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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6247#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1690 fasta sequence
[CGGCGGCGGTTTGGTTTCCCTCTTGTTTGTATTTTAATCCGTCGTGGGTGGGTGATGGAGGTGGAGCGTCGTGGTGGTGGGGAGGTGAACGGGGTGGTGGAGATGGAGGACGCGGTGGGGATACTGGTGGACTACCTGGTGCGGCCGGCGCTGCGGAAGGGGAGCAGGATGACGCCGGAGAACCAGGCCGACGTCGCGCGCCAGGTTCATATGGCAGTCATTCTGTATAACTATTACCACCGGAAGCAGTTCCCACAGCTTGCTTTTGCTGATGCAATGAGGTTCTTCAAATGTGCATCTCTTACTCTTGGTGACAGTTTGCTCGCGTACTCCAATATGGTCCACCAACATGAGAAGAGTTCTGGAAGTCCTGGGGAGGGTGTGAATCTCTCTGTGACTGACAAAGCAGTCGTGGATGCGTGTGGAATTGCTGAAGCCCTCGACGCAAACCAAGACTCTCCAGACATGGCCATGTGGCCAATTTCAAAGGTCGCTGTGCTTCTTCTTGATTCAACTAGGAAAAGATGTCTGCTGGAGAGTGGTTCTGTCGGTAAAAATGTTCGCTCCCTTTTGGAGAAAGAGATTGACAGTGAGATACCCAGAGTTAAAAATGCACTGCCTCCTGTTGTAGATGTGTCAACTATGAAGTTCGTGAGCTGTTCAGTTAATGTAAAAGAAACAGCAGCAGCAAATGCAGGATTTGTGGATATGGAAGCAGGTGTTAAAATGAACAGCAACAAAAGAAGAGAGAATCACTCTCTAGACTTAAATATTTCTCATGATATGGCTATGGAGAAGGCACTTGTAATAAAGAATACTGAGTTGGAATGGAGAAGTGCAGAAGTGTCAAAAAAGTCAGATTTTCATCAAGGTGGCGGTGCTAAGGACAACAAGGATCTGAAGTTTGCTTCCTTCAAGTCATATCTGAAAAAACGGGATGATCTTCATCGCAAGCAACGCATGATTGAAGATGAAACTGTTCAATTTGATATGGACATCCAGTCAGTCTTTGCTGGAGGG-GAGTGGACACCAGAAGCGATGTCACTACTAGAAAAATATGGAATTCTTGTCGATAGCTTAGATATGGT-GGAAGTTAATGGTTCATCCTATTCTGGAGATGGATATGAAACCTTAACCATTGAGAGGAAGAAATTGACAGTGGAAAGACTCCTCCGCAATAAATGCCAGGAGTTGGATGAGGTCTGCCGTGAGAATAATTGGATTCTTCCGAGATATAAAGTTATGCCATCACTAACAGATGGCATGTACGTGGCCAATGTAGATATTGCATGCCTGGAGTTCAGCCAAATGACATTTGGCGATCCAAAGACGAACCCTCGTGATGCACGGGAGTCTGCAGCTGCCAACCTGCTGGCTGAGCTTCTTAAGAAGGCCGATGCCAACAGGGAGCACACCTGACGCAAGATTACTGAAGTAAACACCTGAAAATTGGTAGACGGCAGGTAGCTGCAAAGCTGCAACTCAGCACTGAACTTTCTGAAAGACATCACCTTCATTTAGACATTTTACCTTACATTGGTTACTCTTGTCATTCAAACTGTAGCTGTTGCTTTTTTAATAATTCTTCGGTCGCAAATTATGTGACGCTGCAGGTGCAGTGTGAATTTTGTAGTCATTTTAAACAATAGATCTTGGTGAACATGTCTGTTTCTGCCTCAAAAAAAAAAAA]
[+] EMBL AB097944 [CGGCGGCGGTTTGGTTTCCCTCTTGTTTGTATTTTAATCCGTCGTGGGTGGGTGATGGAGGTGGAGCGTCGTGGTGGTGGGGAGGTGAACGGGGTGGTGGAGATGGAGGACGCGGTGGGGATACTGGTGGACTACCTGGTGCGGCCGGCGCTGCGGAAGGGGAGCAGGATGACGCCGGAGAACCAGGCCGACGTCGCGCGCCAGGTTCATATGGCAGTCATTCTGTATAACTATTACCACCGGAAGCAGTTCCCACAGCTTGCTTTTGCTGATGCAATGAGGTTCTTCAAATGTGCATCTCTTACTCTTGGTGACAGTTTGCTCGCGTACTCCAATATGGTCCACCAACATGAGAAGAGTTCTGGAAGTCCTGGGGAGGGTGTGAATCTCTCTGTGACTGACAAAGCAGTCGTGGATGCGTGTGGAATTGCTGAAGCCCTCGACGCAAACCAAGACTCTCCAGACATGGCCATGTGGCCAATTTCAAAGGTCGCTGTGCTTCTTCTTGATTCAACTAGGAAAAGATGTCTGCTGGAGAGTGGTTCTGTCGGTAAAAATGTTCGCTCCCTTTTGGAGAAAGAGATTGACAGTGAGATACCCAGAGTTAAAAATGCACTGCCTCCTGTTGTAGATGTGTCAACTATGAAGTTCGTGAGCTGTTCAGTTAATGTAAAAGAAACAGCAGCAGCAAATGCAGGATTTGTGGATATGGAAGCAGGTGTTAAAATGAACAGCAACAAAAGAAGAGAGAATCACTCTCTAGACTTAAATATTTCTCATGATATGGCTATGGAGAAGGCACTTGTAATAAAGAATACTGAGTTGGAATGGAGAAGTGCAGAAGTGTCAAAAAAGTCAGATTTTCATCAAGGTGGCGGTGCTAAGGACAACAAGGATCTGAAGTTTGCTTCCTTCAAGTCATATCTGAAAAAACGGGATGATCTTCATCGCAAGCAACGCATGATTGAAGATGAAACTGTTCAATTTGATATGGACATCCAGTCAGTCTTTGCTGGAGGG GAGTGGACACCAGAAGCGATGTCACTACTAGAAAAATATGGAATTCTTGTCGATAGCTTAGATATGGT GGAAGTTAATGGTTCATCCTATTCTGGAGATGGATATGAAACCTTAACCATTGAGAGGAAGAAATTGACAGTGGAAAGACTCCTCCGCAATAAATGCCAGGAGTTGGATGAGGTCTGCCGTGAGAATAATTGGATTCTTCCGAGATATAAAGTTATGCCATCACTAACAGATGGCATGTACGTGGCCAATGTAGATATTGCATGCCTGGAGTTCAGCCAAATGACATTTGGCGATCCAAAGACGAACCCTCGTGATGCACGGGAGTCTGCAGCTGCCAACCTGCTGGCTGAGCTTCTTAAGAAGGCCGATGCCAACAGGGAGCACACCTGACGCAAGATTACTGAAGTAAACACCTGAAAATTGGTAGACGGCAGGTAGCTGCAAAGCTGCAACTCAGCACTGAACTTTCTGAAAGACATCACCTTCATTTAGACATTTTACCTTACATTGGTTACTCTTGTCATTCAAACTGTAGCTGTTGCTTTTTTAATAATTCTTCGGTCGCAAATTATGTGACGCTGCAGGTGCAGTGTGAATTTTGTAGTCATTTTAAACAATAGATCTTGGTGAACATGTCTGTTTCTGCCTCAAAAAAAAAAAA]
[+] EMBL CF322510 [ TTAAAATGAACAGCAACAAAAGAAGAGAGAATCACTCTCTAGACTTAAATATTTCTCATGATATGGCTATGGAGAAGGCACTTGTAATAAAGAATACTGAGTTGGAATGGAGAAGTGCAGAAGTGTCAAAAAAGTCAGATTTTCATCAAGGTGGCGGTGCTAAGGACAACAAGGATCTGAAGTTTGCTTCCTTCAAGTCATATCTGAAAAAACGGGATGATCTTCATCGCAAGCAACGCATGATTGAAGATGAAACTGTTCAATTTGATATGGACATCCAGTCAGTCTTTGCTGGAGGGNGAGTGGACACCAGAAGCGATGTCACTACTAGAAAAATATGGAATTCTTGTCGATAGCTTAGATATGGTGGGAAGTTAATGGTTCATCCTATTCTGGAGATGGATATGAAACCTTAACCATTGAGAGGAAGAAATTGACAGTGGAAAGACTCCTCCGCAATAAAT ]
consensusID : consensus_6247#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 182 fasta sequence
[TACCTTACATTGGTTACTCTTGTCATTCAAACTGTAGCTGTTGCTTTTTTAATAATTCTTCGGTCGCAAATTATGTGACGCTGCAGGTGCAGTGTGAATTTTGTAGTCATTTTAAACAATAGATCTTGGTGAACATGTCTGTTTCTGCCTCATGGTTTTGCTGTAGGCTTTGTCCGCAAAAA]
[+] EMBL CF331394 [TACCTTACATTGGTTACTCTTGTCATTCAAACTGTAGCTGTTGCTTTTTTAATAATTCTTCGGTCGCAAATTATGTGACGCTGCAGGTGCAGTGTGAATTTTGTAGTCATTTTAAACAATAGATCTTGGTGAACATGTCTGTTTCTGCCTCATGGTTTTGCTGTAGGCTTTGTCCGCAAAA ]
[-] EMBL CF331393 [ ACCTTACATTGGTTACTCTTGTCATTCAAACTGTAGCTGTTGCTTTTTTAATAATTCTTCGGTCGCAAATTATGTGACGCTGCAGGTGCAGTGTGAATTTTGTAGTCATTTTAAACAATAGATCTTGGTGAACATGTCTGTTTCTGCCTCATGGTTTTGCTGTAGGCTTTGTCCGCAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6247#0 CGGCGGCGGTTTGGTTTCCCTCTTGTTTGTATTTTAATCCGTCGTGGGTGGGTGATGGAG 60
consensus_6247#1 ------------------------------------------------------------
consensus_6247#0 GTGGAGCGTCGTGGTGGTGGGGAGGTGAACGGGGTGGTGGAGATGGAGGACGCGGTGGGG 120
consensus_6247#1 ------------------------------------------------------------
consensus_6247#0 ATACTGGTGGACTACCTGGTGCGGCCGGCGCTGCGGAAGGGGAGCAGGATGACGCCGGAG 180
consensus_6247#1 ------------------------------------------------------------
consensus_6247#0 AACCAGGCCGACGTCGCGCGCCAGGTTCATATGGCAGTCATTCTGTATAACTATTACCAC 240
consensus_6247#1 ------------------------------------------------------------
consensus_6247#0 CGGAAGCAGTTCCCACAGCTTGCTTTTGCTGATGCAATGAGGTTCTTCAAATGTGCATCT 300
consensus_6247#1 ------------------------------------------------------------
consensus_6247#0 CTTACTCTTGGTGACAGTTTGCTCGCGTACTCCAATATGGTCCACCAACATGAGAAGAGT 360
consensus_6247#1 ------------------------------------------------------------
consensus_6247#0 TCTGGAAGTCCTGGGGAGGGTGTGAATCTCTCTGTGACTGACAAAGCAGTCGTGGATGCG 420
consensus_6247#1 ------------------------------------------------------------
consensus_6247#0 TGTGGAATTGCTGAAGCCCTCGACGCAAACCAAGACTCTCCAGACATGGCCATGTGGCCA 480
consensus_6247#1 ------------------------------------------------------------
consensus_6247#0 ATTTCAAAGGTCGCTGTGCTTCTTCTTGATTCAACTAGGAAAAGATGTCTGCTGGAGAGT 540
consensus_6247#1 ------------------------------------------------------------
consensus_6247#0 GGTTCTGTCGGTAAAAATGTTCGCTCCCTTTTGGAGAAAGAGATTGACAGTGAGATACCC 600
consensus_6247#1 ------------------------------------------------------------
consensus_6247#0 AGAGTTAAAAATGCACTGCCTCCTGTTGTAGATGTGTCAACTATGAAGTTCGTGAGCTGT 660
consensus_6247#1 ------------------------------------------------------------
consensus_6247#0 TCAGTTAATGTAAAAGAAACAGCAGCAGCAAATGCAGGATTTGTGGATATGGAAGCAGGT 720
consensus_6247#1 ------------------------------------------------------------
consensus_6247#0 GTTAAAATGAACAGCAACAAAAGAAGAGAGAATCACTCTCTAGACTTAAATATTTCTCAT 780
consensus_6247#1 ------------------------------------------------------------
consensus_6247#0 GATATGGCTATGGAGAAGGCACTTGTAATAAAGAATACTGAGTTGGAATGGAGAAGTGCA 840
consensus_6247#1 ------------------------------------------------------------
consensus_6247#0 GAAGTGTCAAAAAAGTCAGATTTTCATCAAGGTGGCGGTGCTAAGGACAACAAGGATCTG 900
consensus_6247#1 ------------------------------------------------------------
consensus_6247#0 AAGTTTGCTTCCTTCAAGTCATATCTGAAAAAACGGGATGATCTTCATCGCAAGCAACGC 960
consensus_6247#1 ------------------------------------------------------------
consensus_6247#0 ATGATTGAAGATGAAACTGTTCAATTTGATATGGACATCCAGTCAGTCTTTGCTGGAGGG 1020
consensus_6247#1 ------------------------------------------------------------
consensus_6247#0 GAGTGGACACCAGAAGCGATGTCACTACTAGAAAAATATGGAATTCTTGTCGATAGCTTA 1080
consensus_6247#1 ------------------------------------------------------------
consensus_6247#0 GATATGGTGGAAGTTAATGGTTCATCCTATTCTGGAGATGGATATGAAACCTTAACCATT 1140
consensus_6247#1 ------------------------------------------------------------
consensus_6247#0 GAGAGGAAGAAATTGACAGTGGAAAGACTCCTCCGCAATAAATGCCAGGAGTTGGATGAG 1200
consensus_6247#1 ------------------------------------------------------------
consensus_6247#0 GTCTGCCGTGAGAATAATTGGATTCTTCCGAGATATAAAGTTATGCCATCACTAACAGAT 1260
consensus_6247#1 ------------------------------------------------------------
consensus_6247#0 GGCATGTACGTGGCCAATGTAGATATTGCATGCCTGGAGTTCAGCCAAATGACATTTGGC 1320
consensus_6247#1 ------------------------------------------------------------
consensus_6247#0 GATCCAAAGACGAACCCTCGTGATGCACGGGAGTCTGCAGCTGCCAACCTGCTGGCTGAG 1380
consensus_6247#1 ------------------------------------------------------------
consensus_6247#0 CTTCTTAAGAAGGCCGATGCCAACAGGGAGCACACCTGACGCAAGATTACTGAAGTAAAC 1440
consensus_6247#1 ------------------------------------------------------------
consensus_6247#0 ACCTGAAAATTGGTAGACGGCAGGTAGCTGCAAAGCTGCAACTCAGCACTGAACTTTCTG 1500
consensus_6247#1 ------------------------------------------------------------
consensus_6247#0 AAAGACATCACCTTCATTTAGACATTTTACCTTACATTGGTTACTCTTGTCATTCAAACT 1560
consensus_6247#1 ---------------------------TACCTTACATTGGTTACTCTTGTCATTCAAACT 33
*********************************
consensus_6247#0 GTAGCTGTTGCTTTTTTAATAATTCTTCGGTCGCAAATTATGTGACGCTGCAGGTGCAGT 1620
consensus_6247#1 GTAGCTGTTGCTTTTTTAATAATTCTTCGGTCGCAAATTATGTGACGCTGCAGGTGCAGT 93
************************************************************
consensus_6247#0 GTGAATTTTGTAGTCATTTTAAACAATAGATCTTGGTGAACATGTCTGTTTCTGCCTCAA 1680
consensus_6247#1 GTGAATTTTGTAGTCATTTTAAACAATAGATCTTGGTGAACATGTCTGTTTCTGCCTCAT 153
***********************************************************
consensus_6247#0 AAAAAAAAAA------------------- 1690
consensus_6247#1 GGTTTTGCTGTAGGCTTTGTCCGCAAAAA 182
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||