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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6243#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1010 fasta sequence
[CTGGGGCAATTCCAGCTCTTGTGCTTCTGTTGAGTAATGGAAGTCAACGGGGTAAAAGGGATGCAGCTACAGCCCTATTTAACCTGTGTATCTATCAGGGCAACAAGGGCAAAGCTGTTAGAGCTGGATTGATCCCTGTACTATTGGGACTAGTCACTGAGACTGAAAGTGGTATGATGGATGAGGCCCTTGCTATATTGGCAATTCTCTCGAGCCATCCTGAGGGCAAGACTGCAATTAGTTCAGCCAACGCCATTCCAATGCTAGTTGGAGTAATCAGAAATGGATCAGCAAGGAACAAGGAAAATGCTGCTGCTGTTCTGGTGCATCTCTGCAATGGTGAACAGCAGCAACAGCATCTTGCTGAAGCGCAGGAGCAGGGAATTGTGACCCTGTTGGAGGAACTAGCCAAAAGTGGCACAGACAGAGGAAAGAGGAAAGCAATCCAGCTTCTTGAGCGAATGAATCGGTTTCTTATGCAGCAAAGTCAAGCCCAAGCCCAAGCAGAGGCCATGGCACAAGCTCATGCGCATGCACAGTCTCAAGCTCAGGTTCAGGCTCTTAACGAAGCTCAATCTCAGGTAGAGATGCAGGTGGAGCAATTGTTGCTTCCAACTACTTCACATCTTTCTGATAGACGAGACGGTTGATAAGCAGGATGTTATTCATAGTTAGTGGGTTTCTTTTTTATTCATAGTCAGCGGCTTGTTTTTTTGGCTGAGGCTAGCAGTTGGAAGATCGCCTGCAATGCCTAGCGTGGAGGTGTGTGGTTTTTGTTAAGCAATTAGAATCAGGAAGTGCCATTAGCGTGATTCTAGGGCCATGAGCTTCTTGACAATTGAGTTTTGAGGTCGTGGAACTGTTAACCTGTGTGCCGTTTGTACAATGCACCCAGTGATGAATGTTGGGACCCTCGAGTTTTAGGGAGGTGCCATTCTACTTGTACCCGGTGCCTATTACAGGACTGGTCTGTGGCTTCCAAGGTTGATAATTTTACTTGCCTGACTCAC]
[+] EMBL AK060190 [CTGGGGCAATTCCAGCTCTTGTGCTTCTGTTGAGTAATGGAAGTCAACGGGGTAAAAGGGATGCAGCTACAGCCCTATTTAACCTGTGTATCTATCAGGGCAACAAGGGCAAAGCTGTTAGAGCTGGATTGATCCCTGTACTATTGGGACTAGTCACTGAGACTGAAAGTGGTATGATGGATGAGGCCCTTGCTATATTGGCAATTCTCTCGAGCCATCCTGAGGGCAAGACTGCAATTAGTTCAGCCAACGCCATTCCAATGCTAGTTGGAGTAATCAGAAATGGATCAGCAAGGAACAAGGAAAATGCTGCTGCTGTTCTGGTGCATCTCTGCAATGGTGAACAGCAGCAACAGCATCTTGCTGAAGCGCAGGAGCAGGGAATTGTGACCCTGTTGGAGGAACTAGCCAAAAGTGGCACAGACAGAGGAAAGAGGAAAGCAATCCAGCTTCTTGAGCGAATGAATCGGTTTCTTATGCAGCAAAGTCAAGCCCAAGCCCAAGCAGAGGCCATGGCACAAGCTCATGCGCATGCACAGTCTCAAGCTCAGGTTCAGGCTCTTAACGAAGCTCAATCTCAGGTAGAGATGCAGGTGGAGCAATTGTTGCTTCCAACTACTTCACATCTTTCTGATAGACGAGACGGTTGATAAGCAGGATGTTATTCATAGTTAGTGGGTTTCTTTTTTATTCATAGTCAGCGGCTTGTTTTTTTGGCTGAGGCTAGCAGTTGGAAGATCGCCTGCAATGCCTAGCGTGGAGGTGTGTGGTTTTTGTTAAGCAATTAGAATCAGGAAGTGCCATTAGCGTGATTCTAGGGCCATGAGCTTCTTGACAATTGAGTTTTGAGGTCGTGGAACTGTTAACCTGTGTGCCGTTTGTACAATGCACCCAGTGATGAATGTTGGGACCCTCGAGTTTTAGGGAGGTGCCATTCTACTTGTACCCGGTGCCTATTACAGGACTGGTCTGTGGCTTCCAAGGTTGATAATTTTACTTGCCTGACTCAC]
[-] EMBL CB636819 [ AAATACTTCACATCTTTTTGATAGAGGAGACGGTTGATAAGCAGGATGTAATTCATAGTTAGTGGGTTTCTTTTTTATTCATAGTCAGCGGTTTGTTTTTTTGGCTGAGGCTAGCAGTTGGAAGATCGCCTGCAATGCCTAGCGTGGAGGTGTGTGGTTTTTGTTAAGCAATTAGAATCAGGAAGTGCCATTAGCGTGATTTTAGGGCCATGAGCTTCTTGACAATTGAGTTTTGAGGTCGTGGGACTGTTAACCTGTGTGCCGTTTGTACAATGCACCCAGTGATGAATGTTGGGACCCT GAGTTTTAag ]
consensusID : consensus_6243#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence
[GCGAAATTGGTGCCGGGCCCCCCCCTCAAGGTGCACGGTTCNGATAAGCTTCTTAAGTGAGCCCAAGGGCCAGCCAACAGCAAAGAGGAAAGCCATTCAGCTTTTTGAGGGAAAGGATCGGTTTTTTATCACACAAGTCAAGCCCAACCCCAACCAAAGGCCATGGCCCAAGGTCATGCGCATGCACAGTCTCAAGCTCAGGTTCAGGCTTTTAACGAAGCTCAATCTCAGGTAGAGATGCAGGTGGAGCAATTGTTGCTTCCAACTACTTCCCATCTTTTTGATACACGAAGCGGTTGATAAGCAGGATGTTATTCATAGTTAGTGGGTTTCTTTCTTATTCATAGTCAGCGGCCTGTTTTTTTGGCTGAGGCTACCAGTTGGAAGATTGCCTGCAATGCCTAGCGTGGAGGTGTGTGGTTTTTGTTAAGCAATTAGAATCAGGAAGTGCCCTTAGCGTGATTCTAGGGCCATGAGCGTGGTGACAATTGAGTTTTGAGGTTGTGGAACTGTTAACCTGTGTGCCGTTTGTACAATGCACCCAGTGATGAATGTTGGGACCCTCGAGTTTTAGGGAGGTGCCATTTTACTTGTACCCGGTGCCTATTACAGGACTGGTTTGTGGCTTCCAAGGTTGATAATTTTACTTGCCTGACTCACAGTTTCAGTGAAAAAAAAAAAAAAAAA]
[-] EMBL CA761532 [GCGAAATTGGTGCCGGGCCCCCCCCTCAAGGTGCACGGTTCNGATAAGCTTCTTAAGTGAGCCCAAGGGCCAGCCAACAGCAAAGAGGAAAGCCATTCAGCTTTTTGAGGGAAAGGATCGGTTTTTTATCACACAAGTCAAGCCCAACCCCAACCAAAGGCCATGGCCCAAGGTCATGCGCATGCACAGTCTCAAGCTCAGGTTCAGGCTTTTAACGAAGCTCAATCTCAGGTAGAGATGCAGGTGGAGCAATTGTTGCTTCCAACTACTTCCCATCTTTTTGATACACGAAGCGGTTGATAAGCAGGATGTTATTCATAGTTAGTGGGTTTCTTTCTTATTCATAGTCAGCGGCCTGTTTTTTTGGCTGAGGCTACCAGTTGGAAGATTGCCTGCAATGCCTAGCGTGGAGGTGTGTGGTTTTTGTTAAGCAATTAGAATCAGGAAGTGCCCTTAGCGTGATTCTAGGGCCATGAGCGTGGTGACAATTGAGTTTTGAGGTTGTGGAACTGTTAACCTGTGTGCCGTTTGTACAATGCACCCAGTGATGAATGTTGGGACCCTCGAGTTTTAGGGAGGTGCCATTTTACTTGTACCCGGTGCCTATTACAGGACTGGTTTGTGGCTTCCAAGGTTGATAATTTTACTTGCCTGACTCACAGTTTCAGTGAAAAAAAAAAAAAAAAA]
consensusID : consensus_6243#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence
[CTGGGGCAATTCCAGCTCTTGTGCTTCTGTTGAGTAATGGAAGTCAACGGGGTAAAAGGGATGCAGCTACAGCCCTATTTAACCTGTGTATCTATCAGGGCAACAAGGGCAAAGCTGTTAGAGCTGGATTGATCCCTGTACTATTAGGACTAGTCACTGAGACTGAAAGTGGTATGATGGATGAGGCCCTTGCTATATTGGCAATTCTCTCGAGCCATNCTGAGGGCAAGACTGCAATTAGTTCAGCCAACGCCATTTCCATGCTAGGTGGAGTAATCAGAAATGGATCACCAGGGAACAAGGAAAATGCTTGTGCTGTCCTGTGCATCTCTGCAATGTTGAACCAGAACAACAGCATCTTTGCTTGAGCGCAGGAACCAGGGAATTGTGACCCTTGGTGGAGGAACTTAGCCAAAGTGGCACAGACAGAGGAAAGAGGAAAGCATTCACCTTTCTGTGGCGAATGGAACGGGTTTTTATGCCGAAGTTAAGCCCAAACCCAGCAGGGGCCTGGGCCAAGTTATGGCCTGGCCACGCTTAAGTT]
[+] EMBL BE040196 [CTGGGGCAATTCCAGCTCTTGTGCTTCTGTTGAGTAATGGAAGTCAACGGGGTAAAAGGGATGCAGCTACAGCCCTATTTAACCTGTGTATCTATCAGGGCAACAAGGGCAAAGCTGTTAGAGCTGGATTGATCCCTGTACTATTAGGACTAGTCACTGAGACTGAAAGTGGTATGATGGATGAGGCCCTTGCTATATTGGCAATTCTCTCGAGCCATNCTGAGGGCAAGACTGCAATTAGTTCAGCCAACGCCATTTCCATGCTAGGTGGAGTAATCAGAAATGGATCACCAGGGAACAAGGAAAATGCTTGTGCTGTCCTGTGCATCTCTGCAATGTTGAACCAGAACAACAGCATCTTTGCTTGAGCGCAGGAACCAGGGAATTGTGACCCTTGGTGGAGGAACTTAGCCAAAGTGGCACAGACAGAGGAAAGAGGAAAGCATTCACCTTTCTGTGGCGAATGGAACGGGTTTTTATGCCGAAGTTAAGCCCAAACCCAGCAGGGGCCTGGGCCAAGTTATGGCCTGGCCACGCTTAAGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6243#0 -CTGGGGCAATTCCAGCTCTTGTGCTTCTGTTGAGTAATGGAAGTCAACGGGGTAAAAGG 59
consensus_6243#2 -CTGGGGCAATTCCAGCTCTTGTGCTTCTGTTGAGTAATGGAAGTCAACGGGGTAAAAGG 59
consensus_6243#1 GCGAAATTGGTGCCGGGCCCCCCCCTCAAGGTGCACGGTTCNGATAAGCTTCTTAAGTGA 60
* * ** * * ** * ** * * * * *** *
consensus_6243#0 GATGCAGCTACAGCCCTATTTAACCTGTGTATCTAT-CAGGGCAACAAGGGCAAAGCT-- 116
consensus_6243#2 GATGCAGCTACAGCCCTATTTAACCTGTGTATCTAT-CAGGGCAACAAGGGCAAAGCT-- 116
consensus_6243#1 GCCCAAGGGCCAGCCAACAGCAAAGAGGAAAGCCATTCAGCTTTTTGAGGGAAAGGATCG 120
* ** ***** ** * * * ** *** **** ** * *
consensus_6243#0 GTTAGAGCTGGATTGATCCCTGTACTATTGGGACTAGTCACTGAGACTGAAAGTGGTATG 176
consensus_6243#2 GTTAGAGCTGGATTGATCCCTGTACTATTAGGACTAGTCACTGAGACTGAAAGTGGTATG 176
consensus_6243#1 GTTTTTTATCACACAAGTCAAGCCCAACCCCAACCAAAGGCCATGGCCCAAGGTCATGCG 180
*** * * * * * * ** * * * * ** ** * *
consensus_6243#0 ATGGATGAGGCCCTTGCT-ATATTGGCAATTCTCTCGAG--CCATCCTGAGGGCAAGACT 233
consensus_6243#2 ATGGATGAGGCCCTTGCT-ATATTGGCAATTCTCTCGAG--CCATNCTGAGGGCAAGACT 233
consensus_6243#1 CATGCACAGTCTCAAGCTCAGGTTCAGGCTTTTAACGAAGCTCAATCTCAGGTAGAGA-T 239
* ** * * *** * ** ** * *** ** ** *** *** *
consensus_6243#0 GCAATTAGTTCAGCCAACGCCATTCCAA--TGCTAGTTGGAGTAATCAGAAATGGATCAG 291
consensus_6243#2 GCAATTAGTTCAGCCAACGCCATTTCCA--TGCTAGGTGGAGTAATCAGAAATGGATCAC 291
consensus_6243#1 GCAGGTGG---AGCAATTGTTGCTTCCAACTACTTCCCATCTTTTTGATACACGAAGCGG 296
*** * * *** * * * * * * ** * * * * * * * *
consensus_6243#0 CAAGGAACAAGGAAAATGCTGCTGCTGTTCTGGTGCATCTCTGCAATGGTGAACAGCAGC 351
consensus_6243#2 CAGGGAACAAGGAAAATGCTTGTGCTGTCCTG-TGCATCTCTGCAATGTTGAACCAGAAC 350
consensus_6243#1 TTGATAAGCAGGATGTTATTCATAGTTAGTGG--GTTTCTTTCTTATTCATAGTCAGCG- 353
** **** * * * * * * *** * ** *
consensus_6243#0 AACAGCATCTT-GCTGAAGCGCAGGAGC-AGGGAATTGTG------ACCCT-GTTGGAGG 402
consensus_6243#2 AACAGCATCTTTGCTTGAGCGCAGGAACCAGGGAATTGTG------ACCCTTGGTGGAGG 404
consensus_6243#1 GCCTGTTTTTTTGGCTGAGGCTACCAGTTGGAAGATTGCCTGCAATGCCTAGCGTGGAGG 413
* * * ** * ** * * * **** ** ******
consensus_6243#0 AACTAGCCAAAAGTGGCACAGACAGAGGAAAGAGGAAAGCAAT-CCAGCTTCTTGAGC-- 459
consensus_6243#2 AACTTAGCCAAAGTGGCACAGACAGAGGAAAGAGGAAAGCATT-CACCTTTCTGTGGC-- 461
consensus_6243#1 TGTGTGGTTTTTGTTAAGCAATTAGAATCAGGAAGTGCCCTTAGCGTGATTCTAGGGCCA 473
** ** *** * ** * * * **** **
consensus_6243#0 -GAATG-------AATCGGTTTCTTATGCAGCAAAGTCA--AGCCCAAGCCCAAGCAGAG 509
consensus_6243#2 -GAATG-------GAACGGGTTTTTATGC--CGAAGTTA--AGCCCAAACCCA-GCAGGG 508
consensus_6243#1 TGAGCGTGGTGACAATTGAGTTTTGAGGTTGTGGAACTGTTAACCTGTGTGCC-GTTTGT 532
** * * * ** * * * * * ** * *
consensus_6243#0 GCCATGGCACAAGCTCATGCGCATGCACAGTCTCAAGCTCAGGTTCAGGCTCTTAACGAA 569
consensus_6243#2 GCC-TGGGCCAAGTT-ATG-GCCTGGCCACGCTTAAGTT--------------------- 544
consensus_6243#1 ACAATGCACCCAGTG-ATGAATGTTGGGACCCTCGAGTTTTAGGGAGGTGCCATTTTACT 591
* ** * ** *** * * ** ** *
consensus_6243#0 GCTCAATCTCAGGTAGAGATGCAGGTGGAGCAATTGTTGCTTCCAACTACTTCACATCTT 629
consensus_6243#2 ------------------------------------------------------------
consensus_6243#1 TGTACCCGGTGCCTATTACAGGACTGGTTTGTGGCTTCCAAGGTTGATAATTTTACTTGC 651
consensus_6243#0 TCTGATAGACGAGACGGTTGATAAGCAGGATGTTATTCATAGTTAGTGGGTTTCTTTTTT 689
consensus_6243#2 ------------------------------------------------------------
consensus_6243#1 CTGACTCACAGTTTCAGTGAAAAAAAAAAAAAAAAA------------------------ 687
consensus_6243#0 ATTCATAGTCAGCGGCTTGTTTTTTTGGCTGAGGCTAGCAGTTGGAAGATCGCCTGCAAT 749
consensus_6243#2 ------------------------------------------------------------
consensus_6243#1 ------------------------------------------------------------
consensus_6243#0 GCCTAGCGTGGAGGTGTGTGGTTTTTGTTAAGCAATTAGAATCAGGAAGTGCCATTAGCG 809
consensus_6243#2 ------------------------------------------------------------
consensus_6243#1 ------------------------------------------------------------
consensus_6243#0 TGATTCTAGGGCCATGAGCTTCTTGACAATTGAGTTTTGAGGTCGTGGAACTGTTAACCT 869
consensus_6243#2 ------------------------------------------------------------
consensus_6243#1 ------------------------------------------------------------
consensus_6243#0 GTGTGCCGTTTGTACAATGCACCCAGTGATGAATGTTGGGACCCTCGAGTTTTAGGGAGG 929
consensus_6243#2 ------------------------------------------------------------
consensus_6243#1 ------------------------------------------------------------
consensus_6243#0 TGCCATTCTACTTGTACCCGGTGCCTATTACAGGACTGGTCTGTGGCTTCCAAGGTTGAT 989
consensus_6243#2 ------------------------------------------------------------
consensus_6243#1 ------------------------------------------------------------
consensus_6243#0 AATTTTACTTGCCTGACTCAC 1010
consensus_6243#2 ---------------------
consensus_6243#1 ---------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||