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Oryza sativa
cluster # 6221 cluster # 6221       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6221#0 length = 1823 sequences # 4  

consensusID : consensus_6221#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1823
fasta sequence
                              [AAGTAGTACCAAGTACCAACTACCAAGTTCCAATATTAATTCGATTCTTATGTTGAGGCGCGGCCAAACTGCCGCGGGATCATCCTTCTCCCACCGGAGACTCCCGAGATGAGGCGAGGGGAATCGAAGGCGGCGACGAGGGGCGCAAATCGATCGTCGTCGTCGTCGTCGTGGAAGAGCAGATATATTGGATATGGCTTAGTTCTTGGCTTCGTGTTGATGCTGCTCTACTTGATGGTCAATGCGCAGTTCAGCAACAGCCCAAATGCTTATTTAGGCCCAGCAACAACTAGTAAAACTGAATCGATTCCTGCTACAACATATCAAGGGAATCAAGCATGGC---AAGATGGGAGCAGAGGACTGGAGGAAGGCCACAGGGAGGAGGTAGCTAG----CACAC--AACGATCAACAGGCCAACGTCAAGAGAAAGATGACGAAAGCGAGAAGCAACGAACAGAGAAAAATTCAATCGAGGAACAATTAGGCAACGACAGGAGCTCTAACTACTGGGAGGAAGGACGCCAATCCGAGAAGAAGGATACGATAGAATTCAGTGAATTCGGAGGAGGAACGGACGACTTCAACAATGTTGCCAACACCAAGCCGATCTGCGACACGTCGTTCGGCAAGTACGACATCTGCGTGCTCGACGGCGACACGCGAGCGCAGGGAGGCGGCGGCGCCGGCGCCGCCGTGGTCACCCTGGTCTCGCCGCGCGCGGCGCCGCGGGAGTGGAAGATAAAGCCCTACTCCCGGAAGTACCTCGACGGCCTCAAACCCGTCACGGTGAGGTCCGTCCCCAACCCGGAGGACGCCCCGCCGTGCACGACGCGGCTGAACGTCCCGGCGATGGTGATCGAGCTCGGCGGGCTCACCGGCAACTACTGGCACGACTTCACCGACGTGCTCGTCCCGCTCTTCATCGGCGCGCGTCGCTTCGGCGGCGAGGTCCAGCTCCTC-GTC-GTCAACCT-GCTGCCCTTCTGGGTG-GACAAGTACCGGAGGATCTTCAGCCAGATCTCGCGGCACGACATCGTCGACCTG-GAGAAGGACGACGACCGCGGCGTCGTCCGCTGTTACCCGCACGTGGTGGTCGGCTATGGCAG-CCGCAAGGAGTTCACCATCGACCCCTCCCTCGAC-GACACCGGCGGC-GGCTACACCATGGTCAACTTCACCGAGTTCTTGAGGCAATC-CTACTCGCTCCCGCGTGACCGGCCGATCAAGCTCGGTACCAACCACGGTGCACGGCCGCGGATGATGATCCTGGAGCGGACCAACAGCCGGAAGCTGATGAACCTCCCGGAGGTCGCCGCGGCCGCGCGAGCGGCGGGGTTCGAGGTGACCGTCGCCGGCGGCCGTCCGACGAGCACCTACGACGAGTTCGCCCGGGAGGTGAACTCGTACGACGTGATGGTGGGCGTGCACGGCGCCGGGCTGACCAACTGCGTGTTCCTCCCCACGGGGGCCGTGCTGCTGCAGATCGTGCCGTACGGCCGGCTCGAGAGCATCGCGCAGACGGACTTCGGCGAGCCGGCGCGAGACATGGGGCTCCGGTACATCGAGTACGACATCGCCGCCGACGAGAGCTCGCTGATGGACGTGTTCGGCAAGGACCACCCCATGATCAAGGACCCCGTCGCCGTGCACTTGAGCGGGTGGGGAAACGTGGCCGAGTGGTACCTCGGGAAGCAGGACGTGCGGGTCAACATTGAGCGGTTTAGGCCGTTTCTGACGCAGGCGTTGGAGCACCTGCAGTAGCGATCCTTTTTCTCGATGAACAAGCAAAAATGTATATGCATAACACGACGGTGCGTTTTCCTATTCTTATT]

[-] EMBL BI306711             [AAGTAGTACCAAGTACCAACTACCAAGTTCCAATATTAATTCGATTCTTATGTTGAGGCGCGGCCAAACTGCCGCGGGATCATCCTTCTCCCACCGGAGACTCCCGAGATGAGGCGAGGGGAATCGAAGGCGGCGACGAGGGGCGCAAATCGATCGTCGTCGTCGTCGTCGTGGAAGAGCAGATATATTGGATATGGCTTAGTTCTTGGCTTCGTGTTGATGCTGCTCTACTTGATGGTCAATGCGCAGTTCAGCAACAGCCCAAATGCTTATTTAGGCCCAGCAACAACTAGTAAAACTGAATCGATTCCTGCTACAACATATCAAGGGAATCAAGCATGGC   AAGATGGGAGCAGAGGACTGGAGGAAGGCCACAGGGAGGAGGTAGCTAG    CACAC  AACGATCAACAGGCCAACGTCAAGAGAAAGATGACGAAAGCGAGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AK121999             [                                                                                   CCTTCTGCCACCGGAGACTCCCGAGATGAGGCGAGGGGAATCGAAGGCGGCGACGAGGGGCGCAAATCGATCGTCGTCGTCGTCGTCGTGGAAGAGCAGATATATTGGATATGGCTTAGTTCTTGGCTTCGTGTTGGTGCTGCTCTACTTGATGGTCAATGCGCAGTTCAGCAACAGCCCAAATGCTTATTTAGGCCCAGCAACAACTAGTAAAACTGAATCGATTCCTGCTACAACATATCAAGGGAATCAAGCATGGCAAGAAGATGGGAGCAGAGGACTGGAGGAAGGCCACAGGGAGGAGGTAGCTAGTACACACACGGAACGATCAACAGGCCAACGTCAAGAGAAAGATGACGAAAGCGAGAAGCAACGAACAGAGAAAAATTCAATCGAGGAACAATTAGGCAACGACAGGAGCTCTAACTACTGGGAGGAAGGACGCCAATCCGAGAAGAAGGATACGATAGAATTCAGTGAATTCGGAGGAGGAACGGACGACTTCAACAATGTTGCCAACACCAAGCCGATCTGCGACACGTCGTTCGGCAAGTACGACATCTGCGTGCTCGACGGCGACACGCGAGCGCAGGGAGGCGGCGGCGCCGGCGCCGCCGTGGTCACCCTGGTCTCGCCGCGCGCGGCGCCGCGGGAGTGGAAGATAAAGCCCTACTCCCGGAAGTACCTCGACGGCCTCAAACCCGTCACGGTGAGGTCCGTCCCCAACCCGGAGGACGCCCCGCCGTGCACGACGCGGCTGAACGTCCCGGCGATGGTGATCGAGCTCGGCGGGCTCACCGGCAACTACTGGCACGACTTCACCGACGTGCTCGTCCCGCTCTTCATCGGCGCGCGTCGCTTCGGCGGCGAGGTCCAGCTCCTC GTC GTCAACCT GCTGCCCTTCTGGGTG GACAAGTACCGGAGGATCTTCAGCCAGATCTCGCGGCACGACATCGTCGACCTG GAGAAGGACGACGACCGCGGCGTCGTCCGCTGTTACCCGCACGTGGTGGTCGGCTATGGCAG CCGCAAGGAGTTCACCATCGACCCCTCCCTCGAC GACACCGGCGGC GGCTACACCATGGTCAACTTCACCGAGTTCTTGAGGCAATC CTACTCGCTCCCGCGTGACCGGCCGATCAAGCTCGGTACCAACCACGGTGCACGGCCGCGGATGATGATCCTGGAGCGGACCAACAGCCGGAAGCTGATGAACCTCCCGGAGGTCGCCGCGGCCGCGCGAGCGGCGGGGTTCGAGGTGACCGTCGCCGGCGGCCGTCCGACGAGCACCTACGACGAGTTCGCCCGGGAGGTGAACTCGTACGACGTGATGGTGGGCGTGCACGGCGCCGGGCTGACCAACTGCGTGTTCCTCCCCACGGGGGCCGTGCTGCTGCAGATCGTGCCGTACGGCCGGCTCGAGAGCATCGCGCAGACGGACTTCGGCGAGCCGGCGCGAGACATGGGGCTCCGGTACATCGAGTACGACATCGCCGCCGACGAGAGCTCGCTGATGGACGTGTTCGGCAAGGACCACCCCATGATCAAGGACCCCGTCGCCGTGCACTTGAGCGGGTGGGGAAACGTGGCCGAGTGGTACCTCGGGAAGCAGGACGTGCGGGTCAACATTGAGCGGTTTAGGCCGTTTCTGACGCAGGCGTTGGAGCACCTGCAGTAGCGATCCTTTTTCTCGATGAACAAGCAAAAATGTATATGCATAACACGACGGTGCGTTTTCCTATTCTTATT]
[-] EMBL BI810891             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CCCGCTCTTCATCGGCGCGCATCACTTC GCGGCGAGGTCCAGCTCCTCAGTCAGTCAACCTGGCTGCCCTTCTGGGTGTGACAAGTACCGGAGGATCTTCAGCCAGATCTCGCGGCACAACATCGTCGACCTGTGAGAAGGACGACGACCGCGGCGTCGTCCGCTGTTACCCGCACGTGGTGGTCGGCTATGGCAGTCCGCAAGGAGTTCACCATCGACCCCTCCCTCGACAGACACCGGCGGCAGGCTACACCATGGTCAACTTCACCGAGTTCTTGAGGCAATCACTACTCGCTCCCGCGTGACCGGCCGATCAAGCTCGGTACCAACCACGGTGCACGGCCGCGGATGATGATCCTGGAGCGGACCAACAGCCGGAAGCTGATGAACCTCCCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CF325635             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GGGGTTCGAGGTGACCGTCGCCGGCGGCCGTCCGACGAGCACCTACGACGAGTTCGCCCGGGAGGTGAACTCGTACGACGTGATGGTGGGCGTGCACGGCGCCGGGCTGACCAACTGCGTGTTCCTCCCCACGGGGGCCGTGCTGCTGCAGATCGTGCCGTACGGCCGGCTCGATAGCATCGCGCATACGGACTTCGGCGAGCCGGCGCGAGACATGGGGCTCCGGTACATC                                                                                                                                                                                                                                                                             ]


>consensus_6221#0 AAGTAGTACCAAGTACCAACTACCAAGTTCCAATATTAATTCGATTCTTATGTTGAGGCG CGGCCAAACTGCCGCGGGATCATCCTTCTCCCACCGGAGACTCCCGAGATGAGGCGAGGG GAATCGAAGGCGGCGACGAGGGGCGCAAATCGATCGTCGTCGTCGTCGTCGTGGAAGAGC AGATATATTGGATATGGCTTAGTTCTTGGCTTCGTGTTGATGCTGCTCTACTTGATGGTC AATGCGCAGTTCAGCAACAGCCCAAATGCTTATTTAGGCCCAGCAACAACTAGTAAAACT GAATCGATTCCTGCTACAACATATCAAGGGAATCAAGCATGGCAAGATGGGAGCAGAGGA CTGGAGGAAGGCCACAGGGAGGAGGTAGCTAGCACACAACGATCAACAGGCCAACGTCAA GAGAAAGATGACGAAAGCGAGAAGCAACGAACAGAGAAAAATTCAATCGAGGAACAATTA GGCAACGACAGGAGCTCTAACTACTGGGAGGAAGGACGCCAATCCGAGAAGAAGGATACG ATAGAATTCAGTGAATTCGGAGGAGGAACGGACGACTTCAACAATGTTGCCAACACCAAG CCGATCTGCGACACGTCGTTCGGCAAGTACGACATCTGCGTGCTCGACGGCGACACGCGA GCGCAGGGAGGCGGCGGCGCCGGCGCCGCCGTGGTCACCCTGGTCTCGCCGCGCGCGGCG CCGCGGGAGTGGAAGATAAAGCCCTACTCCCGGAAGTACCTCGACGGCCTCAAACCCGTC ACGGTGAGGTCCGTCCCCAACCCGGAGGACGCCCCGCCGTGCACGACGCGGCTGAACGTC CCGGCGATGGTGATCGAGCTCGGCGGGCTCACCGGCAACTACTGGCACGACTTCACCGAC GTGCTCGTCCCGCTCTTCATCGGCGCGCGTCGCTTCGGCGGCGAGGTCCAGCTCCTCGTC GTCAACCTGCTGCCCTTCTGGGTGGACAAGTACCGGAGGATCTTCAGCCAGATCTCGCGG CACGACATCGTCGACCTGGAGAAGGACGACGACCGCGGCGTCGTCCGCTGTTACCCGCAC GTGGTGGTCGGCTATGGCAGCCGCAAGGAGTTCACCATCGACCCCTCCCTCGACGACACC GGCGGCGGCTACACCATGGTCAACTTCACCGAGTTCTTGAGGCAATCCTACTCGCTCCCG CGTGACCGGCCGATCAAGCTCGGTACCAACCACGGTGCACGGCCGCGGATGATGATCCTG GAGCGGACCAACAGCCGGAAGCTGATGAACCTCCCGGAGGTCGCCGCGGCCGCGCGAGCG GCGGGGTTCGAGGTGACCGTCGCCGGCGGCCGTCCGACGAGCACCTACGACGAGTTCGCC CGGGAGGTGAACTCGTACGACGTGATGGTGGGCGTGCACGGCGCCGGGCTGACCAACTGC GTGTTCCTCCCCACGGGGGCCGTGCTGCTGCAGATCGTGCCGTACGGCCGGCTCGAGAGC ATCGCGCAGACGGACTTCGGCGAGCCGGCGCGAGACATGGGGCTCCGGTACATCGAGTAC GACATCGCCGCCGACGAGAGCTCGCTGATGGACGTGTTCGGCAAGGACCACCCCATGATC AAGGACCCCGTCGCCGTGCACTTGAGCGGGTGGGGAAACGTGGCCGAGTGGTACCTCGGG AAGCAGGACGTGCGGGTCAACATTGAGCGGTTTAGGCCGTTTCTGACGCAGGCGTTGGAG CACCTGCAGTAGCGATCCTTTTTCTCGATGAACAAGCAAAAATGTATATGCATAACACGA CGGTGCGTTTTCCTATTCTTATT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)