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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6245#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1482 fasta sequence
[TCAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGCCTGATTAATGTCTCCCCATATGGGACGTTTCACCACGTCGGGCTAAATTAAAAGCATCGGATTTTTTTACACCATTATTTTTGTGAGCACCAAGAAATACAATGGAATTTCTACCTCCGTAAAAGCCATTTGGGTATTGGGTAAAGATATAAAAAACTGCCTCAATTTTTCTCTACCTTGATGATCATGCCACAAAAGCCTTAAAAATTTCAACAGAAGACCTTCGATACAGAATGAACATTAGATGTACATCTCTAGGGACATGTGGATCCAGACCCTAGGGATGCCGACCAGTTGGATCTCCTGCTTCCACATTCGGTGAAAAATTGCACATTCCACACAAGATAC-------AGATGCCAAAGTCAGTCCGTCAAAATCATGTCAGTTGCATATGCAATGCCAAAATTGATAAAGGGCTCCTGTCCTGCTCCATTGAAATCTCTACTTGTAGCCGACTTCTTTCATCAAGTGTCGATACTTCGCCCACGTATCGCACGTTGCCATAAGAATGCTATTGATTCTTGAAAGCTCAATTGTAACCTCTGCTGAACAAGCCATCGAGCAAGGCAACGCTGAATTCCTCGAGTGATTGGCCGCATGAAGGATGGATCTCTTTGTTGATAAAGTAAACCAACCTCTGACATGGCGAGTGCAGCAGGATCATCAAATATTTCCAGGCTGTCATCTGCTAGATAATTCACCCCGAACTCAGTGTTTACAAAAGATTGCACGAAATCCATTAGTTGAATCTTTGCCCACTTATAGGATGCATCAGGGTTACCCCCCTGAGGCGGATGTCTCCATGGTGCACCGAAAGACAATCTATTTTCTGGTACTTTTCCCTCACGGACATCAGATGCGAACTTCTGTACCATTCCTAATGCTGCCTCCATTGCAGGATTCACAACAGAAACTTGCAAGTGTGCCAGGTATATGTCGATAATTTCCTCGATATTTTGATCATGCAAAACCCCTGTGCTATCTGCATTCTGCTTCAACATGTAAATCTCAGATAATTGCCGTGGGTTTGTCCCAAGAACCTCATCCACAACTTTCCACTACAACTCCTTCTCACTGAAGAATTCAGGGACCATATGCAACTTAGCTTCCTGTGGTGTCCAACCAAATGTCTCACGAGAAATGAATATATTAGGAAAACCAAAATCAACAAATGCTTGTGAAGAATAGTAGCCATCTGAGGTAGACATAATGACCGGCAAGCACTGTTCGTTGGCACCGAGTGCGATCACCCTCCAAATCAAGCTATCATGATACATTGCCGCAGGCACCATCGTATCATCCTTGCAAGTCGCCTTCCTCAGCACATCCACATTGTTCAGCACCAGCTTTGGCTGAAAGAAATCCACCTCAGCCGCACCCGAGAGCACATCCAGCAACAGGCATGGCCAGTCGGTTGCGGAATTGGCCAGTGGCCTCGAGAACCGGCCA]
[+] EMBL CF322473 [TCAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGCCTGATTAATGTCTCCCCATATGGGACGTTTCACCACGTCGGGCTAAATTAAAAGCATCGGATTTTTTTACACCATTATTTTTGTGAGCACCAAGAAATACAATGGAATTTCTACCTCCGTAAAAGCCATTTGGGTATTGGGTAAAGATATAAAAAACTGCCTCAATTTTTCTCTACCTTGATGATCATGCCACAAAAGCCTTAAAAATTTCAACAGAAGACCTTCGATACAGAATGAACATTAGATGTACATCTCTAGGGACATGTGGATCCAGACCCTAGGGATGCCGACCAGTTGGATCTCCTGCTTCCACATTCGGTGAAAAATTGCACATTCCACACAAGATAC AGATGCCAAAGTCAGTCCGTCAAAATCATGTCAGTTGCATATGCAATGCCAAAATTGATAAAGGGCTCCTGTCCTGCTCCATTGAA ]
[-] EMBL OS0671A [ gatTGTACATCTCTAGGGACATGTGGATCCAGACCCTAGGGATGCCGACCAGTTGGATCTCCTGCTTCCACATTCGGTGAAAAATTGCACATTCAACACAAGATACCTGAAATAGATGCAAAAGTCAGTCCGTCAAAATCATGTCAGTTGCATATGCAATGCCAAAATTGATAAAGGGCTCCTGTCCTGCTCCATTGAAATCTCTACTTGTAGCCGACTTCTTTCATCAAGTGTCGATACTTCGCCCACGTATCGCACGTTGCCATAAGAATGCTATTGATTCTTGAAAGCTCAATTGTAACCTCTGCTGAACAAGCCATCGAGCAAGGCAACGCTGAATTCCTCGAGTGATTGGCCGCATGAAGGATGGATCTCTTTGTTGATAAAGTAAACCAACCTCTGACATGGCGAGTGCAGCAGGATCATCAAATATT ]
[+] EMBL CB668828 [ CGCATGAAGGATGGATCTCTTTGTTGATAAAGTAAACCAACCTCTGACATGGCGAGTGCAGCAGGATCATCAAATATTTCCAGGCTGTCATCTGCTAGATAATTCACCCCGAACTCAGTGTTTACAAAAGATTGCACGAAATCCATTAGTTGAATCTTTGCCCACTTATAGGATGCATCAGGGTTACCCCCCTGAGGCGGATGTCTCCATGGTGCACCGAAAGACAATCTATTTTCTGGTACTTTTCCCTCACGGACATCAGATGCGAACTTCTGTACCATTCCTAATGCTGCCTCCATTGCAGGATTCACAACAGAAACTTGCAAGTGTGCCAGGTATATGTCGATAATTTCCTCGATATTTTGATCATGCAAAACCCCTGTGCTATCTGCATTCTGCTTCAACATGTAAATCTCAGATAATTGCCGTGGGTTTGTCCCAAGAACCTCATCCACAACTTTCCACTACAACTCCTTCTCACTGAAGAATTCAGGGACCATATGCAACTTAGCTTCCTGTGGTGTCCAACCAAATGTCTCACGAGAAATGAATATATTAGGAAAACCAAAATCAACAAATGCTTGTGAAGAATAGTAGCCATCTGAGGTAGACATAATGACCGGCAAGCACTGTTCGTTGGCACCGAGTGCGATCACCCTCCAAATCAAGCTATCATGATACATTGCCGCAGGCACCATCGTATCATCCTTGCAAGTCGCCTTCCTCAGCACATCCACATTGTTCAGCACCAGCTTTGGCTGAAAGAAATCCACCTCAGCCGCACCCGAGAGCACATCCAGCAACAGGCATGGCCAGTCGGTTGCGGAATTGGCCAGTGGCCTCGAGAACCGGCCA]
consensusID : consensus_6245#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 728 fasta sequence
[ATGTCTCCCCATATGGGACGTTNCACCACGTCGGGCTAAATTAGAAGCATCGGATTTTTTTACNCCCATTATTTTGTGAGCACCCAAGAAATACAATGGAATTTCTACCTCCGTAAAAGCCATTTGGGTATTGGGTAAAGATATAAAAAACTACCTCAATTTTTCTCTACCTTGATGATCATGCAACAAAAGCATAAAAAATTTCAACAGAAGACCTTTGATACAGAATGAACATTAGATGTACATCTCTAGGGACATGTGGATCCAGACCCTAGGGATGCCGACCAGTTGGATCTCCTGCTAAAATTGCACATTCAACACAAGATACCTGAAATAGATGCAAAAGTCAGTCCGTCAAAATCATGTCAGTTGCATATGCAATGCCAAAATTGATAAAGGGCTCCTGTCCTGCTCCATTGAAATCTCTACTTGTAGCCGACTTCTTTCATCAAGTGTCGATAGCTTCGCCCACGTATCGCGCGTTGCCATAAGAATGCTATTGATTCTTGAAAGCTCAATTGTAACCTCTGCTGAACAAGCCATCGAGCAAGGCAACGCTGAATTCCTCGAGTGATTGGCCGCATGAAGGATGGATCTCTTTGTTGATAAAGTAAACCAACCTCTGACATGGCGAGTGCAGCAGGATCATCAAATATTTCCAGGCTGTCATCTGCTAGATATTCACCCCGAACTCAGTGTTTACAAAAGATTGCACGAAATCCCCCCTT]
[-] EMBL CA765718 [ATGTCTCCCCATATGGGACGTTNCACCACGTCGGGCTAAATTAGAAGCATCGGATTTTTTTACNCCCATTATTTTGTGAGCACCCAAGAAATACAATGGAATTTCTACCTCCGTAAAAGCCATTTGGGTATTGGGTAAAGATATAAAAAACTACCTCAATTTTTCTCTACCTTGATGATCATGCAACAAAAGCATAAAAAATTTCAACAGAAGACCTTTGATACAGAATGAACATTAGATGTACATCTCTAGGGACATGTGGATCCAGACCCTAGGGATGCCGACCAGTTGGATCTCCTGCTAAAATTGCACATTCAACACAAGATACCTGAAATAGATGCAAAAGTCAGTCCGTCAAAATCATGTCAGTTGCATATGCAATGCCAAAATTGATAAAGGGCTCCTGTCCTGCTCCATTGAAATCTCTACTTGTAGCCGACTTCTTTCATCAAGTGTCGATAGCTTCGCCCACGTATCGCGCGTTGCCATAAGAATGCTATTGATTCTTGAAAGCTCAATTGTAACCTCTGCTGAACAAGCCATCGAGCAAGGCAACGCTGAATTCCTCGAGTGATTGGCCGCATGAAGGATGGATCTCTTTGTTGATAAAGTAAACCAACCTCTGACATGGCGAGTGCAGCAGGATCATCAAATATTTCCAGGCTGTCATCTGCTAGATATTCACCCCGAACTCAGTGTTTACAAAAGATTGCACGAAATCCCCCCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6245#0 TCAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGCCTGATTAATGTCTCCCCATATGGG 60
consensus_6245#1 -------------------------------------------ATGTCTCCCCATATGGG 17
*****************
consensus_6245#0 ACGTTTCACCACGTCGGGCTAAATTAAAAGCATCGGATTTTTTTACACCATTATTTTTGT 120
consensus_6245#1 ACGTTNCACCACGTCGGGCTAAATTAGAAGCATCGGATTTTTTTACNCCCATTATTTTGT 77
***** ******************** ******************* ** * ******
consensus_6245#0 GAGCACC-AAGAAATACAATGGAATTTCTACCTCCGTAAAAGCCATTTGGGTATTGGGTA 179
consensus_6245#1 GAGCACCCAAGAAATACAATGGAATTTCTACCTCCGTAAAAGCCATTTGGGTATTGGGTA 137
******* ****************************************************
consensus_6245#0 AAGATATAAAAAACTGCCTCAATTTTTCTCTACCTTGATGATCATGCCACAAAAGCCTTA 239
consensus_6245#1 AAGATATAAAAAACTACCTCAATTTTTCTCTACCTTGATGATCATGCAACAAAAGCATAA 197
*************** ******************************* ******** * *
consensus_6245#0 AAAATTTCAACAGAAGACCTTCGATACAGAATGAACATTAGATGTACATCTCTAGGGACA 299
consensus_6245#1 AAAATTTCAACAGAAGACCTTTGATACAGAATGAACATTAGATGTACATCTCTAGGGACA 257
********************* **************************************
consensus_6245#0 TGTGGATCCAGACCCTAGGGATGCCGACCAGTTGGATCTCCTGCTTCCACATTCGGTGAA 359
consensus_6245#1 TGTGGATCCAGACCCTAGGGATGCCGACCAGTTGGATCTCCTGCT--------------A 303
********************************************* *
consensus_6245#0 AAATTGCACATTCCACACAAGATAC-------AGATGCCAAAGTCAGTCCGTCAAAATCA 412
consensus_6245#1 AAATTGCACATTCAACACAAGATACCTGAAATAGATGCAAAAGTCAGTCCGTCAAAATCA 363
************* *********** ****** *********************
consensus_6245#0 TGTCAGTTGCATATGCAATGCCAAAATTGATAAAGGGCTCCTGTCCTGCTCCATTGAAAT 472
consensus_6245#1 TGTCAGTTGCATATGCAATGCCAAAATTGATAAAGGGCTCCTGTCCTGCTCCATTGAAAT 423
************************************************************
consensus_6245#0 CTCTACTTGTAGCCGACTTCTTTCATCAAGTGTCGATA-CTTCGCCCACGTATCGCACGT 531
consensus_6245#1 CTCTACTTGTAGCCGACTTCTTTCATCAAGTGTCGATAGCTTCGCCCACGTATCGCGCGT 483
************************************** ***************** ***
consensus_6245#0 TGCCATAAGAATGCTATTGATTCTTGAAAGCTCAATTGTAACCTCTGCTGAACAAGCCAT 591
consensus_6245#1 TGCCATAAGAATGCTATTGATTCTTGAAAGCTCAATTGTAACCTCTGCTGAACAAGCCAT 543
************************************************************
consensus_6245#0 CGAGCAAGGCAACGCTGAATTCCTCGAGTGATTGGCCGCATGAAGGATGGATCTCTTTGT 651
consensus_6245#1 CGAGCAAGGCAACGCTGAATTCCTCGAGTGATTGGCCGCATGAAGGATGGATCTCTTTGT 603
************************************************************
consensus_6245#0 TGATAAAGTAAACCAACCTCTGACATGGCGAGTGCAGCAGGATCATCAAATATTTCCAGG 711
consensus_6245#1 TGATAAAGTAAACCAACCTCTGACATGGCGAGTGCAGCAGGATCATCAAATATTTCCAGG 663
************************************************************
consensus_6245#0 CTGTCATCTGCTAGATAATTCACCCCGAACTCAGTGTTTACAAAAGATTGCACGAAATCC 771
consensus_6245#1 CTGTCATCTGCTAGATA-TTCACCCCGAACTCAGTGTTTACAAAAGATTGCACGAAATCC 722
***************** ******************************************
consensus_6245#0 ATTAGTTGAATCTTTGCCCACTTATAGGATGCATCAGGGTTACCCCCCTGAGGCGGATGT 831
consensus_6245#1 CCCCTT------------------------------------------------------ 728
*
consensus_6245#0 CTCCATGGTGCACCGAAAGACAATCTATTTTCTGGTACTTTTCCCTCACGGACATCAGAT 891
consensus_6245#1 ------------------------------------------------------------
consensus_6245#0 GCGAACTTCTGTACCATTCCTAATGCTGCCTCCATTGCAGGATTCACAACAGAAACTTGC 951
consensus_6245#1 ------------------------------------------------------------
consensus_6245#0 AAGTGTGCCAGGTATATGTCGATAATTTCCTCGATATTTTGATCATGCAAAACCCCTGTG 1011
consensus_6245#1 ------------------------------------------------------------
consensus_6245#0 CTATCTGCATTCTGCTTCAACATGTAAATCTCAGATAATTGCCGTGGGTTTGTCCCAAGA 1071
consensus_6245#1 ------------------------------------------------------------
consensus_6245#0 ACCTCATCCACAACTTTCCACTACAACTCCTTCTCACTGAAGAATTCAGGGACCATATGC 1131
consensus_6245#1 ------------------------------------------------------------
consensus_6245#0 AACTTAGCTTCCTGTGGTGTCCAACCAAATGTCTCACGAGAAATGAATATATTAGGAAAA 1191
consensus_6245#1 ------------------------------------------------------------
consensus_6245#0 CCAAAATCAACAAATGCTTGTGAAGAATAGTAGCCATCTGAGGTAGACATAATGACCGGC 1251
consensus_6245#1 ------------------------------------------------------------
consensus_6245#0 AAGCACTGTTCGTTGGCACCGAGTGCGATCACCCTCCAAATCAAGCTATCATGATACATT 1311
consensus_6245#1 ------------------------------------------------------------
consensus_6245#0 GCCGCAGGCACCATCGTATCATCCTTGCAAGTCGCCTTCCTCAGCACATCCACATTGTTC 1371
consensus_6245#1 ------------------------------------------------------------
consensus_6245#0 AGCACCAGCTTTGGCTGAAAGAAATCCACCTCAGCCGCACCCGAGAGCACATCCAGCAAC 1431
consensus_6245#1 ------------------------------------------------------------
consensus_6245#0 AGGCATGGCCAGTCGGTTGCGGAATTGGCCAGTGGCCTCGAGAACCGGCCA 1482
consensus_6245#1 ---------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||