These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6216#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1125 fasta sequence [ATCAACCAAACAGTATTTTTGACTGAACACACACCAATTAATCATGTGTGCGTTTCAGGTTCAGTCCACTGGTCTGCCAAATTACAACAGAGCTTAAAAACGTTTTAGACCGTCTCCAACAACGCGACGCATACTCATTTATCCGTCGTGCACACTGATTTTGGGTAAAAAAAACAGCCTCCAACGGGAGAGGCAAATACGATACGTATATTGGGTAGCGGCCAAAGCGCTAGGCAAATATCCGTTTCCTCTCTCTACCGACGCAAAACACTGGAACGGAGCTCGCGCAGTCGCGCGGTGGGCCAGGGTGAGGCGGAGCTGGTGCGGCGAGGCGGAGCTCCCGCGGCGGGGCGGGAGCGCCGTCGGGGCGCGGTCGGAGCGCGCCGTCGGGGAGCACCGTCGGGGAGCGTCGTCGGAGCGCGCCGTCGGGGAGGAGGCGTAGTGGGCCCGTAGTGGCGTCAGGGCGGAGTGCGGCCGGCGGGGCGAGTCCGCGGTGGAGCGCGGTCGTCGCAGTTCCCGCTGCTCCGTTCCGAGCATCGCCGCCACGAGGATGAACTGTGCCGCGAGCCGCCGGCGGGTGTGCTCCGCCTGCCACCGCCGCTCCGCCCCGACCACAGCCGTCGCAAGGAGTCGTGCCGCGAGCCGCCAGCGGGCGCACTCCGCCCCGAGCAACGCCGTCGCGAGGATGGGCCGCGCCATAAGCCGCCGGCGGGAGCGTTCCGCCTGGCCATCGCCGCTCCGCCCCTGTGAGGATGAACGGCGCGCATCGCCGCTGCGAGGACGACCTGGAGCCGATGGCCGCCGGAGGGAGGAGGGAGGAGAGACGAGGGCTGGGACCCGCCTGCTCCGCTGATGCCGCTGCCACGACGGGAGGACGAGGTGAAGATAGAAAAAGATTGGGAGCACTGGGTTTGCTGTTGGAGAAGGGAATTTTTGAGTGTCCGACCTTTTTACTGTGCATCACCCAATCCATGATATGAGTATCTAGAATGGGTCTCCGCTGTTGGAGACGGTCTTAGGTCCCAAGTCCCAACCGTCGGTCTCTGGAGCTGACAAAGATACATTCCAACTGTATGAGAGTACGTAGGCCGTGTTTAGTTTTAAAATATTTCTTTAAACTTTTAA] [-] EMBL AK107953 [ATCAACCAAACAGTATTTTTGACTGAACACACACCAATTAATCATGTGTGCGTTTCAGGTTCAGTCCACTGGTCTGCCAAATTACAACAGAGCTTAAAAACGTTTTAGACCGTCTCCAACAACGCGACGCATACTCATTTATCCGTCGTGCACACTGATTTTGGGTAAAAAAAACAGCCTCCAACGGGAGAGGCAAATACGATACGTATATTGGGTAGCGGCCAAAGCGCTAGGCAAATATCCGTTTCCTCTCTCTACCGACGCAAAACACTGGAACGGAGCTCGCGCAGTCGCGCGGTGGGCCAGGGTGAGGCGGAGCTGGTGCGGCGAGGCGGAGCTCCCGCGGCGGGGCGGGAGCGCCGTCGGGGCGCGGTCGGAGCGCGCCGTCGGGGAGCACCGTCGGGGAGCGTCGTCGGAGCGCGCCGTCGGGGAGGAGGCGTAGTGGGCCCGTAGTGGCGTCAGGGCGGAGTGCGGCCGGCGGGGCGAGTCCGCGGTGGAGCGCGGTCGTCGCAGTTCCCGCTGCTCCGTTCCGAGCATCGCCGCCACGAGGATGAACTGTGCCGCGAGCCGCCGGCGGGTGTGCTCCGCCTGCCACCGCCGCTCCGCCCCGACCACAGCCGTCGCAAGGAGTCGTGCCGCGAGCCGCCAGCGGGCGCACTCCGCCCCGAGCAACGCCGTCGCGAGGATGGGCCGCGCCATAAGCCGCCGGCGGGAGCGTTCCGCCTGGCCATCGCCGCTCCGCCCCTGTGAGGATGAACGGCGCGCATCGCCGCTGCGAGGACGACCTGGAGCCGATGGCCGCCGGAGGGAGGAGGGAGGAGAGACGAGGGCTGGGACCCGCCTGCTCCGCTGATGCCGCTGCCACGACGGGAGGACGAGGTGAAGA ] [+] EMBL AK109532 [ ATATTGGGTAGCGGCCAAAGCGCTAGGCAAATATCCGTTTCCTCTCTCTACCGACGCAAAACACTGGAACGGAGCTCGCGCAGTCGCGCGGTGGGCCAGGGTGAGGCGGAGCTGGTGCGGCGAGGCGGAGCTCCCGCGGCGGGGCGGGAGCGCCGTCGGGGCGCGGTCGGAGCGCGCCGTCGGGGAGCACCGTCGGGGAGCGTCGTCGGAGCGCGCCGTCGGGGAGGAGGCGTAGTGGGCCCGTAGTGGCGTCAGGGCGGAGTGCGGCCGGCGGGGCGAGTCCGCGGTGGAGCGCGGTCGTCGCAGTTCCCGCTGCTCCGTTCCGAGCATCGCCGCCACGAGGATGAACTGTGCCGCGAGCCGCCGGCGGGTGTGCTCCGCCTGCCACCGCCGCTCCGCCCCGACCACAGCCGTCGCAAGGAGTCGTGCCGCGAGCCGCCAGCGGGCGCACTCCGCCCCGAGCAACGCCGTCGCGAGGACGGGCCGCGCCATAAGCCGCCGGCGGGAGCGTTCCGCCTGGCCATCGCCGCTCCGCCCCTGTGAGGATGAACGGCGCGCATCGCCGCTGCGAGGACGACCTGGAGCCGATGGCCGCCGGAGGGAGGAGGGAGGAGAGACGAGGGCTGGGACCCGCCTGCTCCGCTGATGCCGCTGCCACGACGGGAGGACGAGGTGAAGATAGAAAAAGATTGGGAGCACTGGGTTTGCTGTTGGAGAAGGGAATTTTTGAGTGTCCGACCTTTTTACTGTGCATCACCCAATCCATGATATGAGTATCTAGAATGGGTCTCCGCTGTTGGAGACGGTCTTAGGTCCCAAGTCCCAACCGTCGGTCTCTGGAGCTGACAAAGATACATTCCAACTGTATGAGAGTACGTAGGCCGTGTTTAGTTTTAAAATATTTCTTTAAACTTTTAA] consensusID : consensus_6216#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 558 fasta sequence [GGTGTGCTCCGCCTGCCCACNGCCGTTCCGCCCCGACCACAGCCGTCTCNAGGAGTCGTGCCGCGAGCCACCAGCGGGCGCATTCCGCCCCGAGCAACGCCGTCGCGAGGACGGACCGCGCCACAAGCCGCCGGCGGGAGCGTTCCACCTGGCCATCACCGCTCCGCCCCTGTGAGNATGAACGGCGNGCATCGCCGCCGCGAGGACGACCTGGAGCCGATGGCCGCCGAAGGGAGGAGGGAGGANAGACGAGGGCTGGGACCCGCCTGCTCCGCTGACGCCGCTGCCACGACGGGAGGACGAGGCGAANAGAGAAGAAGATTGGGAGCNCTGGGTAGGCTGTTGGANAAAGGAATTTTTGAGTGTCCGACCTTTTTACTGTGCATCACCCAATCCATGATATGAGTCTCTAGAATGGGTCTCCGCTATTGGAGACAGTNTTAGGGACCATGTTCCATAGTTGAGCCATCGCATGGAGTACAATGGAGTGGAGTACTTCGTTAATGTAGGNCAGTAGGTATTGTCCCGTTCGACAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU100862 [GGTGTGCTCCGCCTGCCCACNGCCGTTCCGCCCCGACCACAGCCGTCTCNAGGAGTCGTGCCGCGAGCCACCAGCGGGCGCATTCCGCCCCGAGCAACGCCGTCGCGAGGACGGACCGCGCCACAAGCCGCCGGCGGGAGCGTTCCACCTGGCCATCACCGCTCCGCCCCTGTGAGNATGAACGGCGNGCATCGCCGCCGCGAGGACGACCTGGAGCCGATGGCCGCCGAAGGGAGGAGGGAGGANAGACGAGGGCTGGGACCCGCCTGCTCCGCTGACGCCGCTGCCACGACGGGAGGACGAGGCGAANAGAGAAGAAGATTGGGAGCNCTGGGTAGGCTGTTGGANAAAGGAATTTTTGAGTGTCCGACCTTTTTACTGTGCATCACCCAATCCATGATATGAGTCTCTAGAATGGGTCTCCGCTATTGGAGACAGTNTTAGGGACCATGTTCCATAGTTGAGCCATCGCATGGAGTACAATGGAGTGGAGTACTTCGTTAATGTAGGNCAGTAGGTATTGTCCCGTTCGACAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_6216#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 363 fasta sequence [TCATCTGTTCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAACGGTCAACCAGTACCACCAGCGGGGCGGAGCTCGTGCAGTCGCGCGGTGGGCCAGGGTGAGGCGGAGCTGGTGCGGCGAGGCGGAGCTCGCACGGCGGGGCGGGAGCGCCGTAGGGGCGCGGTCGGAGCGCGCCGTCAGGGAGCACCGTCGGAGCGCGCCGTCGGGGAGGAGGCGTCCTGCTCCCGTAGTGGCGTCAGGGCGGANTGCGGCCGGCGGGGCGAGTCC] [+] EMBL AU100861 [TCATCTGTTCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAACGGTCAACCAGTACCACCAGCGGGGCGGAGCTCGTGCAGTCGCGCGGTGGGCCAGGGTGAGGCGGAGCTGGTGCGGCGAGGCGGAGCTCGCACGGCGGGGCGGGAGCGCCGTAGGGGCGCGGTCGGAGCGCGCCGTCAGGGAGCACCGTCGGAGCGCGCCGTCGGGGAGGAGGCGTCCTGCTCCCGTAGTGGCGTCAGGGCGGANTGCGGCCGGCGGGGCGAGTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6216#0 ATCAACCAAACAGTATTTTTGACTGAACACACACCAATTAATCATGTGTGCGTTTCAGGT 60 consensus_6216#1 ------------------------------------------------------------ consensus_6216#2 ------------------------------------------------------------ consensus_6216#0 TCAGTCCACTGGTCTGCCAAATTACAACAGAGCTTAAAAACGTTTTAGACCGTCTCCAAC 120 consensus_6216#1 ------------------------------------------------------------ consensus_6216#2 ------------------------------------------------------------ consensus_6216#0 AACGCGACGCATACTCATTTATCCGTCGTGCACACTGATTTTGGGTAAAAAAAACAGCCT 180 consensus_6216#1 ------------------------------------------------------------ consensus_6216#2 ------------------------------------------------------------ consensus_6216#0 CCAACGGGAGAGGCAAATACGATACGTATATTGGGTAGCGGCCAAAGCGCTAGGCAAATA 240 consensus_6216#1 ------------------------------------------------------------ consensus_6216#2 ------------------------------------------------------------ consensus_6216#0 TCCGTTTCCTCTCTCTACCGACGCAAAACACTGGAACGGAGCTCGCGCAGTCGCGCGGTG 300 consensus_6216#1 ------------------------------------------------------------ consensus_6216#2 ------------------------------------------------------------ consensus_6216#0 GGCCAGGGTGAGGCGGAGCTGGTGCGGCGAGGCGGAGCTCCCGCGGCGGGGCGGGAGCGC 360 consensus_6216#1 ------------------------------------------------------------ consensus_6216#2 ------------------------------------------------------------ consensus_6216#0 CGTCGGGGCGCGGTCGGAGCGCGCCGTCGGGGAGCACCGTCGGGGAGCGTCGTCGGAGCG 420 consensus_6216#1 ------------------------------------------------------------ consensus_6216#2 ------------------------------------------------------------ consensus_6216#0 CGCCGTCGGGGAGGAGGCGTAGTGGGCCCGTAGTGGCGTCAGGGCGGAGTGCGGCCGGCG 480 consensus_6216#1 ------------------------------------------------------------ consensus_6216#2 ------------------------------------------------------------ consensus_6216#0 GGGCGAGTCCGCGGTGGAGCGCGGTCGTCGCAGTTCCCGCTGCTCCGTTCCGAGCATCGC 540 consensus_6216#1 ------------------------------------------------------------ consensus_6216#2 ------------------------------------------------------------ consensus_6216#0 CGCCACGAGGATGAACTGTGCCGCGAGCCGCCGGCGGGTGTGCTCCGCCTGCC-ACCGCC 599 consensus_6216#1 ------------------------------------GGTGTGCTCCGCCTGCCCACNGCC 24 consensus_6216#2 --------------------------------------------TCATCTGTT---CGTA 13 * *** * consensus_6216#0 GCTCCGCCCCGACCACAGCCGTCGCAAGGAGTCGTGCCGCGAGCCGCCAGCGGGCGCACT 659 consensus_6216#1 GTTCCGCCCCGACCACAGCCGTCTCNAGGAGTCGTGCCGCGAGCCACCAGCGGGCGCATT 84 consensus_6216#2 AATACGGTTCAATG--AACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCC 71 * ** * * * * ** ** ***** * * * *** consensus_6216#0 CCGCCCCGAGCAACGCCGTCGCGAGGATGGGCCGCGCCATAAGCCGCCG--GCGGGAGCG 717 consensus_6216#1 CCGCCCCGAGCAACGCCGTCGCGAGGACGGACCGCGCCACAAGCCGCCG--GCGGGAGCG 142 consensus_6216#2 ACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCA 131 * ** * *** **** * ***** ** * * * ** * *** consensus_6216#0 TTCCGCCTGGCCATCGCCGCTCCGCCCCTGTGAGGATGAACGGCGCGCATCGCCGCTGCG 777 consensus_6216#1 TTCCACCTGGCCATCACCGCTCCGCCCCTGTGAGNATGAACGGCGNGCATCGCCGCCGCG 202 consensus_6216#2 CTGAAACGGTCAACCAGTAC----CACCAGCGGGG-----CGGAGCTCGT-GCAGTCGCG 181 * * * * * * * * ** * * * *** * * * ** * *** consensus_6216#0 AGGACGACCTGGAGCCGATGGCCGCCGGAGGGAGGAGGGAGGAGAGACGAGGGCTGGGAC 837 consensus_6216#1 AGGACGACCTGGAGCCGATGGCCGCCGAAGGGAGGAGGGAGGANAGACGAGGGCTGGGAC 262 consensus_6216#2 ---------------CGGTGG--GCCAGGGTGAGGCGGAGCTGGTGCGGCGAGGCGGAGC 224 ** *** *** * **** ** * * * * ** * consensus_6216#0 CCGCCTGCTCCGCTGATGCCGCTGCCACGACGGGAGGACGAGGTGAAGATAGAAAAAGAT 897 consensus_6216#1 CCGCCTGCTCCGCTGACGCCGCTGCCACGACGGGAGGACGAGGCGAANAGAGAAGAAGAT 322 consensus_6216#2 TCGCACGGCGGGGCGGGAGCGCCGTAGGGGCGC--GGTCGGAGCGCGCCGTCAGGGAGCA 282 *** * * * *** * * ** ** ** * * * ** consensus_6216#0 TGGGAGCACTGGGTTTGCTGTTGGAGAAGGGAATTTTTGAGTGTCCGACCTTTTTACTGT 957 consensus_6216#1 TGGGAGCNCTGGGTAGGCTGTTGGANAAAGGAATTTTTGAGTGTCCGACCTTTTTACTGT 382 consensus_6216#2 CCG----TCGGAGCGCGCCGTCGGGGAGGAGGCGTCCT--GCTCCCGTAGTGGCGTCAGG 336 * * * * ** ** ** * * * * * *** * * * consensus_6216#0 GCATCACCCAATCCATGATATGAGTATCTAGAATGGGTCTCCGCTGTTGGAGACGGTCTT 1017 consensus_6216#1 GCATCACCCAATCCATGATATGAGTCTCTAGAATGGGTCTCCGCTATTGGAGACAGTNTT 442 consensus_6216#2 GCGGANTGCGGCCGGCGGGGCGAGTCC--------------------------------- 363 ** * * * **** consensus_6216#0 AGGTCCCAAGTCCCAACCGTCGGTCTC----TGGAGC-TGACAAAGATACATTCCAACTG 1072 consensus_6216#1 AGGGACCATGTTCCATAGTTGAGCCATCGCATGGAGTACAATGGAGTGGAGTACTTCGTT 502 consensus_6216#2 ------------------------------------------------------------ consensus_6216#0 TATGAGAGTACGTAGGCCGTGTTTAGTTTTAAAATATTTCTTTAAACTTTTAA--- 1125 consensus_6216#1 AATGTAGGNCAGTAGGTATTGTCCCGTTCGACAAAAAAAAAAAAAAAAAAAAAAAA 558 consensus_6216#2 -------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||