Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6226 cluster # 6226       Sequences # 4       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6226#0 length = 1785 sequences # 1  
consensus_6226#1 length = 1620 sequences # 1  
consensus_6226#2 length = 870 sequences # 1  
consensus_6226#3 length = 668 sequences # 1  

consensusID : consensus_6226#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1785
fasta sequence
                              [CCCTTCTTCCTTCCTCCATTTGCTGCTAGCAGTGGCTATCTTCTCCCTCAAATCCCCACTCTAGTACTGTTGCTGCTGCCACCATGTTGCTCTCGGCAACCTCAATGCCCAGGCTACCAACAAGACCTGCCCTCCTAATCCTCCTCCTTGAGCTCTCCAACCCACAGCTCAAAGAAGTGGACTCCCATGGCTAGAATGGAGTCACGCATGGAGCTCTAAGCCCAGATGCCCTGACCAGTGCCCCATAGAGCTCGACATCACCGTGCAACCATCCCCTAGGTCCAGTTCTTCCCCAAACCGGCAGTCCTCCTTGCTACTCTCCCTGTCCTCCTCCTAGCCGAGCTGATGGTGGTGCTCTACGTCACCATTTTCAGGTTGATTGGCTACAAATCTTGGGAATGGTTGGCAAATGAGGTGAAGGTGGAGAGGGGTTGTGTTGCTCGATGTGTTCACTGGTTGAAGGTACATTCTTCATGCAAGGGAACTGCCAATATTGAGCATGATTGAGAAAATAAAGACCTAAATCATGACTAGAGTGTACATGAAGCAAAAGGAGGTTGAGGAGAAATGGAGTGGAAATATATGCCCAAAGATAAAACAGAAACTAGAGAAGACTGCCGAGTTAGCCAATACATGCTACACACTGCCTGCTGGGAAGGGTATTTTCCAAGTCACCGACAGAGATCACCAGTTCATAGTTGATATCAATGTGAAGTGTTGTGATTGCAGACGCTGGCAACTCACAGGAATACCATGTAGTCATGCCATATCATGCTTTAGGAATGAAAGGATACAACCTGAGGACATGGTATCTCCATGCTACTCATTAGAGTCATTTCGTGCTGCATACAAATATAACATAGTGCCTTCAAGGGATCAATCTAAATGGGAAAAAATGAATGGTGTAAATGTCCAACCTCCTAAATATGAAAAGAAAGTAGGGAGACCAAAGAAAACTAGGAGGAAGCAATCCATTGAATTGGAGGGTGGTACAAAATTGTCCAAGCATGGCGTGGTTATTCATTGTAGTTATTGTGATGGGGCTGGACACAATAGGAATAATTGTGAATTACTTGGTACAACTAAAAAGATGAGACCAAAAAGGAAGAGGAGTGTACAAGTAATGCAAGATGACAAAGATGTTTACATGAATGAGGTATAGTTAACTATATCCTTTATGTACTGTCACCTTCGGCAAGCATTTCTTAATCTTTTATGTCAAACGTTTCCAATTGTTCCAGAAGAATTAGTACAAGAGGGCCAACATAGCACTTCAGTGTTGACTACTTTATTAGAACAGGTTAGTTGCATGCATGGTTTAACATTTTTCACTGTCACTATCTGCTACCTACTCATGTTTCATACTAATTTGCTTGTTAGGCAACATCAACTCAATCCTCCATTAACCAGCTAGGCCCTTTACCGGATTCAGTCTTCATTGAAGCTAATAGAAATACACTACCACAGCCAAGAGCGACAACATCTACACACGTGGGCAGAGCAAGGATGAAGAGAAGCAACACAAGATCAACAACGGCCAGATCATCTAGACCACCTAGCCAGAAGAAAAAAAAATAGGAGTTATATGGGTGCTTTCTATCTTGTTTTTTCAATGTTGCAAAATGCAAAATAAAAGGTGCACAATTCAACAATTGGATTTATTCCCCTTTTGAAATTTATGGCTTTTGGTTAGTGGAACTTAGTGTTGACTGCTCATGGATGTTATCAGTTAATGTAAGATCGTTTTCTATGTGATTTTGAGATGTGGAACATCATTAAGAAATG]

[+] EMBL AK101632             [CCCTTCTTCCTTCCTCCATTTGCTGCTAGCAGTGGCTATCTTCTCCCTCAAATCCCCACTCTAGTACTGTTGCTGCTGCCACCATGTTGCTCTCGGCAACCTCAATGCCCAGGCTACCAACAAGACCTGCCCTCCTAATCCTCCTCCTTGAGCTCTCCAACCCACAGCTCAAAGAAGTGGACTCCCATGGCTAGAATGGAGTCACGCATGGAGCTCTAAGCCCAGATGCCCTGACCAGTGCCCCATAGAGCTCGACATCACCGTGCAACCATCCCCTAGGTCCAGTTCTTCCCCAAACCGGCAGTCCTCCTTGCTACTCTCCCTGTCCTCCTCCTAGCCGAGCTGATGGTGGTGCTCTACGTCACCATTTTCAGGTTGATTGGCTACAAATCTTGGGAATGGTTGGCAAATGAGGTGAAGGTGGAGAGGGGTTGTGTTGCTCGATGTGTTCACTGGTTGAAGGTACATTCTTCATGCAAGGGAACTGCCAATATTGAGCATGATTGAGAAAATAAAGACCTAAATCATGACTAGAGTGTACATGAAGCAAAAGGAGGTTGAGGAGAAATGGAGTGGAAATATATGCCCAAAGATAAAACAGAAACTAGAGAAGACTGCCGAGTTAGCCAATACATGCTACACACTGCCTGCTGGGAAGGGTATTTTCCAAGTCACCGACAGAGATCACCAGTTCATAGTTGATATCAATGTGAAGTGTTGTGATTGCAGACGCTGGCAACTCACAGGAATACCATGTAGTCATGCCATATCATGCTTTAGGAATGAAAGGATACAACCTGAGGACATGGTATCTCCATGCTACTCATTAGAGTCATTTCGTGCTGCATACAAATATAACATAGTGCCTTCAAGGGATCAATCTAAATGGGAAAAAATGAATGGTGTAAATGTCCAACCTCCTAAATATGAAAAGAAAGTAGGGAGACCAAAGAAAACTAGGAGGAAGCAATCCATTGAATTGGAGGGTGGTACAAAATTGTCCAAGCATGGCGTGGTTATTCATTGTAGTTATTGTGATGGGGCTGGACACAATAGGAATAATTGTGAATTACTTGGTACAACTAAAAAGATGAGACCAAAAAGGAAGAGGAGTGTACAAGTAATGCAAGATGACAAAGATGTTTACATGAATGAGGTATAGTTAACTATATCCTTTATGTACTGTCACCTTCGGCAAGCATTTCTTAATCTTTTATGTCAAACGTTTCCAATTGTTCCAGAAGAATTAGTACAAGAGGGCCAACATAGCACTTCAGTGTTGACTACTTTATTAGAACAGGTTAGTTGCATGCATGGTTTAACATTTTTCACTGTCACTATCTGCTACCTACTCATGTTTCATACTAATTTGCTTGTTAGGCAACATCAACTCAATCCTCCATTAACCAGCTAGGCCCTTTACCGGATTCAGTCTTCATTGAAGCTAATAGAAATACACTACCACAGCCAAGAGCGACAACATCTACACACGTGGGCAGAGCAAGGATGAAGAGAAGCAACACAAGATCAACAACGGCCAGATCATCTAGACCACCTAGCCAGAAGAAAAAAAAATAGGAGTTATATGGGTGCTTTCTATCTTGTTTTTTCAATGTTGCAAAATGCAAAATAAAAGGTGCACAATTCAACAATTGGATTTATTCCCCTTTTGAAATTTATGGCTTTTGGTTAGTGGAACTTAGTGTTGACTGCTCATGGATGTTATCAGTTAATGTAAGATCGTTTTCTATGTGATTTTGAGATGTGGAACATCATTAAGAAATG]


>consensus_6226#0 CCCTTCTTCCTTCCTCCATTTGCTGCTAGCAGTGGCTATCTTCTCCCTCAAATCCCCACT CTAGTACTGTTGCTGCTGCCACCATGTTGCTCTCGGCAACCTCAATGCCCAGGCTACCAA CAAGACCTGCCCTCCTAATCCTCCTCCTTGAGCTCTCCAACCCACAGCTCAAAGAAGTGG ACTCCCATGGCTAGAATGGAGTCACGCATGGAGCTCTAAGCCCAGATGCCCTGACCAGTG CCCCATAGAGCTCGACATCACCGTGCAACCATCCCCTAGGTCCAGTTCTTCCCCAAACCG GCAGTCCTCCTTGCTACTCTCCCTGTCCTCCTCCTAGCCGAGCTGATGGTGGTGCTCTAC GTCACCATTTTCAGGTTGATTGGCTACAAATCTTGGGAATGGTTGGCAAATGAGGTGAAG GTGGAGAGGGGTTGTGTTGCTCGATGTGTTCACTGGTTGAAGGTACATTCTTCATGCAAG GGAACTGCCAATATTGAGCATGATTGAGAAAATAAAGACCTAAATCATGACTAGAGTGTA CATGAAGCAAAAGGAGGTTGAGGAGAAATGGAGTGGAAATATATGCCCAAAGATAAAACA GAAACTAGAGAAGACTGCCGAGTTAGCCAATACATGCTACACACTGCCTGCTGGGAAGGG TATTTTCCAAGTCACCGACAGAGATCACCAGTTCATAGTTGATATCAATGTGAAGTGTTG TGATTGCAGACGCTGGCAACTCACAGGAATACCATGTAGTCATGCCATATCATGCTTTAG GAATGAAAGGATACAACCTGAGGACATGGTATCTCCATGCTACTCATTAGAGTCATTTCG TGCTGCATACAAATATAACATAGTGCCTTCAAGGGATCAATCTAAATGGGAAAAAATGAA TGGTGTAAATGTCCAACCTCCTAAATATGAAAAGAAAGTAGGGAGACCAAAGAAAACTAG GAGGAAGCAATCCATTGAATTGGAGGGTGGTACAAAATTGTCCAAGCATGGCGTGGTTAT TCATTGTAGTTATTGTGATGGGGCTGGACACAATAGGAATAATTGTGAATTACTTGGTAC AACTAAAAAGATGAGACCAAAAAGGAAGAGGAGTGTACAAGTAATGCAAGATGACAAAGA TGTTTACATGAATGAGGTATAGTTAACTATATCCTTTATGTACTGTCACCTTCGGCAAGC ATTTCTTAATCTTTTATGTCAAACGTTTCCAATTGTTCCAGAAGAATTAGTACAAGAGGG CCAACATAGCACTTCAGTGTTGACTACTTTATTAGAACAGGTTAGTTGCATGCATGGTTT AACATTTTTCACTGTCACTATCTGCTACCTACTCATGTTTCATACTAATTTGCTTGTTAG GCAACATCAACTCAATCCTCCATTAACCAGCTAGGCCCTTTACCGGATTCAGTCTTCATT GAAGCTAATAGAAATACACTACCACAGCCAAGAGCGACAACATCTACACACGTGGGCAGA GCAAGGATGAAGAGAAGCAACACAAGATCAACAACGGCCAGATCATCTAGACCACCTAGC CAGAAGAAAAAAAAATAGGAGTTATATGGGTGCTTTCTATCTTGTTTTTTCAATGTTGCA AAATGCAAAATAAAAGGTGCACAATTCAACAATTGGATTTATTCCCCTTTTGAAATTTAT GGCTTTTGGTTAGTGGAACTTAGTGTTGACTGCTCATGGATGTTATCAGTTAATGTAAGA TCGTTTTCTATGTGATTTTGAGATGTGGAACATCATTAAGAAATG



consensusID : consensus_6226#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1620
fasta sequence
                              [CCCTTCTTCCTTCCTCCATTTGCTGCTAGCAGTGGCTATCTTCTCCCTCAAATCCCCACTCTAGTACTGTTGCTGCTGCCACCATGTTGCTCTCGGCAACCTCAATGCCCAGGCTACCAACAAGACCTGCCCTCCTAATCCTCCTCCTTGAGCTCTCCAACCCACAGCTCAAAGAAGTGGACTCCCATGGCTAGAATGGAGTCACGCATGGAGCTCTAAGCCCAGATGCCCTGACCAGTGCCCCATAGAGCACGACATCACCGTGCAACCATCCCCTAGGTCCAGTTCTTCCCCAAACCGGCAGTCCTCCTTGCTACTCTCCCTGTCCTCCTCCTAGCCGAGCTGATGGTGGTGCTCTACGTCACCATTTTCAGGTTGATTGGCTACAAATCTTGGGAATGGTTGGCAAATGAGGTGAAGGTGGAGAGGGGTTGTGTTGCTCGATGTGTTCACTGGTTGAAGGTACATTCTTCATGCAAGGGAACTGCCAATATTGAGCATGATTGAGAAAATAAAGACCTAAATCATGACTAGAGTGTACATGAAGCAAAAGGAGGTTGAGGAGAAATGGAGTGGAAATATATGCCCAAAGATAAAACAGAAACTAGAGAAGACTGCCGAGTTAGCCAATACATGCTACACACTGCCTGCTGGGAAGGGTATTTTCCAAGTCACCGACAGAGATCACCAGTTCATAGTTGATATCAATGTGAAGTGTTGTGATTGCAGACGCTGGCAACTCACAGGAATACCATGTAGTCATGCCATATCATGCTTTAGGAATGAAAGGATACAACCTGAGGACATGGTATCTCCATGCTACTCATTAGAGTCATTTCGTGCTGCATACAAATATAACATAGTGCCTTCAAGGGATCAATCTAAATGGGAAAAAATGAATGGTGTAAATGTCCAACCTCCTAAATATGAAAAGAAAGTAGGGAGACCAAAGAAAACTAGGAGGAAGCAATCCATTGAATTGGAGGGTGGTACAAAATTGTCCAAGCATGGCGTGGTTATTCATTGTAGTTATTGTGATGGGGCTGGACACAATAGGAATAATTGTGAATTACTTGGTACAACTAAAAAGATGAGACCAAGAAGGAAGAGGAGTGTACAAGTAATGCAAGATGACAAAGATGTTTACATGAATGAGAAGAATTAGTACAAGAGGGCCAACATAGCACTTCAGTGTTGACTACTTTATTAGAACAGGCAACATCAACTCAATCCTCCATTAACCAGCTAGGCCTTTACCGGATTCAGTCTTCATTGAAGCTAATAGAAATACACTACCACAGCCAAGAGCGACAACATCTACACACGTGGGCAGAGCAAGGATGAAGAGAAGCAACACAAGATCAACAACGGCCAGATCATCTAGACCACCTAGCCAGAAGAAAAAAAAAATAGAAGTTATATGGGTGCTTTCTATCTTGTTTTTTCAATGTTGCAAAATGCAAAATAAAAGGTGCACAATTCAACAATTGGATTTATTCCCCTTTTGAAATTTATGGCTTTTGGTTAGTGGAACTTAGTGTTGACTGCTCATGGATGTTATCAGTTAATGTAAGATCGTTTTCTATGTGATTTTGAGATGTGGAACATCATTAAGAAATG]

[+] EMBL AK071959             [CCCTTCTTCCTTCCTCCATTTGCTGCTAGCAGTGGCTATCTTCTCCCTCAAATCCCCACTCTAGTACTGTTGCTGCTGCCACCATGTTGCTCTCGGCAACCTCAATGCCCAGGCTACCAACAAGACCTGCCCTCCTAATCCTCCTCCTTGAGCTCTCCAACCCACAGCTCAAAGAAGTGGACTCCCATGGCTAGAATGGAGTCACGCATGGAGCTCTAAGCCCAGATGCCCTGACCAGTGCCCCATAGAGCACGACATCACCGTGCAACCATCCCCTAGGTCCAGTTCTTCCCCAAACCGGCAGTCCTCCTTGCTACTCTCCCTGTCCTCCTCCTAGCCGAGCTGATGGTGGTGCTCTACGTCACCATTTTCAGGTTGATTGGCTACAAATCTTGGGAATGGTTGGCAAATGAGGTGAAGGTGGAGAGGGGTTGTGTTGCTCGATGTGTTCACTGGTTGAAGGTACATTCTTCATGCAAGGGAACTGCCAATATTGAGCATGATTGAGAAAATAAAGACCTAAATCATGACTAGAGTGTACATGAAGCAAAAGGAGGTTGAGGAGAAATGGAGTGGAAATATATGCCCAAAGATAAAACAGAAACTAGAGAAGACTGCCGAGTTAGCCAATACATGCTACACACTGCCTGCTGGGAAGGGTATTTTCCAAGTCACCGACAGAGATCACCAGTTCATAGTTGATATCAATGTGAAGTGTTGTGATTGCAGACGCTGGCAACTCACAGGAATACCATGTAGTCATGCCATATCATGCTTTAGGAATGAAAGGATACAACCTGAGGACATGGTATCTCCATGCTACTCATTAGAGTCATTTCGTGCTGCATACAAATATAACATAGTGCCTTCAAGGGATCAATCTAAATGGGAAAAAATGAATGGTGTAAATGTCCAACCTCCTAAATATGAAAAGAAAGTAGGGAGACCAAAGAAAACTAGGAGGAAGCAATCCATTGAATTGGAGGGTGGTACAAAATTGTCCAAGCATGGCGTGGTTATTCATTGTAGTTATTGTGATGGGGCTGGACACAATAGGAATAATTGTGAATTACTTGGTACAACTAAAAAGATGAGACCAAGAAGGAAGAGGAGTGTACAAGTAATGCAAGATGACAAAGATGTTTACATGAATGAGAAGAATTAGTACAAGAGGGCCAACATAGCACTTCAGTGTTGACTACTTTATTAGAACAGGCAACATCAACTCAATCCTCCATTAACCAGCTAGGCCTTTACCGGATTCAGTCTTCATTGAAGCTAATAGAAATACACTACCACAGCCAAGAGCGACAACATCTACACACGTGGGCAGAGCAAGGATGAAGAGAAGCAACACAAGATCAACAACGGCCAGATCATCTAGACCACCTAGCCAGAAGAAAAAAAAAATAGAAGTTATATGGGTGCTTTCTATCTTGTTTTTTCAATGTTGCAAAATGCAAAATAAAAGGTGCACAATTCAACAATTGGATTTATTCCCCTTTTGAAATTTATGGCTTTTGGTTAGTGGAACTTAGTGTTGACTGCTCATGGATGTTATCAGTTAATGTAAGATCGTTTTCTATGTGATTTTGAGATGTGGAACATCATTAAGAAATG]


>consensus_6226#1 CCCTTCTTCCTTCCTCCATTTGCTGCTAGCAGTGGCTATCTTCTCCCTCAAATCCCCACT CTAGTACTGTTGCTGCTGCCACCATGTTGCTCTCGGCAACCTCAATGCCCAGGCTACCAA CAAGACCTGCCCTCCTAATCCTCCTCCTTGAGCTCTCCAACCCACAGCTCAAAGAAGTGG ACTCCCATGGCTAGAATGGAGTCACGCATGGAGCTCTAAGCCCAGATGCCCTGACCAGTG CCCCATAGAGCACGACATCACCGTGCAACCATCCCCTAGGTCCAGTTCTTCCCCAAACCG GCAGTCCTCCTTGCTACTCTCCCTGTCCTCCTCCTAGCCGAGCTGATGGTGGTGCTCTAC GTCACCATTTTCAGGTTGATTGGCTACAAATCTTGGGAATGGTTGGCAAATGAGGTGAAG GTGGAGAGGGGTTGTGTTGCTCGATGTGTTCACTGGTTGAAGGTACATTCTTCATGCAAG GGAACTGCCAATATTGAGCATGATTGAGAAAATAAAGACCTAAATCATGACTAGAGTGTA CATGAAGCAAAAGGAGGTTGAGGAGAAATGGAGTGGAAATATATGCCCAAAGATAAAACA GAAACTAGAGAAGACTGCCGAGTTAGCCAATACATGCTACACACTGCCTGCTGGGAAGGG TATTTTCCAAGTCACCGACAGAGATCACCAGTTCATAGTTGATATCAATGTGAAGTGTTG TGATTGCAGACGCTGGCAACTCACAGGAATACCATGTAGTCATGCCATATCATGCTTTAG GAATGAAAGGATACAACCTGAGGACATGGTATCTCCATGCTACTCATTAGAGTCATTTCG TGCTGCATACAAATATAACATAGTGCCTTCAAGGGATCAATCTAAATGGGAAAAAATGAA TGGTGTAAATGTCCAACCTCCTAAATATGAAAAGAAAGTAGGGAGACCAAAGAAAACTAG GAGGAAGCAATCCATTGAATTGGAGGGTGGTACAAAATTGTCCAAGCATGGCGTGGTTAT TCATTGTAGTTATTGTGATGGGGCTGGACACAATAGGAATAATTGTGAATTACTTGGTAC AACTAAAAAGATGAGACCAAGAAGGAAGAGGAGTGTACAAGTAATGCAAGATGACAAAGA TGTTTACATGAATGAGAAGAATTAGTACAAGAGGGCCAACATAGCACTTCAGTGTTGACT ACTTTATTAGAACAGGCAACATCAACTCAATCCTCCATTAACCAGCTAGGCCTTTACCGG ATTCAGTCTTCATTGAAGCTAATAGAAATACACTACCACAGCCAAGAGCGACAACATCTA CACACGTGGGCAGAGCAAGGATGAAGAGAAGCAACACAAGATCAACAACGGCCAGATCAT CTAGACCACCTAGCCAGAAGAAAAAAAAAATAGAAGTTATATGGGTGCTTTCTATCTTGT TTTTTCAATGTTGCAAAATGCAAAATAAAAGGTGCACAATTCAACAATTGGATTTATTCC CCTTTTGAAATTTATGGCTTTTGGTTAGTGGAACTTAGTGTTGACTGCTCATGGATGTTA TCAGTTAATGTAAGATCGTTTTCTATGTGATTTTGAGATGTGGAACATCATTAAGAAATG



consensusID : consensus_6226#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 870
fasta sequence
                              [AAGGGGGAAAATAAAGACCTAAATCATGACTAGAGTGTACATGAAGCAAAAGGAGGTTGAGGAGAAATGGAATGGAAATATATGCCCAAAGATAAAACAGAAACTAGAGAAGACTGCCGAGTTAGCCAATACATGCTAGACACTGCCTGCTGGGAAGGGTATTTTCCAAGTCACCGACAGAGATCACCAGTTCATAGTTGATATCAATGTGAAGTGTTGTGATTGCAGACGCTGGCAACTCACAGGAATACCATGTAGTCATGCCATATCATGCTTTAGGAATGAAAGGATACAACCTGAGGACATGGTATCTCCATGCTACTCATTAGAGTCATTTCGTGCTGCATACAAATATAACATAGTGCCTTCAAGGGATCAATCTAAATGGGAAAAAATGAATGGTGTAAATGTCCAACCTCCTAAATATGAAAAGAAAGTAGGGAGACCAAAGAAAACTAGGAGGAAGCAATCCATTGAATTGGAGGGTGGTACAAAATTGTCCAAGCATGGCGTGGTTATTCATTGTAGTTATTGTGATGGGGCTGGACACAATAGGAATAATTGTGAATTACTTGGTACACCTAAAAAGATGAGACCAAAAAGGGAAGAGGAGTGTNCAAGTAATGCAAGATGACCAAAGATGTTTACATGAATGAGAAGAATTAGTACAAGAGGGGCCCACATAGCACTTCAGTGGTGACTACNTTATTAGAACAGGCAACATCAACTCAATCCTTCATTAANCAGCTAGGNCCTTTACCGGGNTCAGTCTTCATTGGAGCTTATAGAAAACNCTACCNCAGGNCAAGAGCGGCAACATTTTCCCCACGTGGGCCAGAGCCAGGGNTGAAGAGAANCCNCCCCAGGNTC]

[+] EMBL CA763906             [AAGGGGGAAAATAAAGACCTAAATCATGACTAGAGTGTACATGAAGCAAAAGGAGGTTGAGGAGAAATGGAATGGAAATATATGCCCAAAGATAAAACAGAAACTAGAGAAGACTGCCGAGTTAGCCAATACATGCTAGACACTGCCTGCTGGGAAGGGTATTTTCCAAGTCACCGACAGAGATCACCAGTTCATAGTTGATATCAATGTGAAGTGTTGTGATTGCAGACGCTGGCAACTCACAGGAATACCATGTAGTCATGCCATATCATGCTTTAGGAATGAAAGGATACAACCTGAGGACATGGTATCTCCATGCTACTCATTAGAGTCATTTCGTGCTGCATACAAATATAACATAGTGCCTTCAAGGGATCAATCTAAATGGGAAAAAATGAATGGTGTAAATGTCCAACCTCCTAAATATGAAAAGAAAGTAGGGAGACCAAAGAAAACTAGGAGGAAGCAATCCATTGAATTGGAGGGTGGTACAAAATTGTCCAAGCATGGCGTGGTTATTCATTGTAGTTATTGTGATGGGGCTGGACACAATAGGAATAATTGTGAATTACTTGGTACACCTAAAAAGATGAGACCAAAAAGGGAAGAGGAGTGTNCAAGTAATGCAAGATGACCAAAGATGTTTACATGAATGAGAAGAATTAGTACAAGAGGGGCCCACATAGCACTTCAGTGGTGACTACNTTATTAGAACAGGCAACATCAACTCAATCCTTCATTAANCAGCTAGGNCCTTTACCGGGNTCAGTCTTCATTGGAGCTTATAGAAAACNCTACCNCAGGNCAAGAGCGGCAACATTTTCCCCACGTGGGCCAGAGCCAGGGNTGAAGAGAANCCNCCCCAGGNTC]


>consensus_6226#2 AAGGGGGAAAATAAAGACCTAAATCATGACTAGAGTGTACATGAAGCAAAAGGAGGTTGA GGAGAAATGGAATGGAAATATATGCCCAAAGATAAAACAGAAACTAGAGAAGACTGCCGA GTTAGCCAATACATGCTAGACACTGCCTGCTGGGAAGGGTATTTTCCAAGTCACCGACAG AGATCACCAGTTCATAGTTGATATCAATGTGAAGTGTTGTGATTGCAGACGCTGGCAACT CACAGGAATACCATGTAGTCATGCCATATCATGCTTTAGGAATGAAAGGATACAACCTGA GGACATGGTATCTCCATGCTACTCATTAGAGTCATTTCGTGCTGCATACAAATATAACAT AGTGCCTTCAAGGGATCAATCTAAATGGGAAAAAATGAATGGTGTAAATGTCCAACCTCC TAAATATGAAAAGAAAGTAGGGAGACCAAAGAAAACTAGGAGGAAGCAATCCATTGAATT GGAGGGTGGTACAAAATTGTCCAAGCATGGCGTGGTTATTCATTGTAGTTATTGTGATGG GGCTGGACACAATAGGAATAATTGTGAATTACTTGGTACACCTAAAAAGATGAGACCAAA AAGGGAAGAGGAGTGTNCAAGTAATGCAAGATGACCAAAGATGTTTACATGAATGAGAAG AATTAGTACAAGAGGGGCCCACATAGCACTTCAGTGGTGACTACNTTATTAGAACAGGCA ACATCAACTCAATCCTTCATTAANCAGCTAGGNCCTTTACCGGGNTCAGTCTTCATTGGA GCTTATAGAAAACNCTACCNCAGGNCAAGAGCGGCAACATTTTCCCCACGTGGGCCAGAG CCAGGGNTGAAGAGAANCCNCCCCAGGNTC



consensusID : consensus_6226#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 668
fasta sequence
                              [AGTATGGAGGCCAAAAGGAACTAGGGGGAAGCAATCCCTTGAATTGGAGGGTGGTTCACAATTGTCCAAGCACGGCGGGGGTTTTCATAGTAGTTATTGTGATGGGGGTGGCCCACATAGGAATTATTGTGAATTCCTTGGTGCACCTAAAAAGATGAGGCCAAAAAGGAAGAGGAGTGTTCAAGTAATGCAAGATGGCAAAGATGTTTACATGAATGAGGTATAGTTAACTATATCCTTTATGTACTGTCACCTTCGGCAAGCATTTTTTAATTTTTTATGTCAAACGTTTCCAATTGTTCCAGAAGAATTAGTACAAGAGGGCCAACATAGCCCTTCAGTGTTGGCTACTTTATTAGAACAGGCAACATCAACTCAATCCTCCATTAACCAGCTAGGCCCTTTACCGGATTCAGTTTTCATTGAAGCTAATAGAAATTCCCTTCCACAGCCAAGAGCGGCAACATCTACCCCCGTGGGCAGAGCAAGGATGAAGAGAAGCAACCCAAGATCAACAACGGCCAGATTATTTAGGCCCCCTAGCCAGAAGAAAAAAAAAATAGAAGTTATATGGGTGCCTTCTATCTTGTTTTTTCAATGTTGCAAAATGCAAAATAAAAGGTGCCCAATTCAACAATTGGATTTATTCCCCTTTTGAAAAAAAAAAA]

[-] EMBL CA762735             [AGTATGGAGGCCAAAAGGAACTAGGGGGAAGCAATCCCTTGAATTGGAGGGTGGTTCACAATTGTCCAAGCACGGCGGGGGTTTTCATAGTAGTTATTGTGATGGGGGTGGCCCACATAGGAATTATTGTGAATTCCTTGGTGCACCTAAAAAGATGAGGCCAAAAAGGAAGAGGAGTGTTCAAGTAATGCAAGATGGCAAAGATGTTTACATGAATGAGGTATAGTTAACTATATCCTTTATGTACTGTCACCTTCGGCAAGCATTTTTTAATTTTTTATGTCAAACGTTTCCAATTGTTCCAGAAGAATTAGTACAAGAGGGCCAACATAGCCCTTCAGTGTTGGCTACTTTATTAGAACAGGCAACATCAACTCAATCCTCCATTAACCAGCTAGGCCCTTTACCGGATTCAGTTTTCATTGAAGCTAATAGAAATTCCCTTCCACAGCCAAGAGCGGCAACATCTACCCCCGTGGGCAGAGCAAGGATGAAGAGAAGCAACCCAAGATCAACAACGGCCAGATTATTTAGGCCCCCTAGCCAGAAGAAAAAAAAAATAGAAGTTATATGGGTGCCTTCTATCTTGTTTTTTCAATGTTGCAAAATGCAAAATAAAAGGTGCCCAATTCAACAATTGGATTTATTCCCCTTTTGAAAAAAAAAAA]


>consensus_6226#3 AGTATGGAGGCCAAAAGGAACTAGGGGGAAGCAATCCCTTGAATTGGAGGGTGGTTCACA ATTGTCCAAGCACGGCGGGGGTTTTCATAGTAGTTATTGTGATGGGGGTGGCCCACATAG GAATTATTGTGAATTCCTTGGTGCACCTAAAAAGATGAGGCCAAAAAGGAAGAGGAGTGT TCAAGTAATGCAAGATGGCAAAGATGTTTACATGAATGAGGTATAGTTAACTATATCCTT TATGTACTGTCACCTTCGGCAAGCATTTTTTAATTTTTTATGTCAAACGTTTCCAATTGT TCCAGAAGAATTAGTACAAGAGGGCCAACATAGCCCTTCAGTGTTGGCTACTTTATTAGA ACAGGCAACATCAACTCAATCCTCCATTAACCAGCTAGGCCCTTTACCGGATTCAGTTTT CATTGAAGCTAATAGAAATTCCCTTCCACAGCCAAGAGCGGCAACATCTACCCCCGTGGG CAGAGCAAGGATGAAGAGAAGCAACCCAAGATCAACAACGGCCAGATTATTTAGGCCCCC TAGCCAGAAGAAAAAAAAAATAGAAGTTATATGGGTGCCTTCTATCTTGTTTTTTCAATG TTGCAAAATGCAAAATAAAAGGTGCCCAATTCAACAATTGGATTTATTCCCCTTTTGAAA AAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6226#0      CCCTTCTTCCTTCCTCCATTTGCTGCTAGCAGTGGCTATCTTCTCCCTCAAATCCCCACT 60
consensus_6226#3      ------------------------------------------------------------
consensus_6226#1      CCCTTCTTCCTTCCTCCATTTGCTGCTAGCAGTGGCTATCTTCTCCCTCAAATCCCCACT 60
consensus_6226#2      ------------------------------------------------------------
                                                                                  

consensus_6226#0      CTAGTACTGTTGCTGCTGCCACCATGTTGCTCTCGGCAACCTCAATGCCCAGGCTACCAA 120
consensus_6226#3      ------------------------------------------------------------
consensus_6226#1      CTAGTACTGTTGCTGCTGCCACCATGTTGCTCTCGGCAACCTCAATGCCCAGGCTACCAA 120
consensus_6226#2      ------------------------------------------------------------
                                                                                  

consensus_6226#0      CAAGACCTGCCCTCCTAATCCTCCTCCTTGAGCTCTCCAACCCACAGCTCAAAGAAGTGG 180
consensus_6226#3      ------------------------------------------------------------
consensus_6226#1      CAAGACCTGCCCTCCTAATCCTCCTCCTTGAGCTCTCCAACCCACAGCTCAAAGAAGTGG 180
consensus_6226#2      ------------------------------------------------------------
                                                                                  

consensus_6226#0      ACTCCCATGGCTAGAATGGAGTCACGCATGGAGCTCTAAGCCCAGATGCCCTGACCAGTG 240
consensus_6226#3      ------------------------------------------------------------
consensus_6226#1      ACTCCCATGGCTAGAATGGAGTCACGCATGGAGCTCTAAGCCCAGATGCCCTGACCAGTG 240
consensus_6226#2      ------------------------------------------------------------
                                                                                  

consensus_6226#0      CCCCATAGAGCTCGACATCACCGTGCAACCATCCCCTAGGTCCAGTTCTTCCCCAAACCG 300
consensus_6226#3      ------------------------------------------------------------
consensus_6226#1      CCCCATAGAGCACGACATCACCGTGCAACCATCCCCTAGGTCCAGTTCTTCCCCAAACCG 300
consensus_6226#2      ------------------------------------------------------------
                                                                                  

consensus_6226#0      GCAGTCCTCCTTGCTACTCTCCCTGTCCTCCTCCTAGCCGAGCTGATGGTGGTGCTCTAC 360
consensus_6226#3      ------------------------------------------------------------
consensus_6226#1      GCAGTCCTCCTTGCTACTCTCCCTGTCCTCCTCCTAGCCGAGCTGATGGTGGTGCTCTAC 360
consensus_6226#2      ------------------------------------------------------------
                                                                                  

consensus_6226#0      GTCACCATTTTCAGGTTGATTGGCTACAAATCTTGGGAATGGTTGGCAAATGAGGTGAAG 420
consensus_6226#3      ------------------------------------------------------------
consensus_6226#1      GTCACCATTTTCAGGTTGATTGGCTACAAATCTTGGGAATGGTTGGCAAATGAGGTGAAG 420
consensus_6226#2      ------------------------------------------------------------
                                                                                  

consensus_6226#0      GTGGAGAGGGGTTGTGTTGCTCGATGTGTTCACTGGTTGAAGGTACATTCTTCATGCAAG 480
consensus_6226#3      ------------------------------------------------------------
consensus_6226#1      GTGGAGAGGGGTTGTGTTGCTCGATGTGTTCACTGGTTGAAGGTACATTCTTCATGCAAG 480
consensus_6226#2      ------------------------------------------------------------
                                                                                  

consensus_6226#0      GGAACTGCCAATATTGAGCATGATTGAGAAAATAAAGACCTAAATCATGACTAGAGTGTA 540
consensus_6226#3      ------------------------------------------------------------
consensus_6226#1      GGAACTGCCAATATTGAGCATGATTGAGAAAATAAAGACCTAAATCATGACTAGAGTGTA 540
consensus_6226#2      ---------------------AAGGGGGAAAATAAAGACCTAAATCATGACTAGAGTGTA 39
                                                                                  

consensus_6226#0      CATGAAGCAAAAGGAGGTTGAGGAGAAATGGAGTGGAAATATATGCCCAAAGATAAAACA 600
consensus_6226#3      ------------------------------------------------------------
consensus_6226#1      CATGAAGCAAAAGGAGGTTGAGGAGAAATGGAGTGGAAATATATGCCCAAAGATAAAACA 600
consensus_6226#2      CATGAAGCAAAAGGAGGTTGAGGAGAAATGGAATGGAAATATATGCCCAAAGATAAAACA 99
                                                                                  

consensus_6226#0      GAAACTAGAGAAGACTGCCGAGTTAGCCAATACATGCTACACACTGCCTGCTGGGAAGGG 660
consensus_6226#3      ------------------------------------------------------------
consensus_6226#1      GAAACTAGAGAAGACTGCCGAGTTAGCCAATACATGCTACACACTGCCTGCTGGGAAGGG 660
consensus_6226#2      GAAACTAGAGAAGACTGCCGAGTTAGCCAATACATGCTAGACACTGCCTGCTGGGAAGGG 159
                                                                                  

consensus_6226#0      TATTTTCCAAGTCACCGACAGAGATCACCAGTTCATAGTTGATATCAATGTGAAGTGTTG 720
consensus_6226#3      ------------------------------------------------------------
consensus_6226#1      TATTTTCCAAGTCACCGACAGAGATCACCAGTTCATAGTTGATATCAATGTGAAGTGTTG 720
consensus_6226#2      TATTTTCCAAGTCACCGACAGAGATCACCAGTTCATAGTTGATATCAATGTGAAGTGTTG 219
                                                                                  

consensus_6226#0      TGATTGCAGACGCTGGCAACTCACAGGAATACCATGTAGTCATGCCATATCATGCTTTAG 780
consensus_6226#3      ------------------------------------------------------------
consensus_6226#1      TGATTGCAGACGCTGGCAACTCACAGGAATACCATGTAGTCATGCCATATCATGCTTTAG 780
consensus_6226#2      TGATTGCAGACGCTGGCAACTCACAGGAATACCATGTAGTCATGCCATATCATGCTTTAG 279
                                                                                  

consensus_6226#0      GAATGAAAGGATACAACCTGAGGACATGGTATCTCCATGCTACTCATTAGAGTCATTTCG 840
consensus_6226#3      ------------------------------------------------------------
consensus_6226#1      GAATGAAAGGATACAACCTGAGGACATGGTATCTCCATGCTACTCATTAGAGTCATTTCG 840
consensus_6226#2      GAATGAAAGGATACAACCTGAGGACATGGTATCTCCATGCTACTCATTAGAGTCATTTCG 339
                                                                                  

consensus_6226#0      TGCTGCATACAAATATAACATAGTGCCTTCAAGGGATCAATCTAAATGGGAAAAAATGAA 900
consensus_6226#3      ------------------------------------------------------------
consensus_6226#1      TGCTGCATACAAATATAACATAGTGCCTTCAAGGGATCAATCTAAATGGGAAAAAATGAA 900
consensus_6226#2      TGCTGCATACAAATATAACATAGTGCCTTCAAGGGATCAATCTAAATGGGAAAAAATGAA 399
                                                                                  

consensus_6226#0      TGGTGTAAATGTCCAACCTCCTAAATATGAAAAGAAAGTAGGGAGACCAAAGAAAACTAG 960
consensus_6226#3      ------------------------------------AGTATGGAGGCCAAAAGGAACTAG 24
consensus_6226#1      TGGTGTAAATGTCCAACCTCCTAAATATGAAAAGAAAGTAGGGAGACCAAAGAAAACTAG 960
consensus_6226#2      TGGTGTAAATGTCCAACCTCCTAAATATGAAAAGAAAGTAGGGAGACCAAAGAAAACTAG 459
                                                          **** **** *****   ******

consensus_6226#0      GAGGAAGCAATCCATTGAATTGGAGGGTGGTACAAAATTGTCCAAGCATGGCGTGGTTAT 1020
consensus_6226#3      GGGGAAGCAATCCCTTGAATTGGAGGGTGGTTCACAATTGTCCAAGCACGGCGGGGGTTT 84
consensus_6226#1      GAGGAAGCAATCCATTGAATTGGAGGGTGGTACAAAATTGTCCAAGCATGGCGTGGTTAT 1020
consensus_6226#2      GAGGAAGCAATCCATTGAATTGGAGGGTGGTACAAAATTGTCCAAGCATGGCGTGGTTAT 519
                      * *********** ***************** ** ************* **** ** * *

consensus_6226#0      TCATTGTAGTTATTGTGATGGGGCTGGACACAATAGGAATAATTGTGAATTACTTGGTAC 1080
consensus_6226#3      TCATAGTAGTTATTGTGATGGGGGTGGCCCACATAGGAATTATTGTGAATTCCTTGGTGC 144
consensus_6226#1      TCATTGTAGTTATTGTGATGGGGCTGGACACAATAGGAATAATTGTGAATTACTTGGTAC 1080
consensus_6226#2      TCATTGTAGTTATTGTGATGGGGCTGGACACAATAGGAATAATTGTGAATTACTTGGTAC 579
                      **** ****************** *** *   ******** ********** ****** *

consensus_6226#0      AACTAAAAAGATGAGACCAAAAAGG-AAGAGGAGTGTACAAGTAATGCAAGATGAC-AAA 1138
consensus_6226#3      ACCTAAAAAGATGAGGCCAAAAAGG-AAGAGGAGTGTTCAAGTAATGCAAGATGGC-AAA 202
consensus_6226#1      AACTAAAAAGATGAGACCAAGAAGG-AAGAGGAGTGTACAAGTAATGCAAGATGAC-AAA 1138
consensus_6226#2      ACCTAAAAAGATGAGACCAAAAAGGGAAGAGGAGTGTNCAAGTAATGCAAGATGACCAAA 639
                      * ************* **** **** *********** **************** * ***

consensus_6226#0      GATGTTTACATGAATGAGGTATAGTTAACTATATCCTTTATGTACTGTCACCTTCGGCAA 1198
consensus_6226#3      GATGTTTACATGAATGAGGTATAGTTAACTATATCCTTTATGTACTGTCACCTTCGGCAA 262
consensus_6226#1      GATGTTTACATGAATGAG------------------------------------------ 1156
consensus_6226#2      GATGTTTACATGAATGAG------------------------------------------ 657
                      ******************                                          

consensus_6226#0      GCATTTCTTAATCTTTTATGTCAAACGTTTCCAATTGTTCCAGAAGAATTAGTACAAGAG 1258
consensus_6226#3      GCATTTTTTAATTTTTTATGTCAAACGTTTCCAATTGTTCCAGAAGAATTAGTACAAGAG 322
consensus_6226#1      -------------------------------------------AAGAATTAGTACAAGAG 1173
consensus_6226#2      -------------------------------------------AAGAATTAGTACAAGAG 674
                                                                 *****************

consensus_6226#0      GG-CCAACATAGCACTTCAGTGTTGACTACTTTATTAGAACAGGTTAGTTGCATGCATGG 1317
consensus_6226#3      GG-CCAACATAGCCCTTCAGTGTTGGCTACTTTATTAGAACAGG---------------- 365
consensus_6226#1      GG-CCAACATAGCACTTCAGTGTTGACTACTTTATTAGAACAGG---------------- 1216
consensus_6226#2      GGGCCCACATAGCACTTCAGTGGTGACTACNTTATTAGAACAGG---------------- 718
                      ** ** ******* ******** ** **** *************                

consensus_6226#0      TTTAACATTTTTCACTGTCACTATCTGCTACCTACTCATGTTTCATACTAATTTGCTTGT 1377
consensus_6226#3      ------------------------------------------------------------
consensus_6226#1      ------------------------------------------------------------
consensus_6226#2      ------------------------------------------------------------
                                                                                  

consensus_6226#0      TAGGCAACATCAACTCAATCCTCCATTAACCAGCTAGGCCCTTTACCGGATTCAGTCTTC 1437
consensus_6226#3      ----CAACATCAACTCAATCCTCCATTAACCAGCTAGGCCCTTTACCGGATTCAGTTTTC 421
consensus_6226#1      ----CAACATCAACTCAATCCTCCATTAACCAGCTAGGCC-TTTACCGGATTCAGTCTTC 1271
consensus_6226#2      ----CAACATCAACTCAATCCTTCATTAANCAGCTAGGNCCTTTACCGGGNTCAGTCTTC 774
                          ****************** ****** ******** * ********  ***** ***

consensus_6226#0      ATTGAAGCTAATAGAAATACACTACCACAG-CCAAGAGCGACAACATCTACACA-CGTGG 1495
consensus_6226#3      ATTGAAGCTAATAGAAATTCCCTTCCACAG-CCAAGAGCGGCAACATCTACCCC-CGTGG 479
consensus_6226#1      ATTGAAGCTAATAGAAATACACTACCACAG-CCAAGAGCGACAACATCTACAC-ACGTGG 1329
consensus_6226#2      ATTGGAGCTTATAGAAA-ACNCTACCNCAGGNCAAGAGCGGCAACATTTTCCCCACGTGG 833
                      **** **** *******  * ** ** ***  ******** ****** * * *  *****

consensus_6226#0      GC-AGAGC-AAGGATGAAGAGAAGCAACACAAGATCAACAACGGCCAGATCATCTAGACC 1553
consensus_6226#3      GC-AGAGC-AAGGATGAAGAGAAGCAACCCAAGATCAACAACGGCCAGATTATTTAGGCC 537
consensus_6226#1      GC-AGAGC-AAGGATGAAGAGAAGCAACACAAGATCAACAACGGCCAGATCATCTAGACC 1387
consensus_6226#2      GCCAGAGCCAGGGNTGAAGAGAANCCNCCCCAGGNTC----------------------- 870
                      ** ***** * ** ********* *  * * **                           

consensus_6226#0      ACCTAGCCAGAAGAAAAAAAAA-TAGGAGTTATATGGGTGCTTTCTATCTTGTTTTTTCA 1612
consensus_6226#3      CCCTAGCCAGAAGAAAAAAAAAATAGAAGTTATATGGGTGCCTTCTATCTTGTTTTTTCA 597
consensus_6226#1      ACCTAGCCAGAAGAAAAAAAAAATAGAAGTTATATGGGTGCTTTCTATCTTGTTTTTTCA 1447
consensus_6226#2      ------------------------------------------------------------
                                                                                  

consensus_6226#0      ATGTTGCAAAATGCAAAATAAAAGGTGCACAATTCAACAATTGGATTTATTCCCCTTTTG 1672
consensus_6226#3      ATGTTGCAAAATGCAAAATAAAAGGTGCCCAATTCAACAATTGGATTTATTCCCCTTTTG 657
consensus_6226#1      ATGTTGCAAAATGCAAAATAAAAGGTGCACAATTCAACAATTGGATTTATTCCCCTTTTG 1507
consensus_6226#2      ------------------------------------------------------------
                                                                                  

consensus_6226#0      AAATTTATGGCTTTTGGTTAGTGGAACTTAGTGTTGACTGCTCATGGATGTTATCAGTTA 1732
consensus_6226#3      AAAAAAAAAAA------------------------------------------------- 668
consensus_6226#1      AAATTTATGGCTTTTGGTTAGTGGAACTTAGTGTTGACTGCTCATGGATGTTATCAGTTA 1567
consensus_6226#2      ------------------------------------------------------------
                                                                                  

consensus_6226#0      ATGTAAGATCGTTTTCTATGTGATTTTGAGATGTGGAACATCATTAAGAAATG 1785
consensus_6226#3      -----------------------------------------------------
consensus_6226#1      ATGTAAGATCGTTTTCTATGTGATTTTGAGATGTGGAACATCATTAAGAAATG 1620
consensus_6226#2      -----------------------------------------------------
                                                                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)