Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6227 cluster # 6227       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6227#0 length = 797 sequences # 4  

consensusID : consensus_6227#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 797
fasta sequence
                              [TACTAAAGGAATAGCTTGCGGCCGCTGCAACAT-CAGAATGGTACTTTTTTTTTGAATACGCGAGACGCACATTTTTGTATTAAGAGGAGTGGTAAATACAATCATATTATCAATCACATCTATTTGAGCCTTCATTTTTTTTT-CTTTTATACACTGGAAATGGATTACATTTAACATTAGGCACCTGACTCATGTTTGAACCTTCAAGGCAACTACATATGTCCTTTTCTCTAATCTCTAGTACAAGTTACTTGCAAGTTGCAACTATCAACTATGTAAAGCATCTGGCTAGTAGAGAAGGAAGCTGGGGTCGACTTCCTTGGCCCAGGACTCAAACCCACCGGCGACGTCGCTCGCATACAGGAACCCATTCTCGCGGAGGATCTGCACGGCGACCTGGGAGTCATTGCCTCGCCGGCAGATGACGTACACAGGGCAGTGCTGCCGCCCGTCGCGCCGCGACGACACTTCCCTCGCCGAGTCCCGCAGCAGTGGCAGCTTATCCTCCAGCAGCGAGAGCGGGACGTTGATGGAGTGAGCCATGGACGCTATCTGAAAATGGTGCGACGGCCGCACGTCCACCAGCAGGTGCGGCCTGCCGCTGTCGAGCACCTTCTTGTAGTCTCTGCAGCTCACCCGGGCGTTCTCCGGGAGAAGATTCAAGCTCCACGTCGTCGAATTTTTGGACATTGGAGATTGTGTGAAGCTCTCGTAATCAAAGTTCACGAAGTCCTCTTTGGTGAAAACAGGATTTTCTCCACAGACCTTGC-AAGTTGGTGAACTCCTACTGATCTTGA]

[+] EMBL BI305379             [TACTAAAGGAATAGCTTGCGGCCGCTGCAACATCCAGAATGGTACTTTTTTTTTGAATACGCTAGACGCACATTTTTGTGTTAAGAGGAGTGGGAGATACAATCATATTATCAATCACATCTATTTGAGCCTTCATTTTTTTTTACTTTTATACACTGGAAATGGATTACATTTAACATTAGGCACCTGACTCATGTTTGAACCTTCAAGGCAACTACATATGTCCTTTTCTCTAATCTATAGTACAAGTTACTTGCAAGTTGCAACTATCAACTATGTAAAGCATCTGGCTAGTATAGAAGGAAGCTGGGGTCGACTTCCTTGGCCCAGGACTCAAACCCACCGGCGACGTCGCTCGCATACAGGAACCCATTCTCGCGGAGGATCTGCACGGCGACCTGGGAGTCATTGCCTCGCCGGCAGATGACGTACACAGGGCAGTGCTGCCGCCCGTAGCGCCGCGACGACACTTCCCTCGCCGAGTGCCGCAGCAGTGGCAGCTTATCCTCCAGCAGCGAGAGCGGGACGTTGATGGAGTGAGCCATGGACGCTATCTGAAAATGGTGCGACGGCCGCACGTCCACCAACAGGTGCGGCCTGCCGCTGTCGAGCACCTTCTTGTACTCTCTGCAGCTCACCCGGGCGTTCTCCGGGAGAAGATTCACGCTCCACGTCGACAAATTTTTGGACATTGGAGATTGTGTGA                                                                                              ]
[+] EMBL BI305313             [          agncgTTGCGGCCGCTGCAACAT CAGAATGGTACTTTTTTTTTGAATACGCGAGACGCACATTTTTGTATTAAGAGGAGTGGTAAATACAATCATATTATCAATCACATCTATTTGAGCCTTCATTTTTTTTT CTTTTATACACTGGAAATGGATTACATTTAACATTAGGCACCTGACTCATGTTTGAACCTTCAAGGCAACTACATATGTCCTTTTCTCTAATCTCTAGTACAAGTTACTTGCAAGTTGCAACTATCAACTATGTAAAGCATCTGGCTAGTAGAGAAGGAAGCTGGGGTCGACTTCCTTGGCCCAGGACTCAAACCCACCGGCGACGTCGCTCGCATACAGGAACCCATTCTCGCGGAGGATCTGCACGGCGACCTGGGAGTCATTGCCTCGCCGGCAGATGACGTACACAGGGCAGTGCTGCCGCCCGTCGCGCCGCGACGACACTTCCCTCGCCGAGTCCCGCAGCAGTGGCAGCTTATCCTCCAGCAGCGAGAGCGGGACGTTGATGGAGTGAGCCATGGACGCTATCTGAAAATGGTGCGACGGCCGCACGTCCACCAGCAGGTGCGGCCTGCCGCTGTCGAGCACCTTCTTGTAGTCTCTGCAGCTCACCCGGGCGTTCTCCGGGAGAAGATTCAAGCTCCACGTCGTCGAATTTTTGGACATTGGAGATTGTGTGAAGCTCTCGTAATCAAAGTTCACGAAGTCCTCTTTGGTGAAAACAGGATTTTCTCCACAGACCTTGC AAGTTGGTGAACTCCTACTGATCTTGA]
[+] EMBL BI305218             [                                  CAG ATGGTACTTTTTTTTTGAATACGCGAGACGCACATTTTTGTATTAAGAGGAGTGGTAAATACAATCATATTATCAATCACATCTATTTGAGCCTTCATTTTTTTTT CTTTTATACACTGGAAATGGATTACATTTAACATTAGGCACCTGACTCATGTTTGAACCTTCAAGGCAACTACATATGTCCTTTTCTCTAATCTCTAGTACAAGTTACTTGCAAGTTGCAACTATCAACTATGTAAAGCATCTGGCTAGTAGAGAAGGAAGCTGGGGTCGACTTCCTTGGCCCAGGACTCAAACCCACCGGCGACGTCGCTCGCATACAGGAACCCATTCTCGCGGAGGATCTGCACGGCGACCTGGGAGTCATTGCCTCGCCGGCAGATGACGTACACAGGGCAGTGCTGCCGCCCGTCGCGCCGCGACGACACTTCCCTCGCCGAGTCCCGCAGCAGTGGCAGCTTATCCTCCAGCAGCGAGAGCGGGACGTTGATGGAGTGAGCCATGGACGCTATCTGAAAATGGTGCGACGGCCGCACGTCCACCAGCAGGTGCGGCCTGCCGCTGTCGAGCACCTTCTTGTAGTCTCTGCAGCTCACCCGGGCGTTCTCCGGGAGAAGATTCAAGCTCCACGTTGTCGAATTTGTGGACATTGGAGATTGTGTGAAGCTCTCGTCATCAAAGGTCACGAAGTCCTATTTGGTGAAAACAGGATTTTCT                                         ]
[+] EMBL BI305252             [                                    nAATGGTACTTTTTTTTTGAATACGCGAGACGCACATTTTTGTATTAAGAGGAGTGGTAAATACAATCATATTATCAATCACATCTATTTGAGCCTTCATTTTTTTTT CTTTTATACACTGGAAATGGATTACATTTAACATTAGGCACCTGACTCATGTTTGAACCTTCAAGGCAACTACATATGTCCTTTTCTCTAATCTCTAGTACAAGTTACTTGCAAGTTGCAACTATCAACTATGTAAAGCATCTGGCTAGTAGAGAAGGAAGCTGGGGTCGACTTCCTTGGCCCAGGACTCAAACCCACCGGCGACGTCGCTCGCATACAGGAACCCATTCTCGCGGAGGATCTGCACGGCGACCTGGGAGTCATTGCCTCGCCGGCAGATGACGTACACAGGGCAGTGCTGCCGCCCGTCGCGCCGCGACGACACTTCCCTCGCCGAGTCCCGCAGCAGTGGCAGCTTATCCTCCAGCAGCGAGAGCGGGACGTTGATGGAGTGAGCCATGGACGCTATCTGAAAATGGTGCGACGGCCGCACGTCCACCAGCAGGTGCGGCCTGCCGCTGTCGAGCACCTTCTTGTAGTCTCTGCAGCTCACCCGGGCGTTCTCCGGGAGAAGATTCAGGCTCCACGTCGTCGAATTTTTGGACATTGGAGATTGTGTGAAGCTCTCGTAATCAAAGTTCACGAAGTCCTCTTTGGTGAAAACAGGATTTTCTCCACAGACCTTGCAAAGTTGGTGAACTCCTACTG       ]


>consensus_6227#0 TACTAAAGGAATAGCTTGCGGCCGCTGCAACATCAGAATGGTACTTTTTTTTTGAATACG CGAGACGCACATTTTTGTATTAAGAGGAGTGGTAAATACAATCATATTATCAATCACATC TATTTGAGCCTTCATTTTTTTTTCTTTTATACACTGGAAATGGATTACATTTAACATTAG GCACCTGACTCATGTTTGAACCTTCAAGGCAACTACATATGTCCTTTTCTCTAATCTCTA GTACAAGTTACTTGCAAGTTGCAACTATCAACTATGTAAAGCATCTGGCTAGTAGAGAAG GAAGCTGGGGTCGACTTCCTTGGCCCAGGACTCAAACCCACCGGCGACGTCGCTCGCATA CAGGAACCCATTCTCGCGGAGGATCTGCACGGCGACCTGGGAGTCATTGCCTCGCCGGCA GATGACGTACACAGGGCAGTGCTGCCGCCCGTCGCGCCGCGACGACACTTCCCTCGCCGA GTCCCGCAGCAGTGGCAGCTTATCCTCCAGCAGCGAGAGCGGGACGTTGATGGAGTGAGC CATGGACGCTATCTGAAAATGGTGCGACGGCCGCACGTCCACCAGCAGGTGCGGCCTGCC GCTGTCGAGCACCTTCTTGTAGTCTCTGCAGCTCACCCGGGCGTTCTCCGGGAGAAGATT CAAGCTCCACGTCGTCGAATTTTTGGACATTGGAGATTGTGTGAAGCTCTCGTAATCAAA GTTCACGAAGTCCTCTTTGGTGAAAACAGGATTTTCTCCACAGACCTTGCAAGTTGGTGA ACTCCTACTGATCTTGA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)