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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6217#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1612 fasta sequence
[ACCTCGTCTACACTTCTCCAAATCCCCCCACGGCGCATCGCCCGCTCGCCCTCGCCGCCACCACCACCCGCCTCCGGCCACCGCACACTAGGGCGGCTTGAGCCCCAGCGCCGCCGCCATGGACGAGGAAGCGAAGCCGAACCCTAACGCCGACGCGGCGCCTGCTGCAGCGGAGGCAGCAGCGTCTTCTCCGCCGCCGCTTTCGAGCTCGGAGTCGGCGGAGGGGAAGGATAAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGCGGGGGATTTGGTGGAGAAGCTGGTGGAGTTGGTGGAAGAGATCGCCGCCATCTCGGACTTCAGGAATGCATACCGGCGGCAGTTCTGCAACCTGTCGCGGCGGATCCGGCTGCTCGCGCCCATGCTGGAGGAGGCCAAGGAGGGGCCGCGGCCGCTGCCGGATGTGTCGTATTCCGCTCTCCGGCGGCTCAGGGAGGCGCTCGCTGACTCCAGGGAGCTCCTCCGGCTCGGCGTCAGCGGTAGCAAGATCTCCCTGGTTCTTGAGAGAGAGAAAATAATGAAGTCTTTCCAGGATATTACTGCAAGGCTTGAACAAGCCTTAGGTTTAATCTCATTTGATGAACTTGACATATCAGATGAAGTAAGAGAACAGGTTGAATTGGTACATGCTCAGTTCAAAAGAGCTAAAGAACGATCTGATCCATCTGATGATGATCTCTTTAATGATTTGGTGTCCGTCTACAACTCAAGCACCAGTGCTAATGTTGACCCAGATATTCTCCAGAGGTTATCTGACAAGTTGCAGCTTGCCACTATATCAGACCTCAATCAAGAATCATTGATCTTGCACGAGATGGCTAGTGGCGGTGATCCTGGTGCCGTTGTTGAGAAGATGTCAATGCTGCTAAAAAGAATCAAGGATTTTGTGCAGAGTCGAGATCCTGAAATGGGAACCCCAGTAAATACGACAGAACTTTCGGGAAAAGACAACATGGCATCTCTGATTGTTCCGGATGATTTCCGTTGCCCCATATCGCTGGATTTAATGAAAGATCCAGTTATTGTTGCCACTGGACAGACTTATGAGCGAGGATGCATAGAGAGATGGTTGGAGGCTGGGCATGACACCTGTCCAAAGACACAGCAGAAGCTTCCCAATAAATCTCTAACCCCAAATTATGTCTTACGCAGCCTTATAGCTCAATGGTGTGAAGCAAATGGTATGGAGCCACCAAAACGTGCTGCTCAACATCATAATGCACCAGCATCATGTACCGCTGCTGAACATAGCAACGTCGTTGAGCTTCTTCAGAAATTATTGTCACAAAACCTAGAAGACCAGCGTGAGGCTGCAGGTATGCTTCGTCAGCTTGCCAAGCGCAGTCCTGAAAATCGTGCTTGTATAGGAGATGCTGGTGCTATTCCTATTCTTGTTAGCCTGCTATCTATAACTGATGTTAGCACTCAAGAGCATGTAGTTACTGCTCTCTTGAATCTTTCGATATATGAAGAGAACAAGGCAAGAATAATCACCTCTGGAGCTGTTCCTGGAGTAGTTCATGTGTTGAAGAGGGGAAGCATGGAGGCTCGGGAGAATTCAGCTGCCACACTGTTCAGTCTT]
[+] EMBL AK121978 [ACCTCGTCTACACTTCTCCAAATCCCCCCACGGCGCATCGCCCGCTCGCCCTCGCCGCCACCACCACCCGCCTCCGGCCACCGCACACTAGGGCGGCTTGAGCCCCAGCGCCGCCGCCATGGACGAGGAAGCGAAGCCGAACCCTAACGCCGACGCGGCGCCTGCTGCAGCGGAGGCAGCAGCGTCTTCTCCGCCGCCGCTTTCGAGCTCGGAGTCGGCGGAGGGGAAGGATAAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGCGGGGGATTTGGTGGAGAAGCTGGTGGAGTTGGTGGAAGAGATCGCCGCCATCTCGGACTTCAGGAATGCATACCGGCGGCAGTTCTGCAACCTGTCGCGGCGGATCCGGCTGCTCGCGCCCATGCTGGAGGAGGCCAAGGAGGGGCCGCGGCCGCTGCCGGATGTGTCGTATTCCGCTCTCCGGCGGCTCAGGGAGGCGCTCGCTGACTCCAGGGAGCTCCTCCGGCTCGGCGTCAGCGGTAGCAAGATCTCCCTGGTTCTTGAGAGAGAGAAAATAATGAAGTCTTTCCAGGATATTACTGCAAGGCTTGAACAAGCCTTAGGTTTAATCTCATTTGATGAACTTGACATATCAGATGAAGTAAGAGAACAGGTTGAATTGGTACATGCTCAGTTCAAAAGAGCTAAAGAACGATCTGATCCATCTGATGATGATCTCTTTAATGATTTGGTGTCCGTCTACAACTCAAGCACCAGTGCTAATGTTGACCCAGATATTCTCCAGAGGTTATCTGACAAGTTGCAGCTTGCCACTATATCAGACCTCAATCAAGAATCATTGATCTTGCACGAGATGGCTAGTGGCGGTGATCCTGGTGCCGTTGTTGAGAAGATGTCAATGCTGCTAAAAAGAATCAAGGATTTTGTGCAGAGTCGAGATCCTGAAATGGGAACCCCAGTAAATACGACAGAACTTTCGGGAAAAGACAACATGGCATCTCTGATTGTTCCGGATGATTTCCGTTGCCCCATATCGCTGGATTTAATGAAAGATCCAGTTATTGTTGCCACTGGACAGACTTATGAGCGAGGATGCATAGAGAGATGGTTGGAGGCTGGGCATGACACCTGTCCAAAGACACAGCAGAAGCTTCCCAATAAATCTCTAACCCCAAATTATGTCTTACGCAGCCTTATAGCTCAATGGTGTGAAGCAAATGGTATGGAGCCACCAAAACGTGCTGCTCAACATCATAATGCACCAGCATCATGTACCGCTGCTGAACATAGCAACGTCGTTGAGCTTCTTCAGAAATTATTGTCACAAAACCTAGAAGACCAGCGTGAGGCTGCAGGTATGCTTCGTCAGCTTGCCAAGCGCAGTCCTGAAAATCGTGCTTGTATAGGAGATGCTGGTGCTATTCCTATTCTTGTTAGCCTGCTATCTATAACTGATGTTAGCACTCAAGAGCATGTAGTTACTGCTCTCTTGAATCTTTCGATATATGAAGAGAACAAGGCAAGAATAATCACCTCTGGAGCTGTTCCTGGAGTAGTTCATGTGTTGAAGAGGGGAAGCATGGAGGCTCGGGAGAATTCAGCTGCCACACTGTTCAGTCTT]
[+] EMBL CA758916 [ TGTGAAGCAAATGGTATGGAGCCACCAAAACGTGCTGCTCAACATCATAATGCACCAGCATCATGTACCGCTGCTGAACATAGCAACGTCGTTGAGCTTCTTCAGAAATTATTGTCACAAAACCTAGAAGACCAGCGTGAGGCTGCAGGTATGCTTCGTCAGCTTGCCAAGCGCAGTCCTGAAAATCGTGCTTGTATAGGAGATGCTGGTGCTATTCCTATTCTTGTTAGCCTGCT ]
consensusID : consensus_6217#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 776 fasta sequence
[TACACTTCTCCAAATCCCCCCACGGCGCATCGCCCGCTCGCCCTCGCCGCCACCACCACCCGCCTCCGGCCACCGCACACTAGGGCGGCTTGAGCCCCAGCGCCGCCGCCATGGACGAGGAAGCGAAGCCGAACCCTAACGCCGACGCGGCGCCTGCTGCAGCGGAGGCAGCAGCGTCTTCTCCGCCGCCGCTTTCGAGCTCGGAGTCGGCGGAGGGGAAGGATAAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGCGGGGGATTTGGTGGAGAAGCTGGTGGAGTTGGTGGAAGAGATCGCCGCCATCTCGGACTTCAGGAATGCATACCGGCGGCAGTTCTGCAACCTGTCGCGGCGGATCCGGCTGCTCGCGCCCATGCTGGAGGAGGCCAAGGAGGGGCCGCGGCCGCTGCCGGATGTGTCGTATTCCGCTCTCCGGCGGCTCAGGGAGGCGCTCGCTGACTCCAGGGAGCTCCTCCGGCTCGGCGTCAGCGGTAGCAAGATCTCCCTGGTGCGTTTCTCGCTTGAGGCTCGTTGTTTTGTTGCCATATTTGGTCGTTAAAAGATTACATTTCTTCTGCTTATGGCCTTTCGAGTTTATTTAGGATTTAATAGGAGAATTTGCCTCAAGAATTGGAGCGGATTTTAGTGCGTTCATACTCCAAACTTCGTATTAGCACTTCCAATTGTCCCCTGTGATATGACCATTTTAGATAACTCTTTGACATGATCTACTGTATCTCTACATTTTTAAAATATTTTGTTGTTT]
[+] EMBL AK109303 [TACACTTCTCCAAATCCCCCCACGGCGCATCGCCCGCTCGCCCTCGCCGCCACCACCACCCGCCTCCGGCCACCGCACACTAGGGCGGCTTGAGCCCCAGCGCCGCCGCCATGGACGAGGAAGCGAAGCCGAACCCTAACGCCGACGCGGCGCCTGCTGCAGCGGAGGCAGCAGCGTCTTCTCCGCCGCCGCTTTCGAGCTCGGAGTCGGCGGAGGGGAAGGATAAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGCGGGGGATTTGGTGGAGAAGCTGGTGGAGTTGGTGGAAGAGATCGCCGCCATCTCGGACTTCAGGAATGCATACCGGCGGCAGTTCTGCAACCTGTCGCGGCGGATCCGGCTGCTCGCGCCCATGCTGGAGGAGGCCAAGGAGGGGCCGCGGCCGCTGCCGGATGTGTCGTATTCCGCTCTCCGGCGGCTCAGGGAGGCGCTCGCTGACTCCAGGGAGCTCCTCCGGCTCGGCGTCAGCGGTAGCAAGATCTCCCTGGTGCGTTTCTCGCTTGAGGCTCGTTGTTTTGTTGCCATATTTGGTCGTTAAAAGATTACATTTCTTCTGCTTATGGCCTTTCGAGTTTATTTAGGATTTAATAGGAGAATTTGCCTCAAGAATTGGAGCGGATTTTAGTGCGTTCATACTCCAAACTTCGTATTAGCACTTCCAATTGTCCCCTGTGATATGACCATTTTAGATAACTCTTTGACATGATCTACTGTATCTCTACATTTTTAAAATATTTTGTTGTTT]
[+] EMBL CB636818 [ CCGGCCACCGCACACTAGGGCGGCTTGAGCCCCAGCGCCGCCGCCATGGACGAGGAAGCGAAGCCGAACCCTAACGCCGACGCGGCGCCTGCTGCAGCGGAGGCAGCAGCGTCTTCTCCGCCGCCGCTTTCGAGCTCGGAGTCGGCGGAGGGGAAGGATAAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6217#0 ACCTCGTCTACACTTCTCCAAATCCCCCCACGGCGCATCGCCCGCTCGCCCTCGCCGCCA 60
consensus_6217#1 --------TACACTTCTCCAAATCCCCCCACGGCGCATCGCCCGCTCGCCCTCGCCGCCA 52
****************************************************
consensus_6217#0 CCACCACCCGCCTCCGGCCACCGCACACTAGGGCGGCTTGAGCCCCAGCGCCGCCGCCAT 120
consensus_6217#1 CCACCACCCGCCTCCGGCCACCGCACACTAGGGCGGCTTGAGCCCCAGCGCCGCCGCCAT 112
************************************************************
consensus_6217#0 GGACGAGGAAGCGAAGCCGAACCCTAACGCCGACGCGGCGCCTGCTGCAGCGGAGGCAGC 180
consensus_6217#1 GGACGAGGAAGCGAAGCCGAACCCTAACGCCGACGCGGCGCCTGCTGCAGCGGAGGCAGC 172
************************************************************
consensus_6217#0 AGCGTCTTCTCCGCCGCCGCTTTCGAGCTCGGAGTCGGCGGAGGGGAAGGATAAGGAGGA 240
consensus_6217#1 AGCGTCTTCTCCGCCGCCGCTTTCGAGCTCGGAGTCGGCGGAGGGGAAGGATAAGGAGGA 232
************************************************************
consensus_6217#0 GGAGAAGGAGGAGGAGGAGGAGGAGGAGGCGGGGGATTTGGTGGAGAAGCTGGTGGAGTT 300
consensus_6217#1 GGAGAAGGAGGAGGAGGAGGAGGAGGAGGCGGGGGATTTGGTGGAGAAGCTGGTGGAGTT 292
************************************************************
consensus_6217#0 GGTGGAAGAGATCGCCGCCATCTCGGACTTCAGGAATGCATACCGGCGGCAGTTCTGCAA 360
consensus_6217#1 GGTGGAAGAGATCGCCGCCATCTCGGACTTCAGGAATGCATACCGGCGGCAGTTCTGCAA 352
************************************************************
consensus_6217#0 CCTGTCGCGGCGGATCCGGCTGCTCGCGCCCATGCTGGAGGAGGCCAAGGAGGGGCCGCG 420
consensus_6217#1 CCTGTCGCGGCGGATCCGGCTGCTCGCGCCCATGCTGGAGGAGGCCAAGGAGGGGCCGCG 412
************************************************************
consensus_6217#0 GCCGCTGCCGGATGTGTCGTATTCCGCTCTCCGGCGGCTCAGGGAGGCGCTCGCTGACTC 480
consensus_6217#1 GCCGCTGCCGGATGTGTCGTATTCCGCTCTCCGGCGGCTCAGGGAGGCGCTCGCTGACTC 472
************************************************************
consensus_6217#0 CAGGGAGCTCCTCCGGCTCGGCGTCAGCGGTAGCAAGATCTCCCTGGTTC-TTGAGAGAG 539
consensus_6217#1 CAGGGAGCTCCTCCGGCTCGGCGTCAGCGGTAGCAAGATCTCCCTGGTGCGTTTCTCGCT 532
************************************************ * ** *
consensus_6217#0 AGAAAATAATGAAGTCTTTCCAGGATATTACTGCAAGGCTTGAACAAGCCTTAGGTTTAA 599
consensus_6217#1 TGAGGCTCGTTGTTTTGTTGCCATATTTGGTCGTTAAAAGATTACATTTCTTCTGCTTAT 592
** * * * ** * ** * * * *** *** * ***
consensus_6217#0 TCTCATTTGA-TGAACTT--GACATATCAGATGAAGTAAGAGAACAGGTTGAATTGGTAC 656
consensus_6217#1 GGCCTTTCGAGTTTATTTAGGATTTAATAGGAGAATTTGCCTCAAGAATTGGAGCGGATT 652
* ** ** * * ** ** ** ** *** * * *** * **
consensus_6217#0 ATGCTCAGTTCAAAAGAGCTAAAGAACGATCTGATCCATCTGATGATGATCTCTTTAATG 716
consensus_6217#1 TTAGTGCGTTCATACT--CCAAACTTCGTATTAGCACTTCCAAT-----TGTCCCCTGTG 705
* * ***** * * *** ** * * ** ** * ** **
consensus_6217#0 ATTTGGTGTCCGTCTACAACTCAAGCACCAGTGCTAATGTTGACCCAGATATTCTCCAGA 776
consensus_6217#1 ATATGACCATTTTAGATAACTCTTTGACATGATCTACTGT--ATCTCTACATTTTTAAAA 763
** ** * * ***** ** * *** *** * * * *** * * *
consensus_6217#0 GGTTATCTGACAAGTTGCAGCTTGCCACTATATCAGACCTCAATCAAGAATCATTGATCT 836
consensus_6217#1 TATTTTGTTGTTT----------------------------------------------- 776
** * *
consensus_6217#0 TGCACGAGATGGCTAGTGGCGGTGATCCTGGTGCCGTTGTTGAGAAGATGTCAATGCTGC 896
consensus_6217#1 ------------------------------------------------------------
consensus_6217#0 TAAAAAGAATCAAGGATTTTGTGCAGAGTCGAGATCCTGAAATGGGAACCCCAGTAAATA 956
consensus_6217#1 ------------------------------------------------------------
consensus_6217#0 CGACAGAACTTTCGGGAAAAGACAACATGGCATCTCTGATTGTTCCGGATGATTTCCGTT 1016
consensus_6217#1 ------------------------------------------------------------
consensus_6217#0 GCCCCATATCGCTGGATTTAATGAAAGATCCAGTTATTGTTGCCACTGGACAGACTTATG 1076
consensus_6217#1 ------------------------------------------------------------
consensus_6217#0 AGCGAGGATGCATAGAGAGATGGTTGGAGGCTGGGCATGACACCTGTCCAAAGACACAGC 1136
consensus_6217#1 ------------------------------------------------------------
consensus_6217#0 AGAAGCTTCCCAATAAATCTCTAACCCCAAATTATGTCTTACGCAGCCTTATAGCTCAAT 1196
consensus_6217#1 ------------------------------------------------------------
consensus_6217#0 GGTGTGAAGCAAATGGTATGGAGCCACCAAAACGTGCTGCTCAACATCATAATGCACCAG 1256
consensus_6217#1 ------------------------------------------------------------
consensus_6217#0 CATCATGTACCGCTGCTGAACATAGCAACGTCGTTGAGCTTCTTCAGAAATTATTGTCAC 1316
consensus_6217#1 ------------------------------------------------------------
consensus_6217#0 AAAACCTAGAAGACCAGCGTGAGGCTGCAGGTATGCTTCGTCAGCTTGCCAAGCGCAGTC 1376
consensus_6217#1 ------------------------------------------------------------
consensus_6217#0 CTGAAAATCGTGCTTGTATAGGAGATGCTGGTGCTATTCCTATTCTTGTTAGCCTGCTAT 1436
consensus_6217#1 ------------------------------------------------------------
consensus_6217#0 CTATAACTGATGTTAGCACTCAAGAGCATGTAGTTACTGCTCTCTTGAATCTTTCGATAT 1496
consensus_6217#1 ------------------------------------------------------------
consensus_6217#0 ATGAAGAGAACAAGGCAAGAATAATCACCTCTGGAGCTGTTCCTGGAGTAGTTCATGTGT 1556
consensus_6217#1 ------------------------------------------------------------
consensus_6217#0 TGAAGAGGGGAAGCATGGAGGCTCGGGAGAATTCAGCTGCCACACTGTTCAGTCTT 1612
consensus_6217#1 --------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||