These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6228#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1170 fasta sequence [GCAAATTCGTTAAAATCCCCTTTTGGGAATCTTCGGCCTCCCCAGCGGCAGGCAGGCAGCGCGGCGGCACGGCAGCCTCTCTCCCCTCCTCCTCCTGCTGCCCGCGTCCCCCCTTTACCTCGCATCCGCCGCGGATCTCCGCCTCTCCCGCCATGATGGACCTGGATCCCCGCCTCTACGAGAACGTCTCCGTGAGTGATAACGATGTCCGCAACATAGTGTTGTCTTATCTTATGCACAACTGTTTTAAGGAGACTGCTGAGACATTCTTATCCAGCACTGGTTTGGAACTGCCTGTTGATTACACTGTAGATGTAGATAAGCGTAAAGCGATTTTTAGTTTTGTGTTGGAAGGCAATGCCCTGAAGGCTATAGACCTGAC-AGAAGAGTTGGCACCTAACTTGCTAGAGAATGATATGGATTTGC-ATTTTGATCTTTTAAGTCTTCACTTCATTGAGTTAGTTCGTTCTAGAAAATGCACAGAAGCTCTTGAGTTTGGTCAGAAAAAGTTGACGCCATTTGGGAAAGTGCCCAAGTACGTTGAGAAACTAGAGGACTTTATGGCCCTCCTAGCTTATGAAGAGCCTGAGAAGTCACCTATGTTTCATCTACTAAGCCCAGAGTACAGGCAGAATGTTGCAGATAGCTTGAATCGGGCTGTTCTTGCACATGCTAATCGACCAGCATATTCATCATTGGAGAGAGTGATACAGCAAGCAACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAGGATTCTTACCCGCCATTTTCTTTGAAGGCCTTTCTGAACAAGTAAGGTGCAACCAATCAATCGTTAGAAAGATCACCTCCAGGGCTCCAGTCCTATGGCCACCAGAGTTCCCTTCAGAATGTGTAAAACAGTTGCGTGAAAGCAAGCGACGGGATGCTCATGCACATATTATTCAGAGAACCGCCTTCTGGATTAAACGATATCATCAGTGGTGTACCAACAATATCATCTGCATCGAAAGAGGAATGTTGTATAACTGTTGTTTCCTCATTTACAGTTCCCCATTTCCCCTTTACCCGTTGACGCCATCGAAAGTTGTACATATCAGAACCTTGAGCTATTCTGTATGTTCGTGCAGAGATATCGTCAGTTTGAACCAATCTGCAGTGCACTTATTACTATGCCTGATGCT] [+] EMBL AK122081 [GCAAATTCGTTAAAATCCCCTTTTGGGAATCTTCGGCCTCCCCAGCGGCAGGCAGGCAGCGCGGCGGCACGGCAGCCTCTCTCCCCTCCTCCTCCTGCTGCCCGCGTCCCCCCTTTACCTCGCATCCGCCGCGGATCTCCGCCTCTCCCGCCATGATGGACCTGGATCCCCGCCTCTACGAGAACGTCTCCGTGAGTGATAACGATGTCCGCAACATAGTGTTGTCTTATCTTATGCACAACTGTTTTAAGGAGACTGCTGAGACATTCTTATCCAGCACTGGTTTGGAACTGCCTGTTGATTACACTGTAGATGTAGATAAGCGTAAAGCGATTTTTAGTTTTGTGTTGGAAGGCAATGCCCTGAAGGCTATAGACCTGAC AGAAGAGTTGGCACCTAACTTGCTAGAGAATGATATGGATTTGC ATTTTGATCTTTTAAGTCTTCACTTCATTGAGTTAGTTCGTTCTAGAAAATGCACAGAAGCTCTTGAGTTTGGTCAGAAAAAGTTGACGCCATTTGGGAAAGTGCCCAAGTACGTTGAGAAACTAGAGGACTTTATGGCCCTCCTAGCTTATGAAGAGCCTGAGAAGTCACCTATGTTTCATCTACTAAGCCCAGAGTACAGGCAGAATGTTGCAGATAGCTTGAATCGGGCTGTTCTTGCACATGCTAATCGACCAGCATATTCATCATTGGAGAGAGTGATACAGCAAGCAACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAGGATTCTTACCCGCCATTTTCTTTGAAGGCCTTTCTGAACAAGTAAGGTGCAACCAATCAATCGTTAGAAAGATCACCTCCAGGGCTCCAGTCCTATGGCCACCAGAGTTCCCTTCAGAATGTGTAAAACAGTTGCGTGAAAGCAAGCGACGGGATGCTCATGCACATATTATTCAGAGAACCGCCTTCTGGATTAAACGATATCATCAGTGGTGTACCAACAATATCATCTGCATCGAAAGAGGAATGTTGTATAACTGTTGTTTCCTCATTTACAGTTCCCCATTTCCCCTTTACCCGTTGACGCCATCGAAAGTTGTACATATCAGAACCTTGAGCTATTCTGTATGTTCGTGCAGAGATATCGTCAGTTTGAACCAATCTGCAGTGCACTTATTACTATGCCTGATG ] [+] EMBL OSS14217A [ CCCCTTTTGGGAATCTTCGGCCTCCCCAGCGGCAGGCAGGCAGCGCGGCTGCACGGCAGCCTCTCTCCCCTCCTCCTCCTGCTNCCCGCGTCCCCCCTTTACCTCGCATCCNCCGCGGATCTCCGNCTCTCCCGCCATGATGGACCTGGATCCCCGCCTCTACGAGAACGTCTCCGTGAGTGATAACGATGTCCGCAACATAGTGTTGTCTTATCTTATGCACAACTGTTTTAAGGAGACTGCTGAGACATTCTTATCCAGCACTGGTTTGGAACTGCCTGTTGATTACACTGTAGATGTAGATAAGCGTAAAG GATTTTTAGTTTTGTGTTGGAAGGCAATG CCTGAAGGCTATAGACCTGACAAGAAGAGTTGGCACCTAACTTGCTAGAGAATGATATGGATTTGCAATTTTGATCTTTTAAGNCTTCACTTCA ] [+] EMBL AK060390 [ ATCTTCGGCCTCCCCAGCGGCAGGCAGGCAGCGCGGCGGCACGGCAGCCTCTCTCCCCTCCTCCTCCTGCTGCCCGCGTCCCCCCTTTACCTCGCATCCGCCGCGGATCTCCGCCTCTCCCGCCATGATGGACCTGGATCCCCGCCTCTACGAGAACGTCTCCGTGAGTGATAACGATGTCCGCAACATAGTGTTGTCTTATCTTATGCACAACTGTTTTAAGGAGACTGCTGAGACATTCTTATCCAGCACTGGTTTGGAACTGCCTGTTGATTACACTGTAGATGTAGATAAGCGTAAAGCGATTTTTAGTTTTGTGTTGGAAGGCAATGCCCTGAAGGCTATAGACCTGAC AGAAGAGTTGGCACCTAACTTGCTAGAGAATGATATGGATTTGC ATTTTGATCTTTTAAGTCTTCACTTCATTGAGTTAGTTCGTTCTAGAAAATGCACAGAAGCTCTTGAGTTTGGTCAGAAAAAGTTGACGCCATTTGGGAAAGTGCCCAAGTACGTTGAGAAACTAGAGGACTTTATGGCCCTCCTAGCTTATGAAGAGCCTGAGAAGTCACCTATGTTTCATCTACTAAGCCCAGAGTACAGGCAGAATGTTGCAGATAGCTTGAATCGGGCTGTTCTTGCACATGCTAATCGACCAGCATATTCATCATTGGAGAGAGTGATACAGCAAGCAACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAGGATTCTTACCCGCCATTTTCTTTGAAGGCCTTTCTGAACAAGTAAGGTGCAACCAATCAATCGTTAGAAAGATCACCTCCAGGGCTCCAGTCCTATGGCCACCAGAGTTCCCTTCAGAATGTGTAAAACAGTTGCGTGAAAGCAAGCGACGGGATGCTCATGCACATATTATTCAGAGAACCGCCTTCTGGATTAAACGATATCATCAGTGGTGTACCAACAATATCATCTGCATCGAAAGAGGAATGTTGTATAACTGTTGTTTCCTCATTTACAGTTCCCCATTTCCCCTTTACCCGTTGACGCCATCGAAAGTTGTACATATCAGAACCTTGAGCTATTCTGTATGTTCGTGCAGAGATATCGTCAGTTTGAACCAATCTGCAGTGCACTTATTACTATGCCTGATGCT] consensusID : consensus_6228#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 869 fasta sequence [GCGGCACGGCAGCCTCTCTCCCCTCCTCCTCCTGCTGCCCGCGTCCCCCCTTTACCTCGCATCCGCCGCGGATCTCCGCCTCTCCCGCCATGATGGACCTGGATCCCCGCCTCTACGAGAACGTCCGATTTTTAGTTTTGTGTTGGAAGGCAATGCCCTGAAGGCTATAGACCTGACAGAAGAGTTGGCACCTAACTTGCTAGAGAATGATATGGATTTGCATTTTGATCTTTTAAGTCTTCACTTCATTGAGTTAGTTCGTTCTAGAAAATGCACAGAAGCTCTTGAGTTTGGTCAGAAAAAGTTGACGCCATTTGGGAAAGTGCCCAAGTACGTTGAGAAACTAGAGGACTTTATGGCCCTCCTAGCTTATGAAGAGCCTGAGAAGTCACCTATGTTTCATCTACTAAGCCCAGAGTACAGGCAGAATGTTGCAGATAGCTTGAATCGGGCTGTTCTTGCACATGCTAATCGACCAGCATATTCATCATTGGAGAGAGTGATACAGCAAGCAACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAGGATTCTTACCCGCCATTTTCTTTGAAGGCCTTTCTGAACAAGTAAGGTGCAACCAATCAATCGTTAGAAAGATCACCTCCAGGGCTCCAGTCCTATGGCCACCAGAGTTCCCTTCAGAATGTGTAAAACAGTTGCGTGAAAGCAAGCGACGGGATGCTCATGCACATATTATTCAGAGAACCGCCTTCTGGATTAAACGATATCATCAGTGGTGTACCAACAATATCATCTGCATCGAAAGAGGAATGTTGTATAACTGTTGTTTCCTCATTTACAGTTCCCCATTTCCCCTTTNACCGTTGACGCCATCGAAAGT] [+] EMBL CB660611 [GCGGCACGGCAGCCTCTCTCCCCTCCTCCTCCTGCTGCCCGCGTCCCCCCTTTACCTCGCATCCGCCGCGGATCTCCGCCTCTCCCGCCATGATGGACCTGGATCCCCGCCTCTACGAGAACGTCCGATTTTTAGTTTTGTGTTGGAAGGCAATGCCCTGAAGGCTATAGACCTGACAGAAGAGTTGGCACCTAACTTGCTAGAGAATGATATGGATTTGCATTTTGATCTTTTAAGTCTTCACTTCATTGAGTTAGTTCGTTCTAGAAAATGCACAGAAGCTCTTGAGTTTGGTCAGAAAAAGTTGACGCCATTTGGGAAAGTGCCCAAGTACGTTGAGAAACTAGAGGACTTTATGGCCCTCCTAGCTTATGAAGAGCCTGAGAAGTCACCTATGTTTCATCTACTAAGCCCAGAGTACAGGCAGAATGTTGCAGATAGCTTGAATCGGGCTGTTCTTGCACATGCTAATCGACCAGCATATTCATCATTGGAGAGAGTGATACAGCAAGCAACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAGGATTCTTACCCGCCATTTTCTTTGAAGGCCTTTCTGAACAAGTAAGGTGCAACCAATCAATCGTTAGAAAGATCACCTCCAGGGCTCCAGTCCTATGGCCACCAGAGTTCCCTTCAGAATGTGTAAAACAGTTGCGTGAAAGCAAGCGACGGGATGCTCATGCACATATTATTCAGAGAACCGCCTTCTGGATTAAACGATATCATCAGTGGTGTACCAACAATATCATCTGCATCGAAAGAGGAATGTTGTATAACTGTTGTTTCCTCATTTACAGTTCCCCATTTCCCCTTTNACCGTTGACGCCATCGAAAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6228#0 GCAAATTCGTTAAAATCCCCTTTTGGGAATCTTCGGCCTCCCCAGCGGCAGGCAGGCAGC 60 consensus_6228#1 ------------------------------------------------------------ consensus_6228#0 GCGGCGGCACGGCAGCCTCTCTCCCCTCCTCCTCCTGCTGCCCGCGTCCCCCCTTTACCT 120 consensus_6228#1 ---GCGGCACGGCAGCCTCTCTCCCCTCCTCCTCCTGCTGCCCGCGTCCCCCCTTTACCT 57 ********************************************************* consensus_6228#0 CGCATCCGCCGCGGATCTCCGCCTCTCCCGCCATGATGGACCTGGATCCCCGCCTCTACG 180 consensus_6228#1 CGCATCCGCCGCGGATCTCCGCCTCTCCCGCCATGATGGACCTGGATCCCCGCCTCTACG 117 ************************************************************ consensus_6228#0 AGAACGTCTCCGTGAGTGATAACGATGTCCGCAACATAGTGTTGTCTTATCTTATGCACA 240 consensus_6228#1 AGAACGTC---------------------------------------------------- 125 ******** consensus_6228#0 ACTGTTTTAAGGAGACTGCTGAGACATTCTTATCCAGCACTGGTTTGGAACTGCCTGTTG 300 consensus_6228#1 ------------------------------------------------------------ consensus_6228#0 ATTACACTGTAGATGTAGATAAGCGTAAAGCGATTTTTAGTTTTGTGTTGGAAGGCAATG 360 consensus_6228#1 ------------------------------CGATTTTTAGTTTTGTGTTGGAAGGCAATG 155 ****************************** consensus_6228#0 CCCTGAAGGCTATAGACCTGACAGAAGAGTTGGCACCTAACTTGCTAGAGAATGATATGG 420 consensus_6228#1 CCCTGAAGGCTATAGACCTGACAGAAGAGTTGGCACCTAACTTGCTAGAGAATGATATGG 215 ************************************************************ consensus_6228#0 ATTTGCATTTTGATCTTTTAAGTCTTCACTTCATTGAGTTAGTTCGTTCTAGAAAATGCA 480 consensus_6228#1 ATTTGCATTTTGATCTTTTAAGTCTTCACTTCATTGAGTTAGTTCGTTCTAGAAAATGCA 275 ************************************************************ consensus_6228#0 CAGAAGCTCTTGAGTTTGGTCAGAAAAAGTTGACGCCATTTGGGAAAGTGCCCAAGTACG 540 consensus_6228#1 CAGAAGCTCTTGAGTTTGGTCAGAAAAAGTTGACGCCATTTGGGAAAGTGCCCAAGTACG 335 ************************************************************ consensus_6228#0 TTGAGAAACTAGAGGACTTTATGGCCCTCCTAGCTTATGAAGAGCCTGAGAAGTCACCTA 600 consensus_6228#1 TTGAGAAACTAGAGGACTTTATGGCCCTCCTAGCTTATGAAGAGCCTGAGAAGTCACCTA 395 ************************************************************ consensus_6228#0 TGTTTCATCTACTAAGCCCAGAGTACAGGCAGAATGTTGCAGATAGCTTGAATCGGGCTG 660 consensus_6228#1 TGTTTCATCTACTAAGCCCAGAGTACAGGCAGAATGTTGCAGATAGCTTGAATCGGGCTG 455 ************************************************************ consensus_6228#0 TTCTTGCACATGCTAATCGACCAGCATATTCATCATTGGAGAGAGTGATACAGCAAGCAA 720 consensus_6228#1 TTCTTGCACATGCTAATCGACCAGCATATTCATCATTGGAGAGAGTGATACAGCAAGCAA 515 ************************************************************ consensus_6228#0 CTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAGGATTCTTACCCGCCATTTTCTT 780 consensus_6228#1 CTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAGGATTCTTACCCGCCATTTTCTT 575 ************************************************************ consensus_6228#0 TGAAGGCCTTTCTGAACAAGTAAGGTGCAACCAATCAATCGTTAGAAAGATCACCTCCAG 840 consensus_6228#1 TGAAGGCCTTTCTGAACAAGTAAGGTGCAACCAATCAATCGTTAGAAAGATCACCTCCAG 635 ************************************************************ consensus_6228#0 GGCTCCAGTCCTATGGCCACCAGAGTTCCCTTCAGAATGTGTAAAACAGTTGCGTGAAAG 900 consensus_6228#1 GGCTCCAGTCCTATGGCCACCAGAGTTCCCTTCAGAATGTGTAAAACAGTTGCGTGAAAG 695 ************************************************************ consensus_6228#0 CAAGCGACGGGATGCTCATGCACATATTATTCAGAGAACCGCCTTCTGGATTAAACGATA 960 consensus_6228#1 CAAGCGACGGGATGCTCATGCACATATTATTCAGAGAACCGCCTTCTGGATTAAACGATA 755 ************************************************************ consensus_6228#0 TCATCAGTGGTGTACCAACAATATCATCTGCATCGAAAGAGGAATGTTGTATAACTGTTG 1020 consensus_6228#1 TCATCAGTGGTGTACCAACAATATCATCTGCATCGAAAGAGGAATGTTGTATAACTGTTG 815 ************************************************************ consensus_6228#0 TTTCCTCATTTACAGTTCCCCATTTCCCCTTTACCCGTTGACGCCATCGAAAGTTGTACA 1080 consensus_6228#1 TTTCCTCATTTACAGTTCCCCATTTCCCCTTTNACCGTTGACGCCATCGAAAGT------ 869 ******************************** ******************** consensus_6228#0 TATCAGAACCTTGAGCTATTCTGTATGTTCGTGCAGAGATATCGTCAGTTTGAACCAATC 1140 consensus_6228#1 ------------------------------------------------------------ consensus_6228#0 TGCAGTGCACTTATTACTATGCCTGATGCT 1170 consensus_6228#1 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||