These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6224#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 3641 fasta sequence [TCTTTCTCTCTCTCTCGGCCTTAATCGCATATAACGATAATTGATATGGATAATTGGATTGGATTATATGCAGCTGTATCACAAATTCACAATCCCACAATCTCATTTTCTTTTTTACTCGGTGAACCACTAAAACAGTGTGAAATGGGCAGCTGTTTGGCGTTTTCAAGAAAGAAAATATTGTTAAACTGACCTTTTTTGACAGTCATCTTCAGTTTTTTTTTTTTGTTTAAGCCCTTCCTCTCCTCACTCACACTGCCCTGTTCATCTCTTTCTTTTTTATTCGATTCCTCTATTCCATTCCACACGCATTGCCGCTGGTAGTAGAAGTATAGTATCTCTCCGCGACCGAAGATTTTAAAAAGGAAGCAATTTGCCTCTTTTTTTTTTTTGGCGCACCTCGATTAGTAGTAGATTTTAGAGGCGAATGTGAGCGGTCAAATCCTTCTTTTTTAGCTTGTGCGCGTTGTGTTTTGTGCTCTCCTTTTGTCAGTTCCTGAGGCGCTCTCTCCTGTGCCTTTGTGTTTAGCGTGCGTGACCGCGAGCGAGGTCGAGGAGTGAGAGGGAGTGAGGCGGCGGCGGCGGCGGCCATGGCGCAGCAGCAGCAGCAGCAGAGTGCGTGGGAAGCGGAGAAGATGTTGGACGTGTACATCCATGATTATCTTTTGAAGAGGAACCTGCAGAGCACTGCCAAGGCATTCCAAGCAGAAGGCAGCGTGTCTTCCGATCCTGTTGCAATTGATGCCCCAGGGGGTTTCCTCTTGGAGTGGTGGTCTGTCTTCTGGGACATCTTCATTGCAAGGACGAACGAGAAGCACTCTGATGTTGCTGCTTCGTACATTG------AGTCAATTAAAGCTCGAGAGCAGCAGCCATCACAGCTGCAGCAGCAAGAGGCTCATTCCCAGCAGTCATCACAGCAGATCCAAATGCAACAACTCCTACTACAGAGGCATGCACAGCAGCAGCAGCAGCAGCAGAGTCAGCAACAACCACAGCAACAACGCCGCCAGCAGAAGCAACAACAGCGTAGTGAAAGCAGTCATTTGCCGACAAGTGCACATAATGGTTTGGTTTCTGCTGATCCTCCAACACGACAAAGCACTTCAGCTGCAAGTTCTTTGTCTGCAAAGATGTACGAGGAGAGGGTGAAGAATTCTGTTCAAAGGGACACCTTAGATGAAGCACCTGCAAAGCAAAGGTTTACAGAAAATATTGGACAACTGCTGGAATCAAACTCATCATTTATGCTGAAGTCCGTTGCAATAACAGCTCAGGCTTCAGGGCAAATTTTCCATGGATCAACTGGTGGCGTGTCAGGTACTTTGCAACAGGTTCAGGCCCGGAACCAACAACTCCAGGCATCAACACAGGAAATAAAGGTAGACACAAATGCTGCTGTACACATGAGAGCTGCAGGGGCAGATGGATCATTAATTGGAGTACCAGGCGCTAACCCAGCAGGGAACAATTTGACGTTGAAAGGGTGGCCTCTTACTGGCTTAGACCAGCTTAGATCTGGGTTTCTCCAACAGAAATCTTTTATGCAGTCTCCCCAACCATTGCACCATCTACAATTTCTCACTCCACAACAACAGCAGCTTCTGCTTCAAGCACAACAAAATATGACATCTTCACCTGGAGAGATGGACAGCAGAAGGCTTCGGATGCTTTTGAGTAGCCGAAACATTGTTCCTGGGAGGGATGGTCAATCAAATGCCTACACGGAAGTTATTCCTAGTGTGGGCCCTTCATTGCAAAATATGTGCTCACCTGTGCAGCGCATGGAGACAGATATGCTGATGAAGAAGATAGCAGCTATACAGCAGCACCAGCAAAGCAGCAATCAGCAACAGCTCCTTCAGCATTCTTTACTTAGCCAGCAACCACCAATCTCTAATCACCTTCCAGGCCAGCAGGAAAAAATGGGAGCTGGAAGTGTTACTATTGATGGAAGCCTGTCTAATTCATTCCGTGGAAGTGAACAGGTTTCCAAGAATCAAAATGGGCGAAAACGCAAACAGCCAATCTCATCGTCTGGTCCAGCCAATAGTTCTGGCACTGGAAACACCGCGGTCCCCTCCTCAGAACCCTCAACTCCTTCATCGCAAAGCCCAGGAGACACAATTTCAATGCCCTCGCTGCACCACAATGCTAGCTTATCAAAGGCTTTAGTTGTTTACGGTACCAGTACAGCAGGGACAATGGGATCACCATCAAATCAACTTGCTGACATGGATCGTTTTGTGGAGGATGGCTGCTTGGAAGATCATGTGGATTCGTTCCTGTCGCATGATGATGCAGATCGAAGAGATGGCAGTCGTATGGAATCTACTAAAGGATTCATCTTCCGAGAGGTCTCTTCTGTACAAGCAAGCACGAACAAGGTTGTATGCTGCCACTTCTCATCAGATGGAAAGCTACTTGCTACTGGGGGTCATGATAAGAAGGTGGTATTGTGGCATGCTGAAACTTTAAAACAGAAGTCAGTATTGGAGGAACATTCTCTTTTGATAACTGATGTACGATTCAGTCCAAGCATTCCACGCCTTGCTACCTCCTCATTTGATAAAACTGTCAGGGTCTGGGATGCTGACAATCAAGGCTATTCAATTCGAACGTTCACTGGGCACTCAGCATCTGTTATGTCACTGGATTTCCACCCAAACAAGGATGACCTCATTTGTTCTTGTGATGGGGATAATGAAATTCGATTCTGGAGTATCAACAATGGAAACATCGTCCGGATATTTAAGGGAGGATCAAGCCAGCTGAGATTTCAACCACGTCATGGGGGATATCTTGCAGTAGCTTCGGAGAATGCTGTCTCTATACTTGATGTGGAGACTCAAGCTTGCCTTAGGAGATTTGAGGGCCACACAAAGCATGTCGATTCAGTATGCTGGGATCCCAGTGGCGAATATGTTGTATCTGTCAGTGAAGACACGGTGAAGGTGTGGTCTGTGAATGCTGGGAGCGATGATCGCTGCGTGCAAGAGCTTAGCTGTACCGGGAGCAAGTTTCACTCGTGTGCTTTCCACCCTTCATATTCATCTATGCTTATCATTGGTTGTTACCAGTCTCTTGAGCTGTGGGACATGTCGGAGAACAGAACGATGACGCTCGCAGCTCATGACAGCCTCATCACAGCCCTGGCGTCGTCAAGCTCCGGTTTGGTCGCTTCCACGAGCCACGACAAGTTCGTCAAGCTGTGGAAATGATGTGCTTTCAAGCTAGCCGCGCCCTCTAACCCTCTTCTAAGGATGGGCCTTTTTCTTCCTCATTTTTTGGTCACACCATCAGCTCTGAAGAGCTATTGTGTGATGATGGTATAAACACTCTATATGGTATAATATCCCCCACAAAGTAGCTGGCTACTGAATGACTGATGAAAATATTGCTATCCTAGTATACCTTTTGCTGACCCTGGGAAAGTAGCATTTTGTACAGAACATGAACTATGCTTTAGTATTAATCATAGTCTATCTGAACTACTGAAGTGTTTATGGTCTGAATTCTAAGAAGTTATTCTGCTGCATCTCTGCTATGAATATGAAGAATGTGATGAATGTGGCATTCTCGTAGGAATTTCAAGGGACTTTTTTTGTAAGAAGTATGCTCAATTCCAGCAAGAAATTGGAAAT] [+] EMBL AK072687 [TCTTTCTCTCTCTCTCGGCCTTAATCGCATATAACGATAATTGATATGGATAATTGGATTGGATTATATGCAGCTGTATCACAAATTCACAATCCCACAATCTCATTTTCTTTTTTACTCGGTGAACCACTAAAACAGTGTGAAATGGGCAGCTGTTTGGCGTTTTCAAGAAAGAAAATATTGTTAAACTGACCTTTTTTGACAGTCATCTTCAGTTTTTTTTTTTTGTTTAAGCCCTTCCTCTCCTCACTCACACTGCCCTGTTCATCTCTTTCTTTTTTATTCGATTCCTCTATTCCATTCCACACGCATTGCCGCTGGTAGTAGAAGTATAGTATCTCTCCGCGACCGAAGATTTTAAAAAGGAAGCAATTTGCCTCTTTTTTTTTTTTGGCGCACCTCGATTAGTAGTAGATTTTAGAGGCGAATGTGAGCGGTCAAATCCTTCTTTTTTAGCTTGTGCGCGTTGTGTTTTGTGCTCTCCTTTTGTCAGTTCCTGAGGCGCTCTCTCCTGTGCCTTTGTGTTTAGCGTGCGTGACCGCGAGCGAGGTCGAGGAGTGAGAGGGAGTGAGGCGGCGGCGGCGGCGGCCATGGCGCAGCAGCAGCAGCAGCAGAGTGCGTGGGAAGCGGAGAAGATGTTGGACGTGTACATCCATGATTATCTTTTGAAGAGGAACCTGCAGAGCACTGCCAAGGCATTCCAAGCAGAAGGCAGCGTGTCTTCCGATCCTGTTGCAATTGATGCCCCAGGGGGTTTCCTCTTGGAGTGGTGGTCTGTCTTCTGGGACATCTTCATTGCAAGGACGAACGAGAAGCACTCTGATGTTGCTGCTTCGTACATTG AGTCAATTAAAGCTCGAGAGCAGCAGCCATCACAGCTGCAGCAGCAAGAGGCTCATTCCCAGCAGTCATCACAGCAGATCCAAATGCAACAACTCCTACTACAGAGGCATGCACAGCAGCAGCAGCAGCAGCAGAGTCAGCAACAACCACAGCAACAACGCCGCCAGCAGAAGCAACAACAGCGTAGTGAAAGCAGTCATTTGCCGACAAGTGCACATAATGGTTTGGTTTCTGCTGATCCTCCAACACGACAAAGCACTTCAGCTGCAAGTTCTTTGTCTGCAAAGATGTACGAGGAGAGGGTGAAGAATTCTGTTCAAAGGGACACCTTAGATGAAGCACCTGCAAAGCAAAGGTTTACAGAAAATATTGGACAACTGCTGGAATCAAACTCATCATTTATGCTGAAGTCCGTTGCAATAACAGCTCAGGCTTCAGGGCAAATTTTCCATGGATCAACTGGTGGCGTGTCAGGTACTTTGCAACAGGTTCAGGCCCGGAACCAACAACTCCAGGCATCAACACAGGAAATAAAGGTAGACACAAATGCTGCTGTACACATGAGAGCTGCAGGGGCAGATGGATCATTAATTGGAGTACCAGGCGCTAACCCAGCAGGGAACAATTTGACGTTGAAAGGGTGGCCTCTTACTGGCTTAGACCAGCTTAGATCTGGGTTTCTCCAACAGAAATCTTTTATGCAGTCTCCCCAACCATTGCACCATCTACAATTTCTCACTCCACAACAACAGCAGCTTCTGCTTCAAGCACAACAAAATATGACATCTTCACCTGGAGAGATGGACAGCAGAAGGCTTCGGATGCTTTTGAGTAGCCGAAACATTGTTCCTGGGAGGGATGGTCAATCAAATGCCTACACGGAAGTTATTCCTAGTGTGGGCCCTTCATTGCAAAATATGTGCTCACCTGTGCAGCGCATGGAGACAGATATGCTGATGAAGAAGATAGCAGCTATACAGCAGCACCAGCAAAGCAGCAATCAGCAACAGCTCCTTCAGCATTCTTTACTTAGCCAGCAACCACCAATCTCTAATCACCTTCCAGGCCAGCAGGAAAAAATGGGAGCTGGAAGTGTTACTATTGATGGAAGCCTGTCTAATTCATTCCGTGGAAGTGAACAGGTTTCCAAGAATCAAAATGGGCGAAAACGCAAACAGCCAATCTCATCGTCTGGTCCAGCCAATAGTTCTGGCACTGGAAACACCGCGGTCCCCTCCTCAGAACCCTCAACTCCTTCATCGCAAAGCCCAGGAGACACAATTTCAATGCCCTCGCTGCACCACAATGCTAGCTTATCAAAGGCTTTAGTTGTTTACGGTACCAGTACAGCAGGGACAATGGGATCACCATCAAATCAACTTGCTGACATGGATCGTTTTGTGGAGGATGGCTGCTTGGAAGATCATGTGGATTCGTTCCTGTCGCATGATGATGCAGATCGAAGAGATGGCAGTCGTATGGAATCTACTAAAGGATTCATCTTCCGAGAGGTCTCTTCTGTACAAGCAAGCACGAACAAGGTTGTATGCTGCCACTTCTCATCAGATGGAAAGCTACTTGCTACTGGGGGTCATGATAAGAAGGTGGTATTGTGGCATGCTGAAACTTTAAAACAGAAGTCAGTATTGGAGGAACATTCTCTTTTGATAACTGATGTACGATTCAGTCCAAGCATTCCACGCCTTGCTACCTCCTCATTTGATAAAACTGTCAGGGTCTGGGATGCTGACAATCAAGGCTATTCAATTCGAACGTTCACTGGGCACTCAGCATCTGTTATGTCACTGGATTTCCACCCAAACAAGGATGACCTCATTTGTTCTTGTGATGGGGATAATGAAATTCGATTCTGGAGTATCAACAATGGAAACATCGTCCGGATATTTAAGGGAGGATCAAGCCAGCTGAGATTTCAACCACGTCATGGGGGATATCTTGCAGTAGCTTCGGAGAATGCTGTCTCTATACTTGATGTGGAGACTCAAGCTTGCCTTAGGAGATTTGAGGGCCACACAAAGCATGTCGATTCAGTATGCTGGGATCCCAGTGGCGAATATGTTGTATCTGTCAGTGAAGACACGGTGAAGGTGTGGTCTGTGAATGCTGGGAGCGATGATCGCTGCGTGCAAGAGCTTAGCTGTACCGGGAGCAAGTTTCACTCGTGTGCTTTCCACCCTTCATATTCATCTATGCTTATCATTGGTTGTTACCAGTCTCTTGAGCTGTGGGACATGTCGGAGAACAGAACGATGACGCTCGCAGCTCATGACAGCCTCATCACAGCCCTGGCGTCGTCAAGCTCCGGTTTGGTCGCTTCCACGAGCCACGACAAGTTCGTCAAGCTGTGGAAATGATGTGCTTTCAAGCTAGCCGCGCCCTCTAACCCTCTTCTAAGGATGGGCCTTTTTCTTCCTCATTTTTTGGTCACACCATCAGCTCTGAAGAGCTATTGTGTGATGATGGTATAAACACTCTATATGGTATAATATCCCCCACAAAGTAGCTGGCTACTGAATGACTGATGAAAATATTGCTATCCTAGTATACCTTTTGCTGACCCTGGGAAAGTAGCATTTTGTACAGAACATGAACTATGCTTTAGTATTAATCATAGTCTA ] [+] EMBL AK122062 [ CGTGCGTGACCGCGAGCGAGGTCGAGGAGTGAGAGGGAGTGAGGCGGCGGCGGCGGCGGCCATGGCGCAGCAGCAGCAGCAGCAGAGTGCGTGGGAAGCGGAGAAGATGTTGGACGTGTACATCCATGATTATCTTTTGAAGAGGAACCTGCAGAGCACTGCCAAGGCATTCCAAGCAGAAGGCAGCGTGTCTTCCGATCCTGTTGCAATTGATGCCCCAGGGGGTTTCCTCTTGGAGTGGTGGTCTGTCTTCTGGGACATCTTCATTGCAAGGACGAACGAGAAGCACTCTGATGTTGCTGCTTCGTACATTGAGACACAGTCAATTAAAGCTCGAGAGCAGCAGCCATCACAGCTGCAGCAGCAAGAGGCTCATTCCCAGCAGTCATCACAGCAGATCCAAATGCAACAACTCCTACTACAGAGGCATGCACAGCAGCAGCAGCAGCAGCAGAGTCAGCAACAACCACAGCAACAACGCCGCCAGCAGAAGCAACAACAGCGTAGTGAAAGCAGTCATTTGCCGACAAGTGCACATAATGGTTTGGTTTCTGCTGATCCTCCAACACGACAAAGCACTTCAGCTGCAAGTTCTTTGTCTGCAAAGATGTACGAGGAGAGGGTGAAGAATTCTGTTCAAAGGGACACCTTAGATGAAGCACCTGCAAAGCAAAGGTTTACAGAAAATATTGGACAACTGCTGGAATCAAACTCATCATCTATGCTGAAGTCCGTTGCAATAACAGCTCAGGCTTCAGGGCAAATTTTCCATGGATCAACTGGTGGCGTGTCAGGTACTTTGCAACAGGTTCAGGCCCGGAACCAACAACTCCAGGCATCAACACAGGAAATAAAGGTAGACACAAATGCTGCTGTACACATGAGAGCTGCAGGGGCAGATGGATCATTAATTGGAGTACCAGGCGCTAACCCAGCAGGGAACAATTTGACGTTGAAAGGGTGGCCTCTTACTGGCTTAGACCAGCTTAGATCTGGGTTTCTCCAACAGAAATCTTTTATGCAGTCTCCCCAACCATTGCACCATCTACAATTTCTCACTCCACAACAACAGCAGCTTCTGCTTCAAGCACAACAAAATATGACATCTTCACCTGGAGAGATGGACAGCAGAAGGCTTCGGATGCTTTTGAGTAGCCGAAACATTGTTCCTGGGAGGGATGGTCAATCAAATGCCTACACGGAAGTTATTCCTAGTGTTGGCCCTTCATTGCAAAATATGTGCTCACCTGTGCAGCGCATGGAGACAGATATGCTGATGAAGAAGATAGCAGCTATACAGCAGCACCAGCAAAGCAGCAATCAGCAACAGCTCCTTCAGCATTCTTTACTTAGCCAGCAACCACCAATCTCTAATCACCTTCCAGGCCAGCAGGAAAAAATGGGAGCTGGAAGTGTTACTATTGATGGAAGCCTGTCTAATTCATTCCGTGGAAGTGAACAGGTTTCCAAGAATCAAAATGGGCGAAAACGCAAACAGCCAATCTCATCGTCTGGTCCAGCCAATAGTTCTGGCACTGGAAACACCGCGGTCCCCTCCTCAGAACCCTCAACTCCTTCATCGCAAAGCCCAGGAGACACAATTTCAATGCCCTCGCTGCACCACAATGCTAGCTTATCAAAGGCTTTAGTTGTTTACGGTACCAGTACAGCAGGGACAATGGGATCACCATCAAATCAACTTGCTGACATGGATCGTTTTGTGGAGGATGGCTGCTTGGAAGATCATGTGGATTCGTTCCTGTCGCATGATGATGCAGATCGAAGAGATGGCAGTCGTATGGAATCTACTAAAGGATTCATCTTCCGAGAGGTCTCTTCTGTACAAGCAAGCACGAACAAGGTTGTATGCTGCCACTTCTCATCAGATGGAAAGCTACTTGCTACTGGGGGTCATGATAAGAAGGTGGTATTGTGGCATGCTGAAACTTTAAAACAGAAGTCAGTATTGGAGGAACATTCTCTTTTGATAACTGATGTACGATTCAGTCCAAGCATTCCACGCCTTGCTACCTCCTCATTTGATAAAACTGTCAGGGTCTGGGATGCTGACAATCAAGGCTATTCAATTCGAACGTTCACTGGGCACTCAGCATCTGTTATGTCACTGGATTTCCACCCAAACAAGGATGACCTCATTTGTTCTTGTGATGGGGATAATGAAATTCGATTCTGGAGTATCAACAATGGAAACATCGTCCGGATATTTAAGGGAGGATCAAGCCAGCTGAGATTTCAACCACGTCATGGGGGATATCTTGCAGTAGCTTCGGAGAATGCTGTCTCTATACTTGATGTGGAGACTCAAGCTTGCCTTAGGAGATTTGAGGGCCACACAAAGCATGTCGATTCAGTATGCTGGGATCCCAGTGGCGAATATGTTGTATCTGTCAGTGAAGACACGGTGAAGGTGTGGTCTGTGAATGCTGGGAGCGATGATCGCTGCGTGCAAGAGCTTAGCTGTACCGGGAGCAAGTTTCACTCGTGTGCTTTCCACCCTTCATATTCATCTATGCTTATCATTGGTTGTTACCAGTCTCTTGAGCTGTGGGACATGTCGGAGAACAGAACGATGACGCTCGCAGCTCATGACAGCCTCATCACAGCCCTGGCGTCGTCAAGCTCCGGTTTGGTCGCTTCCACGAGCCACGACAAGTTCGTCAAGCTGTGGAAATGATGTGCTTTCAAGCTAGCCGCGCCCTCTAACCCTCTTCTAAGGATGGGCCTTTTTCTTCCTCATTTTTTGGTCACACCATCAGCTCTGAAGAGCTATTGTGTGATGATGGTATAAACACTCTATATGGTATAATATCCCCCACAAAGTAGCTGGCTACTGAATGACTGATGAAAATATTGCTATCCTAGTATACCTTTTGCTGACCCTGGGAAAGTAGCATTTTGTACAGAACATGAACTATGCTTTAGTATTAATCATAGTCTATCTGAACTACTGAAGTGTTTATGGTCTGAATTCTAAGAAGTTATTCTGCTGCATCTCTGCTATGAATATGAAGAATGTGATGAATGTGGCATTCTCGTAGGAATTTCAAGGGACTTTTTTTGTAAGAAGTATGCTCAATTCCAGCAAGAAATTGGAAAT] consensusID : consensus_6224#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence [GAGATNTGAGGGCCACACAAAGCATGTCGATTCAGTATGCTGGGATCCCAGTGGCGAATATGTTGTATCTGTCAGTGAAGACACGGTGAAGGTGTGGTCTGTGAATGCTGGGAGCGATGATCGCTGCGTGCAAGAGCTTAGCTGTACCGGGAGCAAGTTTCACTCGTGTGCTTTCCACCCTTCATATTCATCTATGCTTATCATTGGTTGTTACCAGTCTCTTGAGCTGTGGGACATGTCGGAGAACAGAACGATGACGCTCGCAGCTCATGACAGCCTCATCACAGCCCTGGGGTCGTCAAGCTCCGGTTTGGTCGCTTCCACGAGCCACGACAAGTTCGTCAAGCTGTGGAAATGATGTGCTTTCAAGCTAGCCGCGCCCTCTAACCCTTTTCTAAGGATGGGCCTTTTTCTTCCTCATTTTTTGGTCACACCATCAGCTCTGAAGAGCTATTGTGTGATGATGGTATAAACACTCTATGTGGTATAATATCCCCCACAAAGTAGCTGGCTACTGAATGACTGATGAAAATATTGCTATCCTAGTATACCTTTTGCTGACCCTGGGAAAGTAGCATTTTGTACAGAACATGAACTATGCTTTGGTATTAATCATAGTCTATCTGAACTACTGAAGTGTTTATGGTCTGAATTCTAAGAAGTTATTTTGCTGCAAAAAAAAAAAAAA] [-] EMBL CA760204 [GAGATNTGAGGGCCACACAAAGCATGTCGATTCAGTATGCTGGGATCCCAGTGGCGAATATGTTGTATCTGTCAGTGAAGACACGGTGAAGGTGTGGTCTGTGAATGCTGGGAGCGATGATCGCTGCGTGCAAGAGCTTAGCTGTACCGGGAGCAAGTTTCACTCGTGTGCTTTCCACCCTTCATATTCATCTATGCTTATCATTGGTTGTTACCAGTCTCTTGAGCTGTGGGACATGTCGGAGAACAGAACGATGACGCTCGCAGCTCATGACAGCCTCATCACAGCCCTGGGGTCGTCAAGCTCCGGTTTGGTCGCTTCCACGAGCCACGACAAGTTCGTCAAGCTGTGGAAATGATGTGCTTTCAAGCTAGCCGCGCCCTCTAACCCTTTTCTAAGGATGGGCCTTTTTCTTCCTCATTTTTTGGTCACACCATCAGCTCTGAAGAGCTATTGTGTGATGATGGTATAAACACTCTATGTGGTATAATATCCCCCACAAAGTAGCTGGCTACTGAATGACTGATGAAAATATTGCTATCCTAGTATACCTTTTGCTGACCCTGGGAAAGTAGCATTTTGTACAGAACATGAACTATGCTTTGGTATTAATCATAGTCTATCTGAACTACTGAAGTGTTTATGGTCTGAATTCTAAGAAGTTATTTTGCTGCAAAAAAAAAAAAAA] consensusID : consensus_6224#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence [AGCACGAACAAGGTTGTATGCTGCCACTTCTCATCAGATGGAAAGCTACTTGCTACTGGGGGTCATGATAAGAAGGTGGTATTGTGGCATGCTGAAACTTTAAAACAGACGTCAGTATTGGAGGNACATTCTCTTTTGATAACTGATGTACGATTCAGTCCAAGCATTCCACGCCTGGCTACCTACTCATTTGATAAAACTGTCAGGGTCTGGGATGCTGNCAATCAAGGNTATTCAAATTCGNACGTTCACTGGGCACTCAGCATCTGTTATGTCACTGGATTTTCCACCCAAANCAAGNGATTGNCCTCCAATTCGGTTCTTTTATNATGGGGGGTTAATTGAAATTTCGATTTCTCGGGGGTATCCAACAATTGGGTACCATTGTCCCGGGCTTNTTTACATGGGGANGGNTCAACTCCANCCTTGAAGCTTTTACCCCNTGG] [+] EMBL D43189 [AGCACGAACAAGGTTGTATGCTGCCACTTCTCATCAGATGGAAAGCTACTTGCTACTGGGGGTCATGATAAGAAGGTGGTATTGTGGCATGCTGAAACTTTAAAACAGACGTCAGTATTGGAGGNACATTCTCTTTTGATAACTGATGTACGATTCAGTCCAAGCATTCCACGCCTGGCTACCTACTCATTTGATAAAACTGTCAGGGTCTGGGATGCTGNCAATCAAGGNTATTCAAATTCGNACGTTCACTGGGCACTCAGCATCTGTTATGTCACTGGATTTTCCACCCAAANCAAGNGATTGNCCTCCAATTCGGTTCTTTTATNATGGGGGGTTAATTGAAATTTCGATTTCTCGGGGGTATCCAACAATTGGGTACCATTGTCCCGGGCTTNTTTACATGGGGANGGNTCAACTCCANCCTTGAAGCTTTTACCCCNTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6224#0 TCTTTCTCTCTCTCTCGGCCTTAATCGCATATAACGATAATTGATATGGATAATTGGATT 60 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 GGATTATATGCAGCTGTATCACAAATTCACAATCCCACAATCTCATTTTCTTTTTTACTC 120 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 GGTGAACCACTAAAACAGTGTGAAATGGGCAGCTGTTTGGCGTTTTCAAGAAAGAAAATA 180 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 TTGTTAAACTGACCTTTTTTGACAGTCATCTTCAGTTTTTTTTTTTTGTTTAAGCCCTTC 240 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 CTCTCCTCACTCACACTGCCCTGTTCATCTCTTTCTTTTTTATTCGATTCCTCTATTCCA 300 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 TTCCACACGCATTGCCGCTGGTAGTAGAAGTATAGTATCTCTCCGCGACCGAAGATTTTA 360 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 AAAAGGAAGCAATTTGCCTCTTTTTTTTTTTTGGCGCACCTCGATTAGTAGTAGATTTTA 420 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 GAGGCGAATGTGAGCGGTCAAATCCTTCTTTTTTAGCTTGTGCGCGTTGTGTTTTGTGCT 480 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 CTCCTTTTGTCAGTTCCTGAGGCGCTCTCTCCTGTGCCTTTGTGTTTAGCGTGCGTGACC 540 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 GCGAGCGAGGTCGAGGAGTGAGAGGGAGTGAGGCGGCGGCGGCGGCGGCCATGGCGCAGC 600 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 AGCAGCAGCAGCAGAGTGCGTGGGAAGCGGAGAAGATGTTGGACGTGTACATCCATGATT 660 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 ATCTTTTGAAGAGGAACCTGCAGAGCACTGCCAAGGCATTCCAAGCAGAAGGCAGCGTGT 720 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 CTTCCGATCCTGTTGCAATTGATGCCCCAGGGGGTTTCCTCTTGGAGTGGTGGTCTGTCT 780 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 TCTGGGACATCTTCATTGCAAGGACGAACGAGAAGCACTCTGATGTTGCTGCTTCGTACA 840 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 TTGAGTCAATTAAAGCTCGAGAGCAGCAGCCATCACAGCTGCAGCAGCAAGAGGCTCATT 900 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 CCCAGCAGTCATCACAGCAGATCCAAATGCAACAACTCCTACTACAGAGGCATGCACAGC 960 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 AGCAGCAGCAGCAGCAGAGTCAGCAACAACCACAGCAACAACGCCGCCAGCAGAAGCAAC 1020 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 AACAGCGTAGTGAAAGCAGTCATTTGCCGACAAGTGCACATAATGGTTTGGTTTCTGCTG 1080 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 ATCCTCCAACACGACAAAGCACTTCAGCTGCAAGTTCTTTGTCTGCAAAGATGTACGAGG 1140 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 AGAGGGTGAAGAATTCTGTTCAAAGGGACACCTTAGATGAAGCACCTGCAAAGCAAAGGT 1200 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 TTACAGAAAATATTGGACAACTGCTGGAATCAAACTCATCATTTATGCTGAAGTCCGTTG 1260 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 CAATAACAGCTCAGGCTTCAGGGCAAATTTTCCATGGATCAACTGGTGGCGTGTCAGGTA 1320 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 CTTTGCAACAGGTTCAGGCCCGGAACCAACAACTCCAGGCATCAACACAGGAAATAAAGG 1380 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 TAGACACAAATGCTGCTGTACACATGAGAGCTGCAGGGGCAGATGGATCATTAATTGGAG 1440 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 TACCAGGCGCTAACCCAGCAGGGAACAATTTGACGTTGAAAGGGTGGCCTCTTACTGGCT 1500 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 TAGACCAGCTTAGATCTGGGTTTCTCCAACAGAAATCTTTTATGCAGTCTCCCCAACCAT 1560 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 TGCACCATCTACAATTTCTCACTCCACAACAACAGCAGCTTCTGCTTCAAGCACAACAAA 1620 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 ATATGACATCTTCACCTGGAGAGATGGACAGCAGAAGGCTTCGGATGCTTTTGAGTAGCC 1680 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 GAAACATTGTTCCTGGGAGGGATGGTCAATCAAATGCCTACACGGAAGTTATTCCTAGTG 1740 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 TGGGCCCTTCATTGCAAAATATGTGCTCACCTGTGCAGCGCATGGAGACAGATATGCTGA 1800 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 TGAAGAAGATAGCAGCTATACAGCAGCACCAGCAAAGCAGCAATCAGCAACAGCTCCTTC 1860 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 AGCATTCTTTACTTAGCCAGCAACCACCAATCTCTAATCACCTTCCAGGCCAGCAGGAAA 1920 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 AAATGGGAGCTGGAAGTGTTACTATTGATGGAAGCCTGTCTAATTCATTCCGTGGAAGTG 1980 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 AACAGGTTTCCAAGAATCAAAATGGGCGAAAACGCAAACAGCCAATCTCATCGTCTGGTC 2040 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 CAGCCAATAGTTCTGGCACTGGAAACACCGCGGTCCCCTCCTCAGAACCCTCAACTCCTT 2100 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 CATCGCAAAGCCCAGGAGACACAATTTCAATGCCCTCGCTGCACCACAATGCTAGCTTAT 2160 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 CAAAGGCTTTAGTTGTTTACGGTACCAGTACAGCAGGGACAATGGGATCACCATCAAATC 2220 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 AACTTGCTGACATGGATCGTTTTGTGGAGGATGGCTGCTTGGAAGATCATGTGGATTCGT 2280 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 TCCTGTCGCATGATGATGCAGATCGAAGAGATGGCAGTCGTATGGAATCTACTAAAGGAT 2340 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 TCATCTTCCGAGAGGTCTCTTCTGTACAAGCAAGCACGAACAAGGTTGTATGCTGCCACT 2400 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 TCTCATCAGATGGAAAGCTACTTGCTACTGGGGGTCATGATAAGAAGGTGGTATTGTGGC 2460 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 ATGCTGAAACTTTAAAACAGAAGTCAGTATTGGAGGAACATTCTCTTTTGATAACTGATG 2520 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 TACGATTCAGTCCAAGCATTCCACGCCTTGCTACCTCCTCATTTGATAAAACTGTCAGGG 2580 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 TCTGGGATGCTGACAATCAAGGCTATTCAATTCGAACGTTCACTGGGCACTCAGCATCTG 2640 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 TTATGTCACTGGATTTCCACCCAAACAAGGATGACCTCATTTGTTCTTGTGATGGGGATA 2700 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 ATGAAATTCGATTCTGGAGTATCAACAATGGAAACATCGTCCGGATATTTAAGGGAGGAT 2760 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 CAAGCCAGCTGAGATTTCAACCACGTCATGGGGGATATCTTGCAGTAGCTTCGGAGAATG 2820 consensus_6224#1 ------------------------------------------------------------ consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 CTGTCTCTATACTTGATGTGGAGACTCAAGCTTGCCTTAGGAGATTTGAGGGCCACACAA 2880 consensus_6224#1 ----------------------------------------GAGATNTGAGGGCCACACAA 20 consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 AGCATGT-CGATTCAGTATGCTGGGATCCCAGTGGCGAATATGTTG-TATCTGTCAGTGA 2938 consensus_6224#1 AGCATGT-CGATTCAGTATGCTGGGATCCCAGTGGCGAATATGTTG-TATCTGTCAGTGA 78 consensus_6224#2 AGCACGAACAAGGTTGTATGCTGCCACTTCT-CATCAGATGGAAAGCTACTTGCTACTGG 59 **** * * * ******** * * * ** * ** ** * ** consensus_6224#0 AGA-CACGGTGAAGGTGTGGT-CTGTGA-ATGCTGGGAGCGATGATCGCTGCGTGCAAGA 2995 consensus_6224#1 AGA-CACGGTGAAGGTGTGGT-CTGTGA-ATGCTGGGAGCGATGATCGCTGCGTGCAAGA 135 consensus_6224#2 GGGTCATGATAAGAAGGTGGTATTGTGGCATGCTGAAA----------CTTTAAAACAGA 109 * ** * * * ***** **** ****** * ** *** consensus_6224#0 GCTTAGCTGTACCGGGAGCAAGTTTCACTCGTGTGCTTTCCACCCTTCATATTCATCTAT 3055 consensus_6224#1 GCTTAGCTGTACCGGGAGCAAGTTTCACTCGTGTGCTTTCCACCCTTCATATTCATCTAT 195 consensus_6224#2 CGTCAG---TATTGGAGGNACATT---CTCTTTTGATAACTGATGTACGATTCAGTCCAA 163 * ** ** ** * * ** *** * ** * * * * * ** * consensus_6224#0 GCTTATCATTGGTTGTTACC-AGTCTCTTGAGCTGTGGGACATGTCGGAGAACAGAACGA 3114 consensus_6224#1 GCTTATCATTGGTTGTTACC-AGTCTCTTGAGCTGTGGGACATGTCGGAGAACAGAACGA 254 consensus_6224#2 GCATTCCACGCCTGGCTACCTACTCATTTGA----TAAAAC-TGTCAGGGTCTGGGATGC 218 ** * ** * * **** * ** **** * ** **** * * * * * consensus_6224#0 TGACGCTCGCAGCTCATGACAGCCTCATCACAGCCCTGGCGTCGTCAAGCTCCGGTTTGG 3174 consensus_6224#1 TGACGCTCGCAGCTCATGACAGCCTCATCACAGCCCTGGGGTCGTCAAGCTCCGGTTTGG 314 consensus_6224#2 TGNCAATCAAGGNTATTCAAATTCGNAC----GTTCACTGGGCACTCAGCATCTGTTATG 274 ** * ** * * * * * * * * * * * *** * *** * consensus_6224#0 TCGCTTCCACGAGCCACGACAAGTTCGTCAAGCTGTGGAAATGATGTGCTTTCAAGCTAG 3234 consensus_6224#1 TCGCTTCCACGAGCCACGACAAGTTCGTCAAGCTGTGGAAATGATGTGCTTTCAAGCTAG 374 consensus_6224#2 TCACT---------------GGATTTTCCACCCAAANCAAGNGATTGNCCTCCAA----- 314 ** ** ** ** * ** *** * * *** consensus_6224#0 CCGCGCCCTCTAACCCTCTTCTAAGGATGGGCCTTTTTCTTCCTC-ATTTTTTGGTCACA 3293 consensus_6224#1 CCGCGCCCTCTAACCCTTTTCTAAGGATGGGCCTTTTTCTTCCTC-ATTTTTTGGTCACA 433 consensus_6224#2 --------TTCGGTTCTTTTATNATGGGGGGTTAATTGAAATTTCGATTTCTCGGGGGTA 366 * ** ** * * * *** ** ** **** * ** * consensus_6224#0 CCATCAGCTCTGAAGAGCTATTGTGTGATGATGGTATAAACACTCTATATGGTATAATAT 3353 consensus_6224#1 CCATCAGCTCTGAAGAGCTATTGTGTGATGATGGTATAAACACTCTATGTGGTATAATAT 493 consensus_6224#2 TC--CAACAATTGGGTACCATTGTCCCGGGCTTNTTTACATGG---GGANGGNTCAACTC 421 * ** * * * * ***** * * * ** * ** ** consensus_6224#0 CCCCCACAAAGTAGCTGGCTACTGAATGACTGATGAAAATATTGCTATCCTAGTATACCT 3413 consensus_6224#1 CCCCCACAAAGTAGCTGGCTACTGAATGACTGATGAAAATATTGCTATCCTAGTATACCT 553 consensus_6224#2 CANCCTTGAAGCTTTTACCCCNTGG----------------------------------- 446 * ** *** * * ** consensus_6224#0 TTTGCTGACCCTGGGAAAGTAGCATTTTGTACAGAACATGAACTATGCTTTAGTATTAAT 3473 consensus_6224#1 TTTGCTGACCCTGGGAAAGTAGCATTTTGTACAGAACATGAACTATGCTTTGGTATTAAT 613 consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 CATAGTCTATCTGAACTACTGAAGTGTTTATGGTCTGAATTCTAAGAAGTTATTCTGCTG 3533 consensus_6224#1 CATAGTCTATCTGAACTACTGAAGTGTTTATGGTCTGAATTCTAAGAAGTTATTTTGCTG 673 consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 CATCTCTGCTATGAATATGAAGAATGTGATGAATGTGGCATTCTCGTAGGAATTTCAAGG 3593 consensus_6224#1 CA--------AAAAAAAAAAAAA------------------------------------- 688 consensus_6224#2 ------------------------------------------------------------ consensus_6224#0 GACTTTTTTTGTAAGAAGTATGCTCAATTCCAGCAAGAAATTGGAAAT 3641 consensus_6224#1 ------------------------------------------------ consensus_6224#2 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||