These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6239#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1358 fasta sequence [GGGTGGCCGACGGACGTGCGCCACGTGGCGCACGTCACCTTCGACCGCTTCCATGGCTTCCTCGGCCTCCCCGTCGAGTTCGAGGTCGAGATGCCATGCCGCGTCCCCAGCGCTAGTGCTAGTGTTTTTGGTGTCTCGGCTGAATCGATGCAGTGCACCTACGATGGGAAGGGAAACTCAGTCCCCACTATACTGCTGCACATGCAGGAGAGGTTGTATGCTCAGGGAGGCCTAAAGGCTGAAGGAATCTTTCGCATAAACCCGGAAAATGACCAAGAGGAGCATGTGAGGGACCAGCTGAACAAAGGAGTTGTCCCTGAGGACATTGATGTTCACTGTTTGGCAAGCCTGATTAAGGCATGGTTCAGGGAACTTCCAGAAGGTGTGCTTGATAGCCTCTCCCCTGAACAAGTGCTACAGTGCAATTCTGAAGGAGAATTCCTAGAGCTCGTGACGCTATTGCGCCCGACTCAGGCAGCGCTCCTCAATTGGGCTGTTGAACTGATGGCTGACGTTGTCGAAGAGGAGGAGCTGAACAAGATGAATGCTAGGAACATAGCCATGGTGTTTGCCCCCAACATGACTCAGATGTCAGATCCTTTGACAGCCCTAATGCATGCTGTCCAAGTCATGAACTTCCTCAAGACATTGATCTTGAGGACACTTCGAGAGCGTGACGATGCAGCTAGCGGAGATTACACTCCATACTCATCTCCAGCTTCATCCAGTCAGCAAAACGATGCTGAGTACTATGGCAGTGAGAGAGACATGGACAGAAGCTGTGAAATGAGTGATATGCATAGCGAGATCAGCAGGTCTGGTCGACAGGTGGATTTTCTGGTGAGGTACAACACCTGCTTCGACAGCGAGCAAGAAGGCGTCGATCCTCTGAGCGACGTCGAAGAAGGGTTCTTGAGACAGCTCGAACACGATCTCGAAGCGGATAAACGAGAGGAGAGCGCGAAAAAGCAGCACGAAATAAGTTCAGAGATCATGGCTGTGAAGGATGTTCAAGCTGAGCTGAAAGTTGAAGCCAAAGCAGCAGGGAACACACAGAAGGAAGAAGGTGCAGGGTCTTTGCAATGATGAAGTTCATGTGTTTTTTGAGCTTCTAGATCTCATGATTTACTGTGCTAGATTGTTTTCTCAACATATGGTTGAGTGTAGTGCCCAATGGTTGTTGACTGTAGTGCATCATGTAAACTTAGCTGATCTTTTTATCCTTGGATGTGGGTGACAATTAGTGTGTATGTCAATGTTACTATGCCTAAGCGTAGTTTCGTGCGATCTGGG-AATGTTGTTTGTTGCAAAACAGCATCAAAAAAAAAAAAACACTGTCATGCTGNATCGNTGCGTAT] [+] EMBL AY364310 [GGGTGGCCGACGGACGTGCGCCACGTGGCGCACGTCACCTTCGACCGCTTCCATGGCTTCCTCGGCCTCCCCGTCGAGTTCGAGGTCGAGATGCCATGCCGCGTCCCCAGCGCTAGTGCTAGTGTTTTTGGTGTCTCGGCTGAATCGATGCAGTGCACCTACGATGGGAAGGGAAACTCAGTCCCCACTATACTGCTGCACATGCAGGAGAGGTTGTATGCTCAGGGAGGCCTAAAGGCTGAAGGAATCTTTCGCATAAACCCGGAAAATGACCAAGAGGAGCATGTGAGGGACCAGCTGAACAAAGGAGTTGTCCCTGAGGACATTGATGTTCACTGTTTGGCAAGCCTGATTAAGGCATGGTTCAGGGAACTTCCAGAAGGTGTGCTTGATAGCCTCTCCCCTGAACAAGTGCTACAGTGCAATTCTGAAGGAGAATTCCTAGAGCTCGTGACGCTATTGCGCCCGACTCAGGCAGCGCTCCTCAATTGGGCTGTTGAACTGATGGCTGACGTTGTCGAAGAGGAGGAGCTGAACAAGATGAATGCTAGGAACATAGCCATGGTGTTTGCCCCCAACATGACTCAGATGTCAGATCCTTTGACAGCCCTAATGCATGCTGTCCAAGTCATGAACTTCCTCAAGACATTGATCTTGAGGACACTTCGAGAGCGTGACGATGCAGCTAGCGGAGATTACACTCCATACTCATCTCCAGCTTCATCCAGTCAGCAAAACGATGCTGAGTACTATGGCAGTGAGAGAGACATGGACAGAAGCTGTGAAATGAGTGATATGCATAGCGAGATCAGCAGGTCTGGTCGACAGGTGGATTTTCTGGTGAGGTACAACACCTGCTTCGACAGCGAGCAAGAAGGCGTCGATCCTCTGAGCGACGTCGAAGAAGGGTTCTTGAGACAGCTCGAACACGATCTCGAAGCGGATAAACGAGAGGAGAGCGCGAAAAAGCAGCACGAAATAAGTTCAGAGATCATGGCTGTGAAGGATGTTCAAGCTGAGCTGAAAGTTGAAGCCAAAGCAGCAGGGAACACACAGAAGGAAGAAGGTGCAGGGTCTTTGCAATGATGAAGTTCATGTGTTTTTTGAGCTTCTAGATCTCATGATTTACTGTGCTAGATTGTTTTCTCAACATATGGTTGAGTGTAGTGCCCAATGGTTGTTGACTGTAGTGCATCATGTAAACTTAGCTGATCTTTTTATCCTTGGATGTGGGTGACAATTAGTGTGTATGTCAATGTTACTATGCCTAAGCGTAGTTTCGTGCGATCTGGG AATGTTGTTTGTTGCATATCTGCATCAAAAAAAAAAAA ] [-] EMBL CF330947 [ CAACATATGGTTGAGTGTAGTGCCCAATGGTTGTTGACTGTAGTGCATCATGTAAACTTAGCTGATCTTTTTATCCTTGGATGTGGGTGACAATTAGTGTGTATGTCAATGTTACTATGCCTAAGCGTAGTTTCGTGCGATCTGGGAAATGTTGTTTGTTGCAAAAaaa ] [+] EMBL CF330948 [ tAACATATGGTTGAGTGTAGTGCCCAATGGTTGTTGACTGTAGTGCATCATGTAAACTTAGCTGATCTTTTTATCCTTGGATGTGGGTGACAATTAGTGTGTATGTCAATGTTACTATGCCTAAGCGTAGTTTCGTGCGATCTGGG ATTGTTGTTTGTTGCAAAA A A AAAAAAAAAAAAACACTGTCATGCTGNATCGNTGCGTAT] consensusID : consensus_6239#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence [AGCAAAACCGATCCTTGAGTACTGTGGCCGGTGAGAGAGCCCATGCCCACAACCTGTGGGTTGAGTGATATGCATAGCGAGATCAGCAGGTCTGTTCCCCAGGTGGATTTTTTGGTGAGGTACAACGCATGCTTCGACAACGAGCAAGAAGGCGTCGATCCTTTGACGCACGTCGAAGAAGGGTTCTTGAGACAGCTCGAACACGATCTCGAAGCGGATAAACGAGAGGAGAGCGCGAAAAAGCAGCCCGAAATAAGTTCAGAGATCATGGCTGTGAAGGATGTTCAAGCTGAGCTGAAAGTTTAAGCCAAAGCAGCAGGGAACACACAGAAGGAAGAAGGTGCAGGGTCTTTGCAATGATGAAGTTCATGTGTTTTTTGAACTTCTAGATCTCATGATTTACTGTGCTAGATTGTTTTCTCAACATATGGTTGAGTGTAGTGCCCAATGGTTGTTGACTGTAGTGCATCATGTAAACTTAGCTGATCTTTTTATCCTGGGATGTGGGTGACAATTAGTGTGTATGTCAATGTTACTATGCCTAAGGGTAGTTTCATGCGATCTGGGAATGTTGTTTGTTGCATATCTGCATCAATGTCTTGAATCTCCAAGTGATGATTTAAATTGTTGTAAGTTGTAACAAACCAAATTTTCCCTTAAAAAAAAAAAAAAAAAA] [-] EMBL CA760433 [AGCAAAACCGATCCTTGAGTACTGTGGCCGGTGAGAGAGCCCATGCCCACAACCTGTGGGTTGAGTGATATGCATAGCGAGATCAGCAGGTCTGTTCCCCAGGTGGATTTTTTGGTGAGGTACAACGCATGCTTCGACAACGAGCAAGAAGGCGTCGATCCTTTGACGCACGTCGAAGAAGGGTTCTTGAGACAGCTCGAACACGATCTCGAAGCGGATAAACGAGAGGAGAGCGCGAAAAAGCAGCCCGAAATAAGTTCAGAGATCATGGCTGTGAAGGATGTTCAAGCTGAGCTGAAAGTTTAAGCCAAAGCAGCAGGGAACACACAGAAGGAAGAAGGTGCAGGGTCTTTGCAATGATGAAGTTCATGTGTTTTTTGAACTTCTAGATCTCATGATTTACTGTGCTAGATTGTTTTCTCAACATATGGTTGAGTGTAGTGCCCAATGGTTGTTGACTGTAGTGCATCATGTAAACTTAGCTGATCTTTTTATCCTGGGATGTGGGTGACAATTAGTGTGTATGTCAATGTTACTATGCCTAAGGGTAGTTTCATGCGATCTGGGAATGTTGTTTGTTGCATATCTGCATCAATGTCTTGAATCTCCAAGTGATGATTTAAATTGTTGTAAGTTGTAACAAACCAAATTTTCCCTTAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6239#0 GGGTGGCCGACGGACGTGCGCCACGTGGCGCACGTCACCTTCGACCGCTTCCATGGCTTC 60 consensus_6239#1 ------------------------------------------------------------ consensus_6239#0 CTCGGCCTCCCCGTCGAGTTCGAGGTCGAGATGCCATGCCGCGTCCCCAGCGCTAGTGCT 120 consensus_6239#1 ------------------------------------------------------------ consensus_6239#0 AGTGTTTTTGGTGTCTCGGCTGAATCGATGCAGTGCACCTACGATGGGAAGGGAAACTCA 180 consensus_6239#1 ------------------------------------------------------------ consensus_6239#0 GTCCCCACTATACTGCTGCACATGCAGGAGAGGTTGTATGCTCAGGGAGGCCTAAAGGCT 240 consensus_6239#1 ------------------------------------------------------------ consensus_6239#0 GAAGGAATCTTTCGCATAAACCCGGAAAATGACCAAGAGGAGCATGTGAGGGACCAGCTG 300 consensus_6239#1 ------------------------------------------------------------ consensus_6239#0 AACAAAGGAGTTGTCCCTGAGGACATTGATGTTCACTGTTTGGCAAGCCTGATTAAGGCA 360 consensus_6239#1 ------------------------------------------------------------ consensus_6239#0 TGGTTCAGGGAACTTCCAGAAGGTGTGCTTGATAGCCTCTCCCCTGAACAAGTGCTACAG 420 consensus_6239#1 ------------------------------------------------------------ consensus_6239#0 TGCAATTCTGAAGGAGAATTCCTAGAGCTCGTGACGCTATTGCGCCCGACTCAGGCAGCG 480 consensus_6239#1 ------------------------------------------------------------ consensus_6239#0 CTCCTCAATTGGGCTGTTGAACTGATGGCTGACGTTGTCGAAGAGGAGGAGCTGAACAAG 540 consensus_6239#1 ------------------------------------------------------------ consensus_6239#0 ATGAATGCTAGGAACATAGCCATGGTGTTTGCCCCCAACATGACTCAGATGTCAGATCCT 600 consensus_6239#1 ------------------------------------------------------------ consensus_6239#0 TTGACAGCCCTAATGCATGCTGTCCAAGTCATGAACTTCCTCAAGACATTGATCTTGAGG 660 consensus_6239#1 ------------------------------------------------------------ consensus_6239#0 ACACTTCGAGAGCGTGACGATGCAGCTAGCGGAGATTACACTCCATACTCATCTCCAGCT 720 consensus_6239#1 ------------------------------------------------------------ consensus_6239#0 TCATCCAGTCAGCAAAAC-GATGCT-GAGTACTATGGC-AGTGAGAGAGAC-ATGGACAG 776 consensus_6239#1 ----------AGCAAAACCGATCCTTGAGTACTGTGGCCGGTGAGAGAGCCCATGCCCAC 50 ******** *** ** ******* **** ********* * *** ** consensus_6239#0 AAGCTGTGAAATGAGTGATATGCATAGCGAGATCAGCAGGTCTGGTCGACAGGTGGATTT 836 consensus_6239#1 AACCTGTGGGTTGAGTGATATGCATAGCGAGATCAGCAGGTCTGTTCCCCAGGTGGATTT 110 ** ***** ********************************* ** *********** consensus_6239#0 TCTGGTGAGGTACAACACCTGCTTCGACAGCGAGCAAGAAGGCGTCGATCCTCTGAGCGA 896 consensus_6239#1 TTTGGTGAGGTACAACGCATGCTTCGACAACGAGCAAGAAGGCGTCGATCCTTTGACGCA 170 * ************** * ********** ********************** *** * consensus_6239#0 CGTCGAAGAAGGGTTCTTGAGACAGCTCGAACACGATCTCGAAGCGGATAAACGAGAGGA 956 consensus_6239#1 CGTCGAAGAAGGGTTCTTGAGACAGCTCGAACACGATCTCGAAGCGGATAAACGAGAGGA 230 ************************************************************ consensus_6239#0 GAGCGCGAAAAAGCAGCACGAAATAAGTTCAGAGATCATGGCTGTGAAGGATGTTCAAGC 1016 consensus_6239#1 GAGCGCGAAAAAGCAGCCCGAAATAAGTTCAGAGATCATGGCTGTGAAGGATGTTCAAGC 290 ***************** ****************************************** consensus_6239#0 TGAGCTGAAAGTTGAAGCCAAAGCAGCAGGGAACACACAGAAGGAAGAAGGTGCAGGGTC 1076 consensus_6239#1 TGAGCTGAAAGTTTAAGCCAAAGCAGCAGGGAACACACAGAAGGAAGAAGGTGCAGGGTC 350 ************* ********************************************** consensus_6239#0 TTTGCAATGATGAAGTTCATGTGTTTTTTGAGCTTCTAGATCTCATGATTTACTGTGCTA 1136 consensus_6239#1 TTTGCAATGATGAAGTTCATGTGTTTTTTGAACTTCTAGATCTCATGATTTACTGTGCTA 410 ******************************* **************************** consensus_6239#0 GATTGTTTTCTCAACATATGGTTGAGTGTAGTGCCCAATGGTTGTTGACTGTAGTGCATC 1196 consensus_6239#1 GATTGTTTTCTCAACATATGGTTGAGTGTAGTGCCCAATGGTTGTTGACTGTAGTGCATC 470 ************************************************************ consensus_6239#0 ATGTAAACTTAGCTGATCTTTTTATCCTTGGATGTGGGTGACAATTAGTGTGTATGTCAA 1256 consensus_6239#1 ATGTAAACTTAGCTGATCTTTTTATCCTGGGATGTGGGTGACAATTAGTGTGTATGTCAA 530 **************************** ******************************* consensus_6239#0 TGTTACTATGCCTAAGCGTAGTTTCGTGCGATCTGGGAATGTTGTTTGTTGCAAAACAGC 1316 consensus_6239#1 TGTTACTATGCCTAAGGGTAGTTTCATGCGATCTGGGAATGTTGTTTGTTGCATATCTGC 590 **************** ******** *************************** * * ** consensus_6239#0 ATCAAAAAAAAAAAAACACT-GTCATG--CTGNATCGNTGCGTAT--------------- 1358 consensus_6239#1 ATCAATGTCTTGAATCTCCAAGTGATGATTTAAATTGTTGTAAGTTGTAACAAACCAAAT 650 ***** ** * ** *** * ** * ** * consensus_6239#0 -------------------------- consensus_6239#1 TTTCCCTTAAAAAAAAAAAAAAAAAA 676 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||