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Oryza sativa
cluster # 6239 cluster # 6239       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6239#0 length = 1358 sequences # 3  
consensus_6239#1 length = 676 sequences # 1  

consensusID : consensus_6239#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1358
fasta sequence
                              [GGGTGGCCGACGGACGTGCGCCACGTGGCGCACGTCACCTTCGACCGCTTCCATGGCTTCCTCGGCCTCCCCGTCGAGTTCGAGGTCGAGATGCCATGCCGCGTCCCCAGCGCTAGTGCTAGTGTTTTTGGTGTCTCGGCTGAATCGATGCAGTGCACCTACGATGGGAAGGGAAACTCAGTCCCCACTATACTGCTGCACATGCAGGAGAGGTTGTATGCTCAGGGAGGCCTAAAGGCTGAAGGAATCTTTCGCATAAACCCGGAAAATGACCAAGAGGAGCATGTGAGGGACCAGCTGAACAAAGGAGTTGTCCCTGAGGACATTGATGTTCACTGTTTGGCAAGCCTGATTAAGGCATGGTTCAGGGAACTTCCAGAAGGTGTGCTTGATAGCCTCTCCCCTGAACAAGTGCTACAGTGCAATTCTGAAGGAGAATTCCTAGAGCTCGTGACGCTATTGCGCCCGACTCAGGCAGCGCTCCTCAATTGGGCTGTTGAACTGATGGCTGACGTTGTCGAAGAGGAGGAGCTGAACAAGATGAATGCTAGGAACATAGCCATGGTGTTTGCCCCCAACATGACTCAGATGTCAGATCCTTTGACAGCCCTAATGCATGCTGTCCAAGTCATGAACTTCCTCAAGACATTGATCTTGAGGACACTTCGAGAGCGTGACGATGCAGCTAGCGGAGATTACACTCCATACTCATCTCCAGCTTCATCCAGTCAGCAAAACGATGCTGAGTACTATGGCAGTGAGAGAGACATGGACAGAAGCTGTGAAATGAGTGATATGCATAGCGAGATCAGCAGGTCTGGTCGACAGGTGGATTTTCTGGTGAGGTACAACACCTGCTTCGACAGCGAGCAAGAAGGCGTCGATCCTCTGAGCGACGTCGAAGAAGGGTTCTTGAGACAGCTCGAACACGATCTCGAAGCGGATAAACGAGAGGAGAGCGCGAAAAAGCAGCACGAAATAAGTTCAGAGATCATGGCTGTGAAGGATGTTCAAGCTGAGCTGAAAGTTGAAGCCAAAGCAGCAGGGAACACACAGAAGGAAGAAGGTGCAGGGTCTTTGCAATGATGAAGTTCATGTGTTTTTTGAGCTTCTAGATCTCATGATTTACTGTGCTAGATTGTTTTCTCAACATATGGTTGAGTGTAGTGCCCAATGGTTGTTGACTGTAGTGCATCATGTAAACTTAGCTGATCTTTTTATCCTTGGATGTGGGTGACAATTAGTGTGTATGTCAATGTTACTATGCCTAAGCGTAGTTTCGTGCGATCTGGG-AATGTTGTTTGTTGCAAAACAGCATCAAAAAAAAAAAAACACTGTCATGCTGNATCGNTGCGTAT]

[+] EMBL AY364310             [GGGTGGCCGACGGACGTGCGCCACGTGGCGCACGTCACCTTCGACCGCTTCCATGGCTTCCTCGGCCTCCCCGTCGAGTTCGAGGTCGAGATGCCATGCCGCGTCCCCAGCGCTAGTGCTAGTGTTTTTGGTGTCTCGGCTGAATCGATGCAGTGCACCTACGATGGGAAGGGAAACTCAGTCCCCACTATACTGCTGCACATGCAGGAGAGGTTGTATGCTCAGGGAGGCCTAAAGGCTGAAGGAATCTTTCGCATAAACCCGGAAAATGACCAAGAGGAGCATGTGAGGGACCAGCTGAACAAAGGAGTTGTCCCTGAGGACATTGATGTTCACTGTTTGGCAAGCCTGATTAAGGCATGGTTCAGGGAACTTCCAGAAGGTGTGCTTGATAGCCTCTCCCCTGAACAAGTGCTACAGTGCAATTCTGAAGGAGAATTCCTAGAGCTCGTGACGCTATTGCGCCCGACTCAGGCAGCGCTCCTCAATTGGGCTGTTGAACTGATGGCTGACGTTGTCGAAGAGGAGGAGCTGAACAAGATGAATGCTAGGAACATAGCCATGGTGTTTGCCCCCAACATGACTCAGATGTCAGATCCTTTGACAGCCCTAATGCATGCTGTCCAAGTCATGAACTTCCTCAAGACATTGATCTTGAGGACACTTCGAGAGCGTGACGATGCAGCTAGCGGAGATTACACTCCATACTCATCTCCAGCTTCATCCAGTCAGCAAAACGATGCTGAGTACTATGGCAGTGAGAGAGACATGGACAGAAGCTGTGAAATGAGTGATATGCATAGCGAGATCAGCAGGTCTGGTCGACAGGTGGATTTTCTGGTGAGGTACAACACCTGCTTCGACAGCGAGCAAGAAGGCGTCGATCCTCTGAGCGACGTCGAAGAAGGGTTCTTGAGACAGCTCGAACACGATCTCGAAGCGGATAAACGAGAGGAGAGCGCGAAAAAGCAGCACGAAATAAGTTCAGAGATCATGGCTGTGAAGGATGTTCAAGCTGAGCTGAAAGTTGAAGCCAAAGCAGCAGGGAACACACAGAAGGAAGAAGGTGCAGGGTCTTTGCAATGATGAAGTTCATGTGTTTTTTGAGCTTCTAGATCTCATGATTTACTGTGCTAGATTGTTTTCTCAACATATGGTTGAGTGTAGTGCCCAATGGTTGTTGACTGTAGTGCATCATGTAAACTTAGCTGATCTTTTTATCCTTGGATGTGGGTGACAATTAGTGTGTATGTCAATGTTACTATGCCTAAGCGTAGTTTCGTGCGATCTGGG AATGTTGTTTGTTGCATATCTGCATCAAAAAAAAAAAA                           ]
[-] EMBL CF330947             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CAACATATGGTTGAGTGTAGTGCCCAATGGTTGTTGACTGTAGTGCATCATGTAAACTTAGCTGATCTTTTTATCCTTGGATGTGGGTGACAATTAGTGTGTATGTCAATGTTACTATGCCTAAGCGTAGTTTCGTGCGATCTGGGAAATGTTGTTTGTTGCAAAAaaa                                           ]
[+] EMBL CF330948             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           tAACATATGGTTGAGTGTAGTGCCCAATGGTTGTTGACTGTAGTGCATCATGTAAACTTAGCTGATCTTTTTATCCTTGGATGTGGGTGACAATTAGTGTGTATGTCAATGTTACTATGCCTAAGCGTAGTTTCGTGCGATCTGGG ATTGTTGTTTGTTGCAAAA A  A  AAAAAAAAAAAAACACTGTCATGCTGNATCGNTGCGTAT]


>consensus_6239#0 GGGTGGCCGACGGACGTGCGCCACGTGGCGCACGTCACCTTCGACCGCTTCCATGGCTTC CTCGGCCTCCCCGTCGAGTTCGAGGTCGAGATGCCATGCCGCGTCCCCAGCGCTAGTGCT AGTGTTTTTGGTGTCTCGGCTGAATCGATGCAGTGCACCTACGATGGGAAGGGAAACTCA GTCCCCACTATACTGCTGCACATGCAGGAGAGGTTGTATGCTCAGGGAGGCCTAAAGGCT GAAGGAATCTTTCGCATAAACCCGGAAAATGACCAAGAGGAGCATGTGAGGGACCAGCTG AACAAAGGAGTTGTCCCTGAGGACATTGATGTTCACTGTTTGGCAAGCCTGATTAAGGCA TGGTTCAGGGAACTTCCAGAAGGTGTGCTTGATAGCCTCTCCCCTGAACAAGTGCTACAG TGCAATTCTGAAGGAGAATTCCTAGAGCTCGTGACGCTATTGCGCCCGACTCAGGCAGCG CTCCTCAATTGGGCTGTTGAACTGATGGCTGACGTTGTCGAAGAGGAGGAGCTGAACAAG ATGAATGCTAGGAACATAGCCATGGTGTTTGCCCCCAACATGACTCAGATGTCAGATCCT TTGACAGCCCTAATGCATGCTGTCCAAGTCATGAACTTCCTCAAGACATTGATCTTGAGG ACACTTCGAGAGCGTGACGATGCAGCTAGCGGAGATTACACTCCATACTCATCTCCAGCT TCATCCAGTCAGCAAAACGATGCTGAGTACTATGGCAGTGAGAGAGACATGGACAGAAGC TGTGAAATGAGTGATATGCATAGCGAGATCAGCAGGTCTGGTCGACAGGTGGATTTTCTG GTGAGGTACAACACCTGCTTCGACAGCGAGCAAGAAGGCGTCGATCCTCTGAGCGACGTC GAAGAAGGGTTCTTGAGACAGCTCGAACACGATCTCGAAGCGGATAAACGAGAGGAGAGC GCGAAAAAGCAGCACGAAATAAGTTCAGAGATCATGGCTGTGAAGGATGTTCAAGCTGAG CTGAAAGTTGAAGCCAAAGCAGCAGGGAACACACAGAAGGAAGAAGGTGCAGGGTCTTTG CAATGATGAAGTTCATGTGTTTTTTGAGCTTCTAGATCTCATGATTTACTGTGCTAGATT GTTTTCTCAACATATGGTTGAGTGTAGTGCCCAATGGTTGTTGACTGTAGTGCATCATGT AAACTTAGCTGATCTTTTTATCCTTGGATGTGGGTGACAATTAGTGTGTATGTCAATGTT ACTATGCCTAAGCGTAGTTTCGTGCGATCTGGGAATGTTGTTTGTTGCAAAACAGCATCA AAAAAAAAAAAACACTGTCATGCTGNATCGNTGCGTAT



consensusID : consensus_6239#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 676
fasta sequence
                              [AGCAAAACCGATCCTTGAGTACTGTGGCCGGTGAGAGAGCCCATGCCCACAACCTGTGGGTTGAGTGATATGCATAGCGAGATCAGCAGGTCTGTTCCCCAGGTGGATTTTTTGGTGAGGTACAACGCATGCTTCGACAACGAGCAAGAAGGCGTCGATCCTTTGACGCACGTCGAAGAAGGGTTCTTGAGACAGCTCGAACACGATCTCGAAGCGGATAAACGAGAGGAGAGCGCGAAAAAGCAGCCCGAAATAAGTTCAGAGATCATGGCTGTGAAGGATGTTCAAGCTGAGCTGAAAGTTTAAGCCAAAGCAGCAGGGAACACACAGAAGGAAGAAGGTGCAGGGTCTTTGCAATGATGAAGTTCATGTGTTTTTTGAACTTCTAGATCTCATGATTTACTGTGCTAGATTGTTTTCTCAACATATGGTTGAGTGTAGTGCCCAATGGTTGTTGACTGTAGTGCATCATGTAAACTTAGCTGATCTTTTTATCCTGGGATGTGGGTGACAATTAGTGTGTATGTCAATGTTACTATGCCTAAGGGTAGTTTCATGCGATCTGGGAATGTTGTTTGTTGCATATCTGCATCAATGTCTTGAATCTCCAAGTGATGATTTAAATTGTTGTAAGTTGTAACAAACCAAATTTTCCCTTAAAAAAAAAAAAAAAAAA]

[-] EMBL CA760433             [AGCAAAACCGATCCTTGAGTACTGTGGCCGGTGAGAGAGCCCATGCCCACAACCTGTGGGTTGAGTGATATGCATAGCGAGATCAGCAGGTCTGTTCCCCAGGTGGATTTTTTGGTGAGGTACAACGCATGCTTCGACAACGAGCAAGAAGGCGTCGATCCTTTGACGCACGTCGAAGAAGGGTTCTTGAGACAGCTCGAACACGATCTCGAAGCGGATAAACGAGAGGAGAGCGCGAAAAAGCAGCCCGAAATAAGTTCAGAGATCATGGCTGTGAAGGATGTTCAAGCTGAGCTGAAAGTTTAAGCCAAAGCAGCAGGGAACACACAGAAGGAAGAAGGTGCAGGGTCTTTGCAATGATGAAGTTCATGTGTTTTTTGAACTTCTAGATCTCATGATTTACTGTGCTAGATTGTTTTCTCAACATATGGTTGAGTGTAGTGCCCAATGGTTGTTGACTGTAGTGCATCATGTAAACTTAGCTGATCTTTTTATCCTGGGATGTGGGTGACAATTAGTGTGTATGTCAATGTTACTATGCCTAAGGGTAGTTTCATGCGATCTGGGAATGTTGTTTGTTGCATATCTGCATCAATGTCTTGAATCTCCAAGTGATGATTTAAATTGTTGTAAGTTGTAACAAACCAAATTTTCCCTTAAAAAAAAAAAAAAAAAA]


>consensus_6239#1 AGCAAAACCGATCCTTGAGTACTGTGGCCGGTGAGAGAGCCCATGCCCACAACCTGTGGG TTGAGTGATATGCATAGCGAGATCAGCAGGTCTGTTCCCCAGGTGGATTTTTTGGTGAGG TACAACGCATGCTTCGACAACGAGCAAGAAGGCGTCGATCCTTTGACGCACGTCGAAGAA GGGTTCTTGAGACAGCTCGAACACGATCTCGAAGCGGATAAACGAGAGGAGAGCGCGAAA AAGCAGCCCGAAATAAGTTCAGAGATCATGGCTGTGAAGGATGTTCAAGCTGAGCTGAAA GTTTAAGCCAAAGCAGCAGGGAACACACAGAAGGAAGAAGGTGCAGGGTCTTTGCAATGA TGAAGTTCATGTGTTTTTTGAACTTCTAGATCTCATGATTTACTGTGCTAGATTGTTTTC TCAACATATGGTTGAGTGTAGTGCCCAATGGTTGTTGACTGTAGTGCATCATGTAAACTT AGCTGATCTTTTTATCCTGGGATGTGGGTGACAATTAGTGTGTATGTCAATGTTACTATG CCTAAGGGTAGTTTCATGCGATCTGGGAATGTTGTTTGTTGCATATCTGCATCAATGTCT TGAATCTCCAAGTGATGATTTAAATTGTTGTAAGTTGTAACAAACCAAATTTTCCCTTAA AAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6239#0      GGGTGGCCGACGGACGTGCGCCACGTGGCGCACGTCACCTTCGACCGCTTCCATGGCTTC 60
consensus_6239#1      ------------------------------------------------------------
                                                                                  

consensus_6239#0      CTCGGCCTCCCCGTCGAGTTCGAGGTCGAGATGCCATGCCGCGTCCCCAGCGCTAGTGCT 120
consensus_6239#1      ------------------------------------------------------------
                                                                                  

consensus_6239#0      AGTGTTTTTGGTGTCTCGGCTGAATCGATGCAGTGCACCTACGATGGGAAGGGAAACTCA 180
consensus_6239#1      ------------------------------------------------------------
                                                                                  

consensus_6239#0      GTCCCCACTATACTGCTGCACATGCAGGAGAGGTTGTATGCTCAGGGAGGCCTAAAGGCT 240
consensus_6239#1      ------------------------------------------------------------
                                                                                  

consensus_6239#0      GAAGGAATCTTTCGCATAAACCCGGAAAATGACCAAGAGGAGCATGTGAGGGACCAGCTG 300
consensus_6239#1      ------------------------------------------------------------
                                                                                  

consensus_6239#0      AACAAAGGAGTTGTCCCTGAGGACATTGATGTTCACTGTTTGGCAAGCCTGATTAAGGCA 360
consensus_6239#1      ------------------------------------------------------------
                                                                                  

consensus_6239#0      TGGTTCAGGGAACTTCCAGAAGGTGTGCTTGATAGCCTCTCCCCTGAACAAGTGCTACAG 420
consensus_6239#1      ------------------------------------------------------------
                                                                                  

consensus_6239#0      TGCAATTCTGAAGGAGAATTCCTAGAGCTCGTGACGCTATTGCGCCCGACTCAGGCAGCG 480
consensus_6239#1      ------------------------------------------------------------
                                                                                  

consensus_6239#0      CTCCTCAATTGGGCTGTTGAACTGATGGCTGACGTTGTCGAAGAGGAGGAGCTGAACAAG 540
consensus_6239#1      ------------------------------------------------------------
                                                                                  

consensus_6239#0      ATGAATGCTAGGAACATAGCCATGGTGTTTGCCCCCAACATGACTCAGATGTCAGATCCT 600
consensus_6239#1      ------------------------------------------------------------
                                                                                  

consensus_6239#0      TTGACAGCCCTAATGCATGCTGTCCAAGTCATGAACTTCCTCAAGACATTGATCTTGAGG 660
consensus_6239#1      ------------------------------------------------------------
                                                                                  

consensus_6239#0      ACACTTCGAGAGCGTGACGATGCAGCTAGCGGAGATTACACTCCATACTCATCTCCAGCT 720
consensus_6239#1      ------------------------------------------------------------
                                                                                  

consensus_6239#0      TCATCCAGTCAGCAAAAC-GATGCT-GAGTACTATGGC-AGTGAGAGAGAC-ATGGACAG 776
consensus_6239#1      ----------AGCAAAACCGATCCTTGAGTACTGTGGCCGGTGAGAGAGCCCATGCCCAC 50
                                ******** *** ** ******* ****  ********* * ***  ** 

consensus_6239#0      AAGCTGTGAAATGAGTGATATGCATAGCGAGATCAGCAGGTCTGGTCGACAGGTGGATTT 836
consensus_6239#1      AACCTGTGGGTTGAGTGATATGCATAGCGAGATCAGCAGGTCTGTTCCCCAGGTGGATTT 110
                      ** *****   ********************************* **  ***********

consensus_6239#0      TCTGGTGAGGTACAACACCTGCTTCGACAGCGAGCAAGAAGGCGTCGATCCTCTGAGCGA 896
consensus_6239#1      TTTGGTGAGGTACAACGCATGCTTCGACAACGAGCAAGAAGGCGTCGATCCTTTGACGCA 170
                      * ************** * ********** ********************** ***   *

consensus_6239#0      CGTCGAAGAAGGGTTCTTGAGACAGCTCGAACACGATCTCGAAGCGGATAAACGAGAGGA 956
consensus_6239#1      CGTCGAAGAAGGGTTCTTGAGACAGCTCGAACACGATCTCGAAGCGGATAAACGAGAGGA 230
                      ************************************************************

consensus_6239#0      GAGCGCGAAAAAGCAGCACGAAATAAGTTCAGAGATCATGGCTGTGAAGGATGTTCAAGC 1016
consensus_6239#1      GAGCGCGAAAAAGCAGCCCGAAATAAGTTCAGAGATCATGGCTGTGAAGGATGTTCAAGC 290
                      ***************** ******************************************

consensus_6239#0      TGAGCTGAAAGTTGAAGCCAAAGCAGCAGGGAACACACAGAAGGAAGAAGGTGCAGGGTC 1076
consensus_6239#1      TGAGCTGAAAGTTTAAGCCAAAGCAGCAGGGAACACACAGAAGGAAGAAGGTGCAGGGTC 350
                      ************* **********************************************

consensus_6239#0      TTTGCAATGATGAAGTTCATGTGTTTTTTGAGCTTCTAGATCTCATGATTTACTGTGCTA 1136
consensus_6239#1      TTTGCAATGATGAAGTTCATGTGTTTTTTGAACTTCTAGATCTCATGATTTACTGTGCTA 410
                      ******************************* ****************************

consensus_6239#0      GATTGTTTTCTCAACATATGGTTGAGTGTAGTGCCCAATGGTTGTTGACTGTAGTGCATC 1196
consensus_6239#1      GATTGTTTTCTCAACATATGGTTGAGTGTAGTGCCCAATGGTTGTTGACTGTAGTGCATC 470
                      ************************************************************

consensus_6239#0      ATGTAAACTTAGCTGATCTTTTTATCCTTGGATGTGGGTGACAATTAGTGTGTATGTCAA 1256
consensus_6239#1      ATGTAAACTTAGCTGATCTTTTTATCCTGGGATGTGGGTGACAATTAGTGTGTATGTCAA 530
                      **************************** *******************************

consensus_6239#0      TGTTACTATGCCTAAGCGTAGTTTCGTGCGATCTGGGAATGTTGTTTGTTGCAAAACAGC 1316
consensus_6239#1      TGTTACTATGCCTAAGGGTAGTTTCATGCGATCTGGGAATGTTGTTTGTTGCATATCTGC 590
                      **************** ******** *************************** * * **

consensus_6239#0      ATCAAAAAAAAAAAAACACT-GTCATG--CTGNATCGNTGCGTAT--------------- 1358
consensus_6239#1      ATCAATGTCTTGAATCTCCAAGTGATGATTTAAATTGTTGTAAGTTGTAACAAACCAAAT 650
                      *****       **    *  ** ***   *  ** * **    *               

consensus_6239#0      --------------------------
consensus_6239#1      TTTCCCTTAAAAAAAAAAAAAAAAAA 676
                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)