCTCCCTTCCATTACTGGTATCTTCTTGAGATTGATCCTGCTGAACTGGCACCGACTGATTAGCTTGCTCGATATTAACTTCATTGCTTTCATTAGCCTCTGATTTGATCTCACCAGCGATGCTCAACTGTTGCGACTGTTCTTGACCAGCGGAAGAAGATTCACCAATTTGGAGGGACTTAATACGCTGGGTTTGGGTACTACCTTGTGGCTCCTAGAAAGACATCCTTCCTGTCTTACGAGTGTCCGCTCCTGTTTTGCTTGGCCTCCAGGCGGAATGGCTTTGGCAACCAACTTCCGGAAGATCC]

[+] EMBL CA759167             [TTTTTTTTTTTTTTTTTAAATTCTAATAATAATTTATTAAATAATTTATAAATCCGGAAACGAAAATCAGGGTGTGACAAATCTACCCCCCTTACAAAGAATCTCGTCCCGAGATTCGGAACGGCTAGAAAGAAAAAGGCATAGGTAAACTGCAGTCTATCTTATTCCATAACTCCGATAATTATTCTAAGGCTTTAAAGAAAACTACTGCTTCTTTGAAACTGGGGGCTGAGCTGTAACACTTGAAGACACAACCGGCACTGCATTGGCTCCTGTGAGGACAATGTTGTTGACTTGGCCTTGGGGCTGTTGACGCTTCGGCTTCGGACACTCTTTTACGAAGGGACCTGGCTCATAACAATTGAAACACACCCGCTGCTCCCTTCCATTACTGGTATCTTCTTGAGATTGATCCTGCTGAACTGGCACCGACTGATTAGCTTGCTCGATATTAACTTCATTGCTTTCATTAGCCTCTGATTTGATCTCACCAGCGATGCTCAACTGTTGCGACTGTTCTTGACCAGCGGAAGAAGATTCACCAATTTGGAGGGACTTAATACGCTGGGTTTGGGTACTACCTTGTGGCTCCTAGAAAGACATCCTTCCTGTCTTACGAGTGTCCGCTCCTGTTTTGCTTGGCCTCCAGGCGGAATGGCTTTGGCAACCAACTTCCGGAAGATCC]


>consensus_6213#1 TTTTTTTTTTTTTTTTTAAATTCTAATAATAATTTATTAAATAATTTATAAATCCGGAAA CGAAAATCAGGGTGTGACAAATCTACCCCCCTTACAAAGAATCTCGTCCCGAGATTCGGA ACGGCTAGAAAGAAAAAGGCATAGGTAAACTGCAGTCTATCTTATTCCATAACTCCGATA ATTATTCTAAGGCTTTAAAGAAAACTACTGCTTCTTTGAAACTGGGGGCTGAGCTGTAAC ACTTGAAGACACAACCGGCACTGCATTGGCTCCTGTGAGGACAATGTTGTTGACTTGGCC TTGGGGCTGTTGACGCTTCGGCTTCGGACACTCTTTTACGAAGGGACCTGGCTCATAACA ATTGAAACACACCCGCTGCTCCCTTCCATTACTGGTATCTTCTTGAGATTGATCCTGCTG AACTGGCACCGACTGATTAGCTTGCTCGATATTAACTTCATTGCTTTCATTAGCCTCTGA TTTGATCTCACCAGCGATGCTCAACTGTTGCGACTGTTCTTGACCAGCGGAAGAAGATTC ACCAATTTGGAGGGACTTAATACGCTGGGTTTGGGTACTACCTTGTGGCTCCTAGAAAGA CATCCTTCCTGTCTTACGAGTGTCCGCTCCTGTTTTGCTTGGCCTCCAGGCGGAATGGCT TTGGCAACCAACTTCCGGAAGATCC



consensusID : consensus_6213#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 503
fasta sequence
                              [AAGGGGAGTCCAGCAACTCCCAAAACAAGAAAAAGAAACCCAACACTCCTTCCACTCAGGCTTCTAATGGTGCCCATAAGGGCAAAGCTCAGGTTCCAGCAGGACAAAATTCTGCTGGTAAGTTCCTTTGCAAGTTTTGCAAGGCAGAAGGTCATGCACAGAGGGACTGTGAAGGCTTTCGGGCTTGGCTTGCTAAGAAAGGGATTCCTTTCCATGAGGACGCTAAGAAAGGGGGAGCGGATCCTAAGAGTGGCTGATGGAGCTGAAATTAAAGTGATGGCCGTTGGGGAGCTTCATCTTCGACTTCCAAGCGGCAATAATCTTTTACTTCATGATGTTCTTTATGCTCCCTCTGTTAAGAGGAACCTTATTTCTGTAATGGTTTTAACGAACAGTGGTTATGTGTCACACCCTGATTTTCGTGTTAGGATTTATAAATTATTTAATAAATTATTAATAGAATTTATATGAAATGTTCATTAATTTACAAGTGAAGTTAAAAA]

[+] EMBL AU085919             [AAGGGGAGTCCAGCAACTCCCAAAACAAGAAAAAGAAACCCAACACTCCTTCCACTCAGGCTTCTAATGGTGCCCATAAGGGCAAAGCTCAGGTTCCAGCAGGACAAAATTCTGCTGGTAAGTTCCTTTGCAAGTTTTGCAAGGCAGAAGGTCATGCACAGAGGGACTGTGAAGGCTTTCGGGCTTGGCTTGCTAAGAAAGGGATTCCTTTCCATGAGGACGCTAAGAAAGGGGGAGCGGATCCTAAGAGTGGCTGATGGAGCTGAAATTAAAGTGATGGCCGTTGGGGAGCTTCATCTTCGACTTCCAAGCGGCAATAATCTTTTACTTCATGATGTTCTTTATGCTCCCTCTGTTAAGAGGAACCTTATTTCTGTAATGGTTTTAACGAACAGTGGTTATGTGTCACACCCTGATTTTCGTGTTAGGATTTATAAATTATTTAATAAATTATTAATAGAATTTATATGAAATGTTCATTAATTTACAAGTGAAGTTAAAAA]


>consensus_6213#2 AAGGGGAGTCCAGCAACTCCCAAAACAAGAAAAAGAAACCCAACACTCCTTCCACTCAGG CTTCTAATGGTGCCCATAAGGGCAAAGCTCAGGTTCCAGCAGGACAAAATTCTGCTGGTA AGTTCCTTTGCAAGTTTTGCAAGGCAGAAGGTCATGCACAGAGGGACTGTGAAGGCTTTC GGGCTTGGCTTGCTAAGAAAGGGATTCCTTTCCATGAGGACGCTAAGAAAGGGGGAGCGG ATCCTAAGAGTGGCTGATGGAGCTGAAATTAAAGTGATGGCCGTTGGGGAGCTTCATCTT CGACTTCCAAGCGGCAATAATCTTTTACTTCATGATGTTCTTTATGCTCCCTCTGTTAAG AGGAACCTTATTTCTGTAATGGTTTTAACGAACAGTGGTTATGTGTCACACCCTGATTTT CGTGTTAGGATTTATAAATTATTTAATAAATTATTAATAGAATTTATATGAAATGTTCAT TAATTTACAAGTGAAGTTAAAAA



consensusID : consensus_6213#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 477
fasta sequence
                              [TTTTTTTAAATTCTAATAATAATTTATTAAATAATTTATAAATCCTGAAACGAAAATCAGGATGTGACAACCGGGCAGAATCCGCTAAGGCCACAGGCAGATAATTCGACATGGCTTTGCTGTCTCCTCCTGCTGCGCGGATTGCGAGACCATAGACGGTGAGCCAAGACTCAGGGTTGGTGGTGCCGTCATACTTCTCGATTCCAGTCGGCTTAAAGCCGGCTGGCCAATCCACTCGATGCAGATCATTTGTGAAGGCAGCAACTCCGTCCATATCGTCGTCGTAGCGATCTGGTGAATGATGGGNGAGTATGGCCTCTTGCTGCGCGGCGCTGGTTGATGGTGTCGCGAAGATCGACGGGGCGCCTTCGATGTGGGGAGTGTGNGGTCGTTCAACTCGACGCTCCCTATGTCGTTCGGGAGGCGAGCGGACAGATCGCTCACCATGTCCCCTGCTCCTGCGACTAGGTCCGGCAC]

[+] EMBL CF315740             [TTTTTTTAAATTCTAATAATAATTTATTAAATAATTTATAAATCCTGAAACGAAAATCAGGATGTGACAACCGGGCAGAATCCGCTAAGGCCACAGGCAGATAATTCGACATGGCTTTGCTGTCTCCTCCTGCTGCGCGGATTGCGAGACCATAGACGGTGAGCCAAGACTCAGGGTTGGTGGTGCCGTCATACTTCTCGATTCCAGTCGGCTTAAAGCCGGCTGGCCAATCCACTCGATGCAGATCATTTGTGAAGGCAGCAACTCCGTCCATATCGTCGTCGTAGCGATCTGGTGAATGATGGGNGAGTATGGCCTCTTGCTGCGCGGCGCTGGTTGATGGTGTCGCGAAGATCGACGGGGCGCCTTCGATGTGGGGAGTGTGNGGTCGTTCAACTCGACGCTCCCTATGTCGTTCGGGAGGCGAGCGGACAGATCGCTCACCATGTCCCCTGCTCCTGCGACTAGGTCCGGCAC]


>consensus_6213#3 TTTTTTTAAATTCTAATAATAATTTATTAAATAATTTATAAATCCTGAAACGAAAATCAG GATGTGACAACCGGGCAGAATCCGCTAAGGCCACAGGCAGATAATTCGACATGGCTTTGC TGTCTCCTCCTGCTGCGCGGATTGCGAGACCATAGACGGTGAGCCAAGACTCAGGGTTGG TGGTGCCGTCATACTTCTCGATTCCAGTCGGCTTAAAGCCGGCTGGCCAATCCACTCGAT GCAGATCATTTGTGAAGGCAGCAACTCCGTCCATATCGTCGTCGTAGCGATCTGGTGAAT GATGGGNGAGTATGGCCTCTTGCTGCGCGGCGCTGGTTGATGGTGTCGCGAAGATCGACG GGGCGCCTTCGATGTGGGGAGTGTGNGGTCGTTCAACTCGACGCTCCCTATGTCGTTCGG GAGGCGAGCGGACAGATCGCTCACCATGTCCCCTGCTCCTGCGACTAGGTCCGGCAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6213#1      ------------------------------------------------------------
consensus_6213#3      ------------------------------------------------------------
consensus_6213#2      ------------------------------------------------------------
consensus_6213#0      ACGAGCCTCTGTCTTGGTTTGCACCTGCAAATGGACCGACGACGACGACCACGGACGCCT 60
                                                                                  

consensus_6213#1      ------------------------------------------------------------
consensus_6213#3      ------------------------------------------------------------
consensus_6213#2      ------------------------------------------------------------
consensus_6213#0      CTTCTGACCGCACTGTTGCTCGTCTCGCTGGCTGCGGCGGCGGCGGCGAGCGGCGCGCCC 120
                                                                                  

consensus_6213#1      ------------------------------------------------------------
consensus_6213#3      ------------------------------------------------------------
consensus_6213#2      ------------------------------------------------------------
consensus_6213#0      TGCTCCGGTCTATCAAGCCGCTCTTCGTCGGCGGCGAGTTCGGCTACGGCGATGCCTGGA 180
                                                                                  

consensus_6213#1      ------------------------------------------------------------
consensus_6213#3      ------------------------------------------------------------
consensus_6213#2      ------------------------------------------------------------
consensus_6213#0      ACGAGAGCACCGACTGCTGCGGCTGGGAAGGCGTGGTCTGCGGCGGCGGCGGCGGCGGCC 240
                                                                                  

consensus_6213#1      ------------------------------------------------------------
consensus_6213#3      ------------------------------------------------------------
consensus_6213#2      ------------------------------------------------------------
consensus_6213#0      ACCACGTGGTGTCGCTGTCTCTGGTCCAGGCCGGCATCGCCGGCGCCGTCGACGGCGCGG 300
                                                                                  

consensus_6213#1      ------------------------------------------------------------
consensus_6213#3      ------------------------------------------------------------
consensus_6213#2      ------------------------------------------------------------
consensus_6213#0      CGTTCGCGGCGTTCACGGCGCTGCAGGAGCTGGACCTGTCGTGGAATCGAATCTCTGCCT 360
                                                                                  

consensus_6213#1      ------------------------------------------------------------
consensus_6213#3      ------------------------------------------------------------
consensus_6213#2      ------------------------------------------------------------
consensus_6213#0      TCTCTCTTCCATCTGCAGGAGGTGAGCGTGCATTTCAGAAGCTTAGCAAGCTCTCGCTTT 420
                                                                                  

consensus_6213#1      ------------------------------------------------------------
consensus_6213#3      ------------------------------------------------------------
consensus_6213#2      ------------------------------------------------------------
consensus_6213#0      CGCACAACAGTCTAACAAATGAAGGCGTTGCTGCTCTAGTTATCAACCGAACTACACTTT 480
                                                                                  

consensus_6213#1      ------------------------------------------------------------
consensus_6213#3      ------------------------------------------------------------
consensus_6213#2      ------------------------------------------------------------
consensus_6213#0      CAGAGCTGTACCTTGGCGGAAACCAGTTACTTACAACAAGTTGGATATCCAATTTGACGT 540
                                                                                  

consensus_6213#1      ------------------------------------------------------------
consensus_6213#3      ------------------------------------------------------------
consensus_6213#2      ------------------------------------------------------------
consensus_6213#0      CTCTTAGGGTGGTTGATTTATCCCAGAACTTCTTACACGGATACAACGGTATATGTAACC 600
                                                                                  

consensus_6213#1      ------------------------------------------------------------
consensus_6213#3      ------------------------------------------------------------
consensus_6213#2      ------------------------------------------------------------
consensus_6213#0      TCCATCAACTAGAGTACCTACACCTTGGTGTCAACATGCTACATGGAACCATAAATTCAT 660
                                                                                  

consensus_6213#1      ------------------------------------------------------------
consensus_6213#3      ------------------------------------------------------------
consensus_6213#2      ------------------------------------------------------------
consensus_6213#0      GCTTGGGAAAACTACAACAATTGAAGTACCTGAACATGGAAAGAAACTTTCTCATGGGGG 720
                                                                                  

consensus_6213#1      ------------------------------------------------------------
consensus_6213#3      ------------------------------------------------------------
consensus_6213#2      ------------------------------------------------------------
consensus_6213#0      AGATTGCACCGAACTTACTTATCAACTTGACCAAACTGGAGACTATACACCTGGGGGTGA 780
                                                                                  

consensus_6213#1      ------------------------------------------------------------
consensus_6213#3      ------------------------------------------------------------
consensus_6213#2      ------------------------------------------------------------
consensus_6213#0      ACAATCTTACCGGCACATTCATGCTCTCCTGGCTAGCAAACAGCTCAAACCTCGTTGATG 840
                                                                                  

consensus_6213#1      ------------------------------------------------------------
consensus_6213#3      ------------------------------------------------------------
consensus_6213#2      ------------------------------------------------------------
consensus_6213#0      TTGTCCTCTCACACAACTACAATCTGAAAATCGAAACCGAGCTTGTGAGATGGACACCGT 900
                                                                                  

consensus_6213#1      ------------------------------------------------------------
consensus_6213#3      ------------------------------------------------------------
consensus_6213#2      ------------------------------------------------------------
consensus_6213#0      TGTTCCAGCTGGTATACTTGAATTTAAGCAACTGTGTTATCAATAGGCGAAGCAATGGAG 960
                                                                                  

consensus_6213#1      ------------------------------------------------------------
consensus_6213#3      ------------------------------------------------------------
consensus_6213#2      ------------------------------------------------------------
consensus_6213#0      TTGTGCCGACTTTTCTGTCAACCCAGCTTAGCCTATCCGGGATCGATCTCTCGCATTGTT 1020
                                                                                  

consensus_6213#1      ------------------------------------------------------------
consensus_6213#3      ------------------------------------------------------------
consensus_6213#2      ------------------------------------------------------------
consensus_6213#0      CGCTCCAAGGCAGGATTCCACCCTGGCTGTTCTACAATCTATCTGATTTTGTCTTGCTCA 1080
                                                                                  

consensus_6213#1      ------------------------------------------------------------
consensus_6213#3      ------------------------------------------------------------
consensus_6213#2      ------------------------------------------------------------
consensus_6213#0      ATGGCAATAGAATGGATGTCATTGATATGGATGGGCTTGGTGGTAACATACCTCACCGGT 1140
                                                                                  

consensus_6213#1      ------------------------------------------------------------
consensus_6213#3      ------------------------------------------------------------
consensus_6213#2      ------------------------------------------------------------
consensus_6213#0      GCAGGTGCTTGATTTGTCAGAGAACAAAATATCGATGTCGATCCCGACCAACTTTGGAAG 1200
                                                                                  

consensus_6213#1      ------------------------------------------------------------
consensus_6213#3      ------------------------------------------------------------
consensus_6213#2      ------------------------------------------------------------
consensus_6213#0      CATTTTTCAGTTTTTGGACTACTGTGACATGTCCTCCAACAGGTTGTACGGTGGGATTCC 1260
                                                                                  

consensus_6213#1      ----------------------TTTTTTTTTTTTTTTTTAAATTCTAATAATAATTTATT 38
consensus_6213#3      --------------------------------TTTTTTTAAATTCTAATAATAATTTATT 28
consensus_6213#2      ---------------------------------------------------------AAG 3
consensus_6213#0      ATCATTGGCAGAGGCAACATCATTGGAGGTGCTTGACTTGTCATCTAACAACCTCAATGA 1320
                                                                                  

consensus_6213#1      AAATAATTTATAAATCCGGAAACGAAAATCAG-GG-TGTGACAAATCTACCCCCCTTACA 96
consensus_6213#3      AAATAATTTATAAATCCTGAAACGAAAATCAG-GA-TGTGACAACCGGGC---------- 76
consensus_6213#2      GGGAGTCCAGCAACTCCCAAAACAAGAAAAAG-AAACCCAACACTCCTTCCACTCAGGCT 62
consensus_6213#0      GGAAATATTGCCAACATTAATAGGGAATTTGTCAATTCTAACATCTCTTCTACTCT--CC 1378
                                  *      * *    *             ***      *          

consensus_6213#1      AAGAATCTCGTCC-CGAGATTC--GGAACGGCTAGAAAG-AAAAAGGCATAGGTAAACTG 152
consensus_6213#3      -AGAATC---CGC-TAAGGCC------ACAGGCAGATA---ATTCGACATGGCTTTGCTG 122
consensus_6213#2      TCTAATGGTGCCCATAAGGGC-----AAAGCTCAGGTTCCAGCAGGACAAAATTCTGCTG 117
consensus_6213#0      AATAATGAC-CTGACAGGGCCTATGCCACCTTTCCATTGGAATTTGGGTAGTTTGAAGCA 1437
                         ***           *         *                 *       *      

consensus_6213#1      CAGTCTATCTTA-----TTCCATAACTCCGATAATTATTC-TAAGGCTTTAAAGAAAACT 206
consensus_6213#3      -------TCTCC-----TCCTGCTGCGCGGATTGCGAGAC-CATAG----ACGGTGAGCC 165
consensus_6213#2      GTAAGTTCCTTTGCAAGTTTTGCAAGGCAGAAGGTCATGCACAGAGGGACTGTGAAGGCT 177
consensus_6213#0      CCTCAGCCTTGAGAACAACCGATTCTCGGGATGGCTATCTCCATTGCTGTCGAACAGCAG 1497
                               *                   **     *     *  *              

consensus_6213#1      ACTGCTTCTTTGAAACTGGGGGCTGAGCTGTAACACTTGAAGACAC-AACCGGCACTGCA 265
consensus_6213#3      AAGACTC----AGGGTTGGTGGT---GCCGTCATACTTCTCGATTCCAGTCGGCTTAAAG 218
consensus_6213#2      TTCGGGCTTGGCTTGCTAAGAAAGGGATTCCTTTCCATGAGGACGCTAAGAAAGGGGGAG 237
consensus_6213#0      TAATCTCAAGACACTCAATGTGAGAAACAACCATCTATCAGGAATCATCCCGGATGGCCT 1557
                                                           *   **  *              

consensus_6213#1      TT-GGCTCCT-GTGAGGACAATGTTGTTGAC-TTGGCCTTG-GGGCTGTTGACG--CTTC 319
consensus_6213#3      CC-GGCT--------GGCCAATCCACTCGAT-GCAGATC----ATTTGTGAAGG--CAGC 262
consensus_6213#2      CG-GATCCTAAGAGTGGCTGATGGAGCTGAAATTAAAGTGA-TGGCCGTTGGGGAGCTTC 295
consensus_6213#0      CCTGAGCTTCCAACAGCTTGGTGTGATCCTCCTTGGAGGGAATGATTTTCATGGTCCAAT 1617
                         *           *     *                          *    *  *   

consensus_6213#1      GGCTTCGGACAC-TCTTTTACGAAGGGACCTGG---CTCATAACAATTGAAACACACC-C 374
consensus_6213#3      AACTCCGTCCATATCGTCGTCGTAGCGATCTGG---TGAATGATGGGNGAGTATGGCC-T 318
consensus_6213#2      ATCTTCGACTTCCAAGCGGCAATAATCTTTTAC---TTCATGATGTTCTTTATGCTCC-C 351
consensus_6213#0      ACCATTGGACCT-TTGCTTCAACAACTATCTCCACTTTGTTGATCTCTCCAACAATCAAT 1676
                        *   *                *      *         * *             *   

consensus_6213#1      GCTGCTCCCTTCCATTA--CTGGTATCTTCTTGA-GATTG-AT------CCTGCTGAACT 424
consensus_6213#3      CTTGCTGCGCGGCGCTGG-TTGATGGTGTCGCGAAGATCG-ACGGGGCGCCTTCGATGTG 376
consensus_6213#2      TCTGTTAAGAGGAACC---TTATTTCTGTAATGG-TTTTA-ACGAA-CAGTGGTTATGT- 404
consensus_6213#0      TCTCTGGGGAGATACCAAATTGCTTCTACAATGATTTCTGGACAGATTTGCCAATGTACT 1736
                        *                 *  *        *        *                  

consensus_6213#1      --GGCACCGACTGATTAGCTTGC-------TCGATATTAACTTCATTGCTTTCAT----- 470
consensus_6213#3      --GGGAGTGTGNGGTCGTTCAAC-------TCGACGCTCCCTATGTCG-TTCGGG----- 421
consensus_6213#2      --GTCACACCCTGATTTTCGTGT-------TAGGATTTA--TAAATTA-TTTAAT----- 447
consensus_6213#0      TCAACGATGACCCATTCTCAGGCAATATCACAGAGCGCATGTCTGTCGACTTCACGACGA 1796
                                    *                 *        *   *    *         

consensus_6213#1      TAGCCTCTGATTTGATCT-CACCAGCGATGCTCAACTG-TTGCGACTGTTCTTGACCAGC 528
consensus_6213#3      AGGCGAGCGGACAGATCG-CTCACCATGTCCCCTGCTC-CTGCGACTAGGTCCGGCAC-- 477
consensus_6213#2      AAATTATTAATAGAATTTATATGAAATGTTCATTAAT--TTACAAGTGAAGTTAAAAA-- 503
consensus_6213#0      AAGGCGAGAACCTTACCTACATGGGAGAGCCTCTAGTGCTCATGACGGGCATTGATCTGT 1856
                                    *               *     *       *               

consensus_6213#1      GGAAGAAGATTCACCAATTTGGAGGGACTTAATACGCTGGGTTTGGGTACTACCTTGTGG 588
consensus_6213#3      ------------------------------------------------------------
consensus_6213#2      ------------------------------------------------------------
consensus_6213#0      CCATGAATCAATTGTCAGGCGCCATCCCTCCGCCATTAGGTTTCCTGAGGCAGCTCAAGT 1916
                                                                                  

consensus_6213#1      CTCCTAGAAAGACATCCTTCCTGTCTTACGAGTGTCCGCTCCTGTTTTGCTTGGCCTCCA 648
consensus_6213#3      ------------------------------------------------------------
consensus_6213#2      ------------------------------------------------------------
consensus_6213#0      CTCTAAACTTATCACATAACCAACTTGTTGGCCCGATACCAGAGACATTCATGTATATGC 1976
                                                                                  

consensus_6213#1      GGCGGAATGGCTTTGGCAACCAACTTCCGGAAGATCC----------------------- 685
consensus_6213#3      ------------------------------------------------------------
consensus_6213#2      ------------------------------------------------------------
consensus_6213#0      AGGATATGGAGAGCCTTGACCTCTCATACAACCACCTCAATGGCAGCCTGCCTATGCAGC 2036
                                                                                  

consensus_6213#1      ------------------------------------------------------------
consensus_6213#3      ------------------------------------------------------------
consensus_6213#2      ------------------------------------------------------------
consensus_6213#0      TGGCAAATCTCTCCTTCCTGTGCTCGTTCAATGTCGCCTACAACAACCTCTCTGGTGAGA 2096
                                                                                  

consensus_6213#1      ------------------------------------------------------------
consensus_6213#3      ------------------------------------------------------------
consensus_6213#2      ------------------------------------------------------------
consensus_6213#0      TACCCTTCCAACAACAGCTTGGGACATTCGATGAATCGGCATTCGAGGGGAATGACAATC 2156
                                                                                  

consensus_6213#1      ------------------------------------------------------------
consensus_6213#3      ------------------------------------------------------------
consensus_6213#2      ------------------------------------------------------------
consensus_6213#0      TCTGTGGTGGAATCATCAACAAAAACTGCTCATCAGTGCTGCATCAGAATCAAGGAGTGT 2216
                                                                                  

consensus_6213#1      ------------------------------------------------------------
consensus_6213#3      ------------------------------------------------------------
consensus_6213#2      ------------------------------------------------------------
consensus_6213#0      TCGACGCCATTGACACGTCACTTGTTTTCTGGTCCTACGTTTTTGGGTGTTTTGCACTTG 2276
                                                                                  

consensus_6213#1      ------------------------------------------------------------
consensus_6213#3      ------------------------------------------------------------
consensus_6213#2      ------------------------------------------------------------
consensus_6213#0      GATTTTGGGGCACCGTGGCATTGCTGATATGGGATGAAGTGTGCAGGAGGAGACTGTGTG 2336
                                                                                  

consensus_6213#1      ------------------------------------------------------------
consensus_6213#3      ------------------------------------------------------------
consensus_6213#2      ------------------------------------------------------------
consensus_6213#0      ACTTGATGGATGCTCTAATGTTTAAGCTGGGTTGGGAATTTGTGCCTTGAATCCTGATAT 2396
                                                                                  

consensus_6213#1      ------------------------------------------------------------
consensus_6213#3      ------------------------------------------------------------
consensus_6213#2      ------------------------------------------------------------
consensus_6213#0      GTCTAGCTAAGAGTCTAGGAGACATGGAAAGACAGAGCAATCCCTTCTTTTTTTTTGCAC 2456
                                                                                  

consensus_6213#1      ------------------------------------------------------------
consensus_6213#3      ------------------------------------------------------------
consensus_6213#2      ------------------------------------------------------------
consensus_6213#0      GAGATGCACATGCTGTCACATCCTGATTTTCGTTTCAGGATTTATAAATTATTTAATAAA 2516
                                                                                  

consensus_6213#1      ------------------
consensus_6213#3      ------------------
consensus_6213#2      ------------------
consensus_6213#0      TTAATAATAGAATTTATA 2534
                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)