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Oryza sativa
cluster # 6244 cluster # 6244       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6244#0 length = 1586 sequences # 4  

consensusID : consensus_6244#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1586
fasta sequence
                              [CATATATTAACAAAGGTGCGGCCTCTAACGAGGTTCAACGCTTCTGCACCTCTGATTTTCACATGGTATCAGAGCCTATCCATCCACAAAATCGCATCTAATCCAACTCATGGCGAGTTCGTCGAAGACGGCGGCCGGGAATCCTCTCGGCGGGAACGCGATCTCGGAGAAACTCTCCAAATCAAACCATGCGCTATGGAAAGCGCAGGTCATGGCGGCTGTACGAGGAGCTCGCCTTGAGGGGCATCTCACCGGTGCCACCAAAACTCCCAACGCCCTGATCACGACGACAGCAGGCGACAAGGGAGAGAAAGAAGTCACTGTTCGCAATCCAGAATTTGATGATTGGGTTGCAACCGATCAGCAGGTTCTAGGATTCCTGCTCTCCACCCTAGCTAGAGACGTTCTGGCACAGGTGGCCACCTGCGGCACGGCTGCAGCAGCATGGCAGATGCTGGAGGAGATGTACTCCTCCGTCACGAGGGCGCGCTTCATCAACACTCGCATCGCTCTCTCCAACACCAAGAAGGGCACTCTCTCCATCAACGAGTATGTCTCCAAGATGAAGGCCCTCGCTGATGAGATGACGGCTGCCGGCAAGATCGTTGATGACGATGATCTCATCTCCTACATCATCGCCGGCCTCGACGACACGTATGAACCTGTCATCTCCACCATCGTTGGCAAGGACACCATGACGCTGGGAGAAGCCTACTCTCAGCTGCTCAGCTTTGAGCAGCGTCTCGCGCTTCGTCACGGTGGAGACTCTTCTGTCAATTTGGCGAACCGAGGACGTGGCGGTGGTGGAGGACAACAACGCGGCGGCAACACCGGCAACGGCGGCCGCGGCCGTGGCGGCAACAACAATGGCGCTAACCGCGGCAGGGGACGCGGCAACAATGGCGGCGCACGACCACCGGGAGGCGTCGACAACAGACCTAAATGTCAACTCTGTTACAAGAGGGGACACACGGTAATCAACTGCTGGTATCGCTATGATGAAGATTTTGTTCCCGATGAAAAATATGCAGGATCGGCAACATCTTATGGGATTGATACAAATTGGTACGTCGACACGAGTGCGACGGACCATGTGACTGGCGAACTGGACAAGCTCACGGTTCGCGATCGCTACAAGGGGCAAGATCAAGTTCACACCGCAAGCGGTGCAGGATCTGGCCACGAAGAAACTTCTGTTTAGGGGACCATGCCGGGGGCGACTGTACGCTCTTCCATCTTCATCACCTCATGAACGTCCTCGTCCTCTAAAAGAAGCCTTTGGAGCCATCAAGCCATCCTTTGAGCGATGGCACAGTCGCCTGGGTCATCCAGCCTCTCCAATTGTG-GAGAAAGTCATTAGCAAAAATAATCTTCCTTGTTTAGCTGAGTCAAATAAACAGTCGGTTTGTGATGCATGTCAACAGGGTAAAAGTCATCAATTGCCCTATTCTAGATCTTCTAGTATGTCGAGTCATCCTTTGGAACTTATTTATTCTGATGTTTGGGGTCCTGCCCTCACTTCTGTTGGGGGCAAACAATATTATGTGAGCTTTATTGGTGATTATAGTAAATTTACTTGGCTTTAT]

[+] EMBL AK069268             [CATATATTAACAAAGGTGCGGCCTCTAACGAGGTTCAACGCTTCTGCACCTCTGATTTTCACATGGTATCAGAGCCTATCCATCCACAAAATCGCATCTAATCCAACTCATGGCGAGTTCGTCGAAGACGGCGGCCGGGAATCCTCTCGGCGGGAACGCGATCTCGGAGAAACTCTCCAAATCAAACCATGCGCTATGGAAAGCGCAGGTCATGGCGGCTGTACGAGGAGCTCGCCTTGAGGGGCATCTCACCGGTGCCACCAAAACTCCCAACGCCCTGATCACGACGACAGCAGGCGACAAGGGAGAGAAAGAAGTCACTGTTCGCAATCCAGAATTTGATGATTGGGTTGCAACCGATCAGCAGGTTCTAGGATTCCTGCTCTCCACCCTAGCTAGAGACGTTCTGGCACAGGTGGCCACCTGCGGCACGGCTGCAGCAGCATGGCAGATGCTGGAGGAGATGTACTCCTCCGTCACGAGGGCGCGCTTCATCAACACTCGCATCGCTCTCTCCAACACCAAGAAGGGCACTCTCTCCATCAACGAGTATGTCTCCAAGATGAAGGCCCTCGCTGATGAGATGACGGCTGCCGGCAAGATCGTTGATGACGATGATCTCATCTCCTACATCATCGCCGGCCTCGACGACACGTATGAACCTGTCATCTCCACCATCGTTGGCAAGGACACCATGACGCTGGGAGAAGCCTACTCTCAGCTGCTCAGCTTTGAGCAGCGTCTCGCGCTTCGTCACGGTGGAGACTCTTCTGTCAATTTGGCGAACCGAGGACGTGGCGGTGGTGGAGGACAACAACGCGGCGGCAACACCGGCAACGGCGGCCGCGGCCGTGGCGGCAACAACAATGGCGCTAACCGCGGCAGGGGACGCGGCAACAATGGCGGCGCACGACCACCGGGAGGCGTCGACAACAGACCTAAATGTCAACTCTGTTACAAGAGGGGACACACGGTAATCAACTGCTGGTATCGCTATGATGAAGATTTTGTTCCCGATGAAAAATATGCAGGATCGGCAACATCTTATGGGATTGATACAAATTGGTACGTCGACACGAGTGCGACGGACCATGTGACTGGCGAACTGGACAAGCTCACGGTTCGCGATCGCTACAAGGGGCAAGATCAAGTTCACACCGCAAGCGGTGCAGGATCTGGCCACGAAGAAACTTCTGTTTAGGGGACCATGCCGGGGGCGACTGTACGCTCTTCCATCTTCAT ACCTCATGAACGTCCTCGTCCTCTAAAAGAAGCCTTTGGAGCCATCAAGCCATCCTTTGAGCGATGGCACAGTCGCCTGGGTCATCCAGCCTCTCCAATTGTG GAGAAAGTCATTAGCAAAAATAATCTTCCTTGTTTAGCTGAGTCAAATAAACAGTCGGTTTGTGATGCATGTCAACAGGGTAAAAGTCATCAATTGCCCTATTCTAGATCTTCTAGTATGTCGAGTCATCCTTTGGAACTTATTTATTCTGATGTTTGGGGTCCTGCCCTCACTTCTGTTGGGGGCAAACAATATTATGTGAGCTTTATTGGTGATTATAGTAAATTTACTTGGCTTTAT]
[+] EMBL CF322909             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GGCAACAACAATGGCGCTAACCGCGGCAGGGGACGCGGCAACAATGGCGGCGCACGACCACCGGGAGGCGTCGACAACAGACCTAAATGTCAACTCTGTTACAAGAGGGGACACACGGTAATCAACTGCTGGTATCGCTATGATGAAGATTTTGTTCCCGATGAAAAATATGCAGGATCGGCAACATCTTATGGGATTGATACAAATTGGTACGTCGACACGAGTGCGACGGACCATGTGACTGGCGAACTGGACAAGCTCACGGTTCGCGATCGCTACAAGGGGCAAGATCAAGTTCACACCGCAAGCGGTGCAGGATCTGGCCACGAAGAAACTTCTGTTTAGGGGACCATGCCGGGGGCGACTGTACGCTCTTCCATCTTCATCACCTCATGAACGTCCTCGTCCTCTAAAAGAAGCCTTTGGAGCCATCAAGCCATCCTTTGAGCGATGGCACAGTCGCCTGGGTCATCCAGCCTCTCCAATTGTG GAGAAAGTCATTAGCAAAAATAATCTTCCTTGTTTAGCTGAGTCAAATAAACAGTCGGTTTGTGATGCATGTCAACAGGGTAAAAGTCATCAATTGCCCTATTCTAGATCTTCTAGTATGTCGAGTCATCCTTTGGAACTTATT                                                                                                ]
[+] EMBL CF322453             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GGCAACAACAATGGCGCTAACCGCGGCAGGGGACGCGGCAACAATGGCGGCGCACGACCACCGGGAGGCGTCGACAACAGACCTAAATGTCAACTCTGTTACAAGAGGGGACACACGGTAATCAACTGCTGGTATCGCTATGATGAAGATTTTGTTCCCGATGAAAAATATGCAGGATCGGCAACATCTTATGGGATTGATACAAATTGGTACGTCGACACGAGTGCGACGGACCATGTGACTGGCGAACTGGACAAGCTCACGGTTCGCGATCGCTACAAGGGGCAAGATCAAGTTCACACCGCAAGCGGTGCAGGATCTGGCCACGAAGAAACTTCTGTTTAGGGGACCATGCCGGGGGCGACTGTACGCTCTTCCATCTTCATCACCTCATGAACGTCCTCGTCCTCTAAAAGAAGCCTTTGGAGCCATCAAGCCATCCTTTGAGCGATGGCACAGTCGCCTGGGTCATCCAGCCTCTCCAATTGTGNGAGAAAGTCATTAGCAAAAATAATCTTCCTTGTTTAGCTGAGTC AATAAACAGTCGGTTTGTGATGCATGTCAACAGGGTAAAAGTCATCAATTGCCCTATTCTAGATCTTCTAGTATGTCGAGTCATC                                                                                                              ]
[+] EMBL CF324347             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GGCAACAACAATGGCGCTAACCGCGGCAGGGGACGCGGCAACAATGGCGGCGCACGACCACCGGGAGGCGTCGACAACAGACCTAAATGTCAACTCTGTTACAAGAGGGGACACACGGTAATCAACTGCTGGTATCGCTATGATGAAGATTTTGTTCCCGATGAAAAATATGCAGGATCGGCAACATCTTATGGGATTGATACAAATTGGTACGTCGACACGAGTGCGACGGACCATGTGACTGGCGAACTGGACAAGCTCACGGTTCGCGATCGCTACAAGGGGCAAGATCAAGTTCACACCGCAAGCGGTGCAGGATCTGGCCACGAAGAAACTTCTGTTTAGGGGACCATGCCGGGGGCGACTGTACGCTCTTCCATCTTCATCACCTCATGAACGTCCTCGTCCTCTAAAAGAAGCCTTTGGAGCCATCAAGCCATCCT                                                                                                                                                                                                                                                                                                ]


>consensus_6244#0 CATATATTAACAAAGGTGCGGCCTCTAACGAGGTTCAACGCTTCTGCACCTCTGATTTTC ACATGGTATCAGAGCCTATCCATCCACAAAATCGCATCTAATCCAACTCATGGCGAGTTC GTCGAAGACGGCGGCCGGGAATCCTCTCGGCGGGAACGCGATCTCGGAGAAACTCTCCAA ATCAAACCATGCGCTATGGAAAGCGCAGGTCATGGCGGCTGTACGAGGAGCTCGCCTTGA GGGGCATCTCACCGGTGCCACCAAAACTCCCAACGCCCTGATCACGACGACAGCAGGCGA CAAGGGAGAGAAAGAAGTCACTGTTCGCAATCCAGAATTTGATGATTGGGTTGCAACCGA TCAGCAGGTTCTAGGATTCCTGCTCTCCACCCTAGCTAGAGACGTTCTGGCACAGGTGGC CACCTGCGGCACGGCTGCAGCAGCATGGCAGATGCTGGAGGAGATGTACTCCTCCGTCAC GAGGGCGCGCTTCATCAACACTCGCATCGCTCTCTCCAACACCAAGAAGGGCACTCTCTC CATCAACGAGTATGTCTCCAAGATGAAGGCCCTCGCTGATGAGATGACGGCTGCCGGCAA GATCGTTGATGACGATGATCTCATCTCCTACATCATCGCCGGCCTCGACGACACGTATGA ACCTGTCATCTCCACCATCGTTGGCAAGGACACCATGACGCTGGGAGAAGCCTACTCTCA GCTGCTCAGCTTTGAGCAGCGTCTCGCGCTTCGTCACGGTGGAGACTCTTCTGTCAATTT GGCGAACCGAGGACGTGGCGGTGGTGGAGGACAACAACGCGGCGGCAACACCGGCAACGG CGGCCGCGGCCGTGGCGGCAACAACAATGGCGCTAACCGCGGCAGGGGACGCGGCAACAA TGGCGGCGCACGACCACCGGGAGGCGTCGACAACAGACCTAAATGTCAACTCTGTTACAA GAGGGGACACACGGTAATCAACTGCTGGTATCGCTATGATGAAGATTTTGTTCCCGATGA AAAATATGCAGGATCGGCAACATCTTATGGGATTGATACAAATTGGTACGTCGACACGAG TGCGACGGACCATGTGACTGGCGAACTGGACAAGCTCACGGTTCGCGATCGCTACAAGGG GCAAGATCAAGTTCACACCGCAAGCGGTGCAGGATCTGGCCACGAAGAAACTTCTGTTTA GGGGACCATGCCGGGGGCGACTGTACGCTCTTCCATCTTCATCACCTCATGAACGTCCTC GTCCTCTAAAAGAAGCCTTTGGAGCCATCAAGCCATCCTTTGAGCGATGGCACAGTCGCC TGGGTCATCCAGCCTCTCCAATTGTGGAGAAAGTCATTAGCAAAAATAATCTTCCTTGTT TAGCTGAGTCAAATAAACAGTCGGTTTGTGATGCATGTCAACAGGGTAAAAGTCATCAAT TGCCCTATTCTAGATCTTCTAGTATGTCGAGTCATCCTTTGGAACTTATTTATTCTGATG TTTGGGGTCCTGCCCTCACTTCTGTTGGGGGCAAACAATATTATGTGAGCTTTATTGGTG ATTATAGTAAATTTACTTGGCTTTAT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)