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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6239#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1358 fasta sequence
[GGGTGGCCGACGGACGTGCGCCACGTGGCGCACGTCACCTTCGACCGCTTCCATGGCTTCCTCGGCCTCCCCGTCGAGTTCGAGGTCGAGATGCCATGCCGCGTCCCCAGCGCTAGTGCTAGTGTTTTTGGTGTCTCGGCTGAATCGATGCAGTGCACCTACGATGGGAAGGGAAACTCAGTCCCCACTATACTGCTGCACATGCAGGAGAGGTTGTATGCTCAGGGAGGCCTAAAGGCTGAAGGAATCTTTCGCATAAACCCGGAAAATGACCAAGAGGAGCATGTGAGGGACCAGCTGAACAAAGGAGTTGTCCCTGAGGACATTGATGTTCACTGTTTGGCAAGCCTGATTAAGGCATGGTTCAGGGAACTTCCAGAAGGTGTGCTTGATAGCCTCTCCCCTGAACAAGTGCTACAGTGCAATTCTGAAGGAGAATTCCTAGAGCTCGTGACGCTATTGCGCCCGACTCAGGCAGCGCTCCTCAATTGGGCTGTTGAACTGATGGCTGACGTTGTCGAAGAGGAGGAGCTGAACAAGATGAATGCTAGGAACATAGCCATGGTGTTTGCCCCCAACATGACTCAGATGTCAGATCCTTTGACAGCCCTAATGCATGCTGTCCAAGTCATGAACTTCCTCAAGACATTGATCTTGAGGACACTTCGAGAGCGTGACGATGCAGCTAGCGGAGATTACACTCCATACTCATCTCCAGCTTCATCCAGTCAGCAAAACGATGCTGAGTACTATGGCAGTGAGAGAGACATGGACAGAAGCTGTGAAATGAGTGATATGCATAGCGAGATCAGCAGGTCTGGTCGACAGGTGGATTTTCTGGTGAGGTACAACACCTGCTTCGACAGCGAGCAAGAAGGCGTCGATCCTCTGAGCGACGTCGAAGAAGGGTTCTTGAGACAGCTCGAACACGATCTCGAAGCGGATAAACGAGAGGAGAGCGCGAAAAAGCAGCACGAAATAAGTTCAGAGATCATGGCTGTGAAGGATGTTCAAGCTGAGCTGAAAGTTGAAGCCAAAGCAGCAGGGAACACACAGAAGGAAGAAGGTGCAGGGTCTTTGCAATGATGAAGTTCATGTGTTTTTTGAGCTTCTAGATCTCATGATTTACTGTGCTAGATTGTTTTCTCAACATATGGTTGAGTGTAGTGCCCAATGGTTGTTGACTGTAGTGCATCATGTAAACTTAGCTGATCTTTTTATCCTTGGATGTGGGTGACAATTAGTGTGTATGTCAATGTTACTATGCCTAAGCGTAGTTTCGTGCGATCTGGG-AATGTTGTTTGTTGCAAAACAGCATCAAAAAAAAAAAAACACTGTCATGCTGNATCGNTGCGTAT]
[+] EMBL AY364310 [GGGTGGCCGACGGACGTGCGCCACGTGGCGCACGTCACCTTCGACCGCTTCCATGGCTTCCTCGGCCTCCCCGTCGAGTTCGAGGTCGAGATGCCATGCCGCGTCCCCAGCGCTAGTGCTAGTGTTTTTGGTGTCTCGGCTGAATCGATGCAGTGCACCTACGATGGGAAGGGAAACTCAGTCCCCACTATACTGCTGCACATGCAGGAGAGGTTGTATGCTCAGGGAGGCCTAAAGGCTGAAGGAATCTTTCGCATAAACCCGGAAAATGACCAAGAGGAGCATGTGAGGGACCAGCTGAACAAAGGAGTTGTCCCTGAGGACATTGATGTTCACTGTTTGGCAAGCCTGATTAAGGCATGGTTCAGGGAACTTCCAGAAGGTGTGCTTGATAGCCTCTCCCCTGAACAAGTGCTACAGTGCAATTCTGAAGGAGAATTCCTAGAGCTCGTGACGCTATTGCGCCCGACTCAGGCAGCGCTCCTCAATTGGGCTGTTGAACTGATGGCTGACGTTGTCGAAGAGGAGGAGCTGAACAAGATGAATGCTAGGAACATAGCCATGGTGTTTGCCCCCAACATGACTCAGATGTCAGATCCTTTGACAGCCCTAATGCATGCTGTCCAAGTCATGAACTTCCTCAAGACATTGATCTTGAGGACACTTCGAGAGCGTGACGATGCAGCTAGCGGAGATTACACTCCATACTCATCTCCAGCTTCATCCAGTCAGCAAAACGATGCTGAGTACTATGGCAGTGAGAGAGACATGGACAGAAGCTGTGAAATGAGTGATATGCATAGCGAGATCAGCAGGTCTGGTCGACAGGTGGATTTTCTGGTGAGGTACAACACCTGCTTCGACAGCGAGCAAGAAGGCGTCGATCCTCTGAGCGACGTCGAAGAAGGGTTCTTGAGACAGCTCGAACACGATCTCGAAGCGGATAAACGAGAGGAGAGCGCGAAAAAGCAGCACGAAATAAGTTCAGAGATCATGGCTGTGAAGGATGTTCAAGCTGAGCTGAAAGTTGAAGCCAAAGCAGCAGGGAACACACAGAAGGAAGAAGGTGCAGGGTCTTTGCAATGATGAAGTTCATGTGTTTTTTGAGCTTCTAGATCTCATGATTTACTGTGCTAGATTGTTTTCTCAACATATGGTTGAGTGTAGTGCCCAATGGTTGTTGACTGTAGTGCATCATGTAAACTTAGCTGATCTTTTTATCCTTGGATGTGGGTGACAATTAGTGTGTATGTCAATGTTACTATGCCTAAGCGTAGTTTCGTGCGATCTGGG AATGTTGTTTGTTGCATATCTGCATCAAAAAAAAAAAA ]
[-] EMBL CF330947 [ CAACATATGGTTGAGTGTAGTGCCCAATGGTTGTTGACTGTAGTGCATCATGTAAACTTAGCTGATCTTTTTATCCTTGGATGTGGGTGACAATTAGTGTGTATGTCAATGTTACTATGCCTAAGCGTAGTTTCGTGCGATCTGGGAAATGTTGTTTGTTGCAAAAaaa ]
[+] EMBL CF330948 [ tAACATATGGTTGAGTGTAGTGCCCAATGGTTGTTGACTGTAGTGCATCATGTAAACTTAGCTGATCTTTTTATCCTTGGATGTGGGTGACAATTAGTGTGTATGTCAATGTTACTATGCCTAAGCGTAGTTTCGTGCGATCTGGG ATTGTTGTTTGTTGCAAAA A A AAAAAAAAAAAAACACTGTCATGCTGNATCGNTGCGTAT]
consensusID : consensus_6239#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence
[AGCAAAACCGATCCTTGAGTACTGTGGCCGGTGAGAGAGCCCATGCCCACAACCTGTGGGTTGAGTGATATGCATAGCGAGATCAGCAGGTCTGTTCCCCAGGTGGATTTTTTGGTGAGGTACAACGCATGCTTCGACAACGAGCAAGAAGGCGTCGATCCTTTGACGCACGTCGAAGAAGGGTTCTTGAGACAGCTCGAACACGATCTCGAAGCGGATAAACGAGAGGAGAGCGCGAAAAAGCAGCCCGAAATAAGTTCAGAGATCATGGCTGTGAAGGATGTTCAAGCTGAGCTGAAAGTTTAAGCCAAAGCAGCAGGGAACACACAGAAGGAAGAAGGTGCAGGGTCTTTGCAATGATGAAGTTCATGTGTTTTTTGAACTTCTAGATCTCATGATTTACTGTGCTAGATTGTTTTCTCAACATATGGTTGAGTGTAGTGCCCAATGGTTGTTGACTGTAGTGCATCATGTAAACTTAGCTGATCTTTTTATCCTGGGATGTGGGTGACAATTAGTGTGTATGTCAATGTTACTATGCCTAAGGGTAGTTTCATGCGATCTGGGAATGTTGTTTGTTGCATATCTGCATCAATGTCTTGAATCTCCAAGTGATGATTTAAATTGTTGTAAGTTGTAACAAACCAAATTTTCCCTTAAAAAAAAAAAAAAAAAA]
[-] EMBL CA760433 [AGCAAAACCGATCCTTGAGTACTGTGGCCGGTGAGAGAGCCCATGCCCACAACCTGTGGGTTGAGTGATATGCATAGCGAGATCAGCAGGTCTGTTCCCCAGGTGGATTTTTTGGTGAGGTACAACGCATGCTTCGACAACGAGCAAGAAGGCGTCGATCCTTTGACGCACGTCGAAGAAGGGTTCTTGAGACAGCTCGAACACGATCTCGAAGCGGATAAACGAGAGGAGAGCGCGAAAAAGCAGCCCGAAATAAGTTCAGAGATCATGGCTGTGAAGGATGTTCAAGCTGAGCTGAAAGTTTAAGCCAAAGCAGCAGGGAACACACAGAAGGAAGAAGGTGCAGGGTCTTTGCAATGATGAAGTTCATGTGTTTTTTGAACTTCTAGATCTCATGATTTACTGTGCTAGATTGTTTTCTCAACATATGGTTGAGTGTAGTGCCCAATGGTTGTTGACTGTAGTGCATCATGTAAACTTAGCTGATCTTTTTATCCTGGGATGTGGGTGACAATTAGTGTGTATGTCAATGTTACTATGCCTAAGGGTAGTTTCATGCGATCTGGGAATGTTGTTTGTTGCATATCTGCATCAATGTCTTGAATCTCCAAGTGATGATTTAAATTGTTGTAAGTTGTAACAAACCAAATTTTCCCTTAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6239#0 GGGTGGCCGACGGACGTGCGCCACGTGGCGCACGTCACCTTCGACCGCTTCCATGGCTTC 60
consensus_6239#1 ------------------------------------------------------------
consensus_6239#0 CTCGGCCTCCCCGTCGAGTTCGAGGTCGAGATGCCATGCCGCGTCCCCAGCGCTAGTGCT 120
consensus_6239#1 ------------------------------------------------------------
consensus_6239#0 AGTGTTTTTGGTGTCTCGGCTGAATCGATGCAGTGCACCTACGATGGGAAGGGAAACTCA 180
consensus_6239#1 ------------------------------------------------------------
consensus_6239#0 GTCCCCACTATACTGCTGCACATGCAGGAGAGGTTGTATGCTCAGGGAGGCCTAAAGGCT 240
consensus_6239#1 ------------------------------------------------------------
consensus_6239#0 GAAGGAATCTTTCGCATAAACCCGGAAAATGACCAAGAGGAGCATGTGAGGGACCAGCTG 300
consensus_6239#1 ------------------------------------------------------------
consensus_6239#0 AACAAAGGAGTTGTCCCTGAGGACATTGATGTTCACTGTTTGGCAAGCCTGATTAAGGCA 360
consensus_6239#1 ------------------------------------------------------------
consensus_6239#0 TGGTTCAGGGAACTTCCAGAAGGTGTGCTTGATAGCCTCTCCCCTGAACAAGTGCTACAG 420
consensus_6239#1 ------------------------------------------------------------
consensus_6239#0 TGCAATTCTGAAGGAGAATTCCTAGAGCTCGTGACGCTATTGCGCCCGACTCAGGCAGCG 480
consensus_6239#1 ------------------------------------------------------------
consensus_6239#0 CTCCTCAATTGGGCTGTTGAACTGATGGCTGACGTTGTCGAAGAGGAGGAGCTGAACAAG 540
consensus_6239#1 ------------------------------------------------------------
consensus_6239#0 ATGAATGCTAGGAACATAGCCATGGTGTTTGCCCCCAACATGACTCAGATGTCAGATCCT 600
consensus_6239#1 ------------------------------------------------------------
consensus_6239#0 TTGACAGCCCTAATGCATGCTGTCCAAGTCATGAACTTCCTCAAGACATTGATCTTGAGG 660
consensus_6239#1 ------------------------------------------------------------
consensus_6239#0 ACACTTCGAGAGCGTGACGATGCAGCTAGCGGAGATTACACTCCATACTCATCTCCAGCT 720
consensus_6239#1 ------------------------------------------------------------
consensus_6239#0 TCATCCAGTCAGCAAAAC-GATGCT-GAGTACTATGGC-AGTGAGAGAGAC-ATGGACAG 776
consensus_6239#1 ----------AGCAAAACCGATCCTTGAGTACTGTGGCCGGTGAGAGAGCCCATGCCCAC 50
******** *** ** ******* **** ********* * *** **
consensus_6239#0 AAGCTGTGAAATGAGTGATATGCATAGCGAGATCAGCAGGTCTGGTCGACAGGTGGATTT 836
consensus_6239#1 AACCTGTGGGTTGAGTGATATGCATAGCGAGATCAGCAGGTCTGTTCCCCAGGTGGATTT 110
** ***** ********************************* ** ***********
consensus_6239#0 TCTGGTGAGGTACAACACCTGCTTCGACAGCGAGCAAGAAGGCGTCGATCCTCTGAGCGA 896
consensus_6239#1 TTTGGTGAGGTACAACGCATGCTTCGACAACGAGCAAGAAGGCGTCGATCCTTTGACGCA 170
* ************** * ********** ********************** *** *
consensus_6239#0 CGTCGAAGAAGGGTTCTTGAGACAGCTCGAACACGATCTCGAAGCGGATAAACGAGAGGA 956
consensus_6239#1 CGTCGAAGAAGGGTTCTTGAGACAGCTCGAACACGATCTCGAAGCGGATAAACGAGAGGA 230
************************************************************
consensus_6239#0 GAGCGCGAAAAAGCAGCACGAAATAAGTTCAGAGATCATGGCTGTGAAGGATGTTCAAGC 1016
consensus_6239#1 GAGCGCGAAAAAGCAGCCCGAAATAAGTTCAGAGATCATGGCTGTGAAGGATGTTCAAGC 290
***************** ******************************************
consensus_6239#0 TGAGCTGAAAGTTGAAGCCAAAGCAGCAGGGAACACACAGAAGGAAGAAGGTGCAGGGTC 1076
consensus_6239#1 TGAGCTGAAAGTTTAAGCCAAAGCAGCAGGGAACACACAGAAGGAAGAAGGTGCAGGGTC 350
************* **********************************************
consensus_6239#0 TTTGCAATGATGAAGTTCATGTGTTTTTTGAGCTTCTAGATCTCATGATTTACTGTGCTA 1136
consensus_6239#1 TTTGCAATGATGAAGTTCATGTGTTTTTTGAACTTCTAGATCTCATGATTTACTGTGCTA 410
******************************* ****************************
consensus_6239#0 GATTGTTTTCTCAACATATGGTTGAGTGTAGTGCCCAATGGTTGTTGACTGTAGTGCATC 1196
consensus_6239#1 GATTGTTTTCTCAACATATGGTTGAGTGTAGTGCCCAATGGTTGTTGACTGTAGTGCATC 470
************************************************************
consensus_6239#0 ATGTAAACTTAGCTGATCTTTTTATCCTTGGATGTGGGTGACAATTAGTGTGTATGTCAA 1256
consensus_6239#1 ATGTAAACTTAGCTGATCTTTTTATCCTGGGATGTGGGTGACAATTAGTGTGTATGTCAA 530
**************************** *******************************
consensus_6239#0 TGTTACTATGCCTAAGCGTAGTTTCGTGCGATCTGGGAATGTTGTTTGTTGCAAAACAGC 1316
consensus_6239#1 TGTTACTATGCCTAAGGGTAGTTTCATGCGATCTGGGAATGTTGTTTGTTGCATATCTGC 590
**************** ******** *************************** * * **
consensus_6239#0 ATCAAAAAAAAAAAAACACT-GTCATG--CTGNATCGNTGCGTAT--------------- 1358
consensus_6239#1 ATCAATGTCTTGAATCTCCAAGTGATGATTTAAATTGTTGTAAGTTGTAACAAACCAAAT 650
***** ** * ** *** * ** * ** *
consensus_6239#0 --------------------------
consensus_6239#1 TTTCCCTTAAAAAAAAAAAAAAAAAA 676
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||