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Oryza sativa
cluster # 6248 cluster # 6248       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6248#0 length = 1161 sequences # 4  

consensusID : consensus_6248#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1161
fasta sequence
                              [CTTCAGCCAATCGGCCATCGGCGGCGGCGGGCTGAAGAGGGCTGGAGCGGCGGCGGCGTTGGGCGGCGAGCGAGGGACGGAGCGGCGGCGGTGGCGGGCCGAGGAGGTCGTCCGCCGCCGGCGATGGAGGGGACGCCGCCCAAGCCACCGGCCGCCCGTCGCACGTCGCCGCTGAGCTCCCCCCTTTTCCACTGCCCCGAGATCCGCCTCCGCCACCGCAGCCCTCCTCGCTGAGGTCCGGAAGGCATCGAGGAAGCACTCTCCCCAAGTCCCCAGAAGAGGTGGATACGAACCTCTTGCGTAAGTTGTACTAGCTCATCCATCCCTCTCCACCCTTATAAGCACCACAAGTTCGTTGTTAATTTGGAGGGATTTGGTCTTATAATCAATCAAATCTGCCGCAGCGCGTCCGTACCACCGCCTCTACTTCCCTCCTCCGCTCACATCAACATGCTGATCCCCTCGGAGACCCAACACGGATTGGATCTCAATCCTCCACTTCCTGATGATGACAAACCACAGCTTATGGAGGTCGAGGTGGAGTTGCCAACAGCTCATTCTGTAAATCTATCTTCAAGTCCGAGCTCGAGATCAAATATGAGTTAGTCAGGACGATCACTAGCTGTGGAAATCTGGACGAAGGTTTTCATGGTCATGTAAATTTTATTGCAAAGGGCGATTGCAAGAACTCGGAGGAGTTAT-TTTTCGCGGAAGTACGCTGGGAAAACAATGGATATATACCCACTTGCATGGTCTCTCT-TGAA-GGGAAAGAAAAAATTGGTGGTTACTATGGCGCCAGAGTTCATTATCCAAGAGGTGTTCCAGGTCTTCCCATTGACAAACAACACTGCTATTTCTGTGGAGATGAGCTTAAGCATCCAGAAGATGGAACACTGTATGAGAGTGGCCATGTTGCTTCGAGTGATTATTATGAGTAGTATGCATTATCTATTATGTTTATTATTTTCAAGTTGAACTAAGTTAGTATTTGTGTTAGTTATCACACTTTTTCACCGTTGTAATGTTTATAAACCACGTTTATATTTGGGTTGAACTTCGAGTTGTATGCCATACAGCCGAGCAAAAGTTTGAGAGAATCATCGTTGTATGTCAGCAATTCGCTCTTGGGAGGAGCTATATTTGTTTAACCAGATCTTATCC]

[+] EMBL AK066785             [CTTCAGCCAATCGGCCATCGGCGGCGGCGGGCTGAAGAGGGCTGGAGCGGCGGCGGCGTTGGGCGGCGAGCGAGGGACGGAGCGGCGGCGGTGGCGGGCCGAGGAGGTCGTCCGCCGCCGGCGATGGAGGGGACGCCGCCCAAGCCACCGGCCGCCCGTCGCACGTCGCCGCTGAGCTCCCCCCTTTTCCACTGCCCCGAGATCCGCCTCCGCCACCGCAGCCCTCCTCGCTGAGGTCCGGAAGGCATCGAGGAAGCACTCTCCCCAAGTCCCCAGAAGAGGTGGATACGAACCTCTTGCGTAAGTTGTACTAGCTCATCCATCCCTCTCCACCCTTATAAGCACCACAAGTTCGTTGTTAATTTGGAGGGATTTGGTCTTATAATCAATCAAATCTGCCGCAGCGCGTCCGTACCACCGCCTCTACTTCCCTCCTCCGCTCACATCAACATGCTGATCCCCTCGGAGACCCAACACGGATTGGATCTCAATCCTCCACTTCCTGATGATGACAAACCACAGCTTATGGAGGTCGAGGTGGAGTTGCCAACAGCTCATTCTGTAAATCTATCTTCAAGTCCGAGCTCGAGATCAAATATGAGTTAGTCAGGACGATCACTAGCTGTGGAAATCTGGACGAAGGTTTTCATGGTCATGTAAATTTTATTGCAAAGGGCGATTGCAAGAACTCGGAGGAGTTAT TTTTCGCGGAAGTACGCTGGGAAAACAATGGATATATACCCACTTGCATGGTCTCTCT TGAA GGGAAAGAAAAAATTGGTGGTTACTATGGCGCCAGAGTTCATTATCCAAGAGGTGTTCCAGGTCTTCCCATTGACAAACAACACTGCTATTTCTGTGGAGATGAGCTTAAGCATCCAGAAGATGGAACACTGTATGAGAGTGGCCATGTTGCTTCGAGTGATTATTATGAGTAGTATGCATTATCTATTATGTTTATTATTTTCAAGTTGAACTAAGTTAGTATTTGTGTTAGTTATCACACTTTTTCACCGTTGTAATGTTTATAAACCACGTTTATATTTGGGTTGAACTTCGAGTTGTATGCCATACAGCCGAGCAAAAGTTTGAGAGAATCATCGTTGTATGTCAGCAATTCGCTCTTGGGAGGAGCTATATTTGTTTAACCAGATCTTATCC]
[+] EMBL OSS10939A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CCACAGCTTATGGAGGTCGAGGTGGAGTTGCCAACAGCTCATTCTGTAAATCTATCTTCAAGTCCGAGCTCGAGATCAAATATGAGTTAGTCAGGACGATCACTAGCTGTGGAAATCTGGACGAAGGTTTTCATGGTCATGTAAATTTTATTGCAAAGGGCGATTGCAAGAACTCGGAGGAGTTAT TTTTCGCGGAAGTACGCTGGGAAAACAATGGATATATACCCACTTGCATGGTCTCTCT TGAA GGGAAAGAAAAAATTGGTGGTTACTATGGCGCCAGAGTTCATTATCCAAGAGGTGTTCCAGGTCTTCCCATTGACAAACAACACTGCTATTTCTGTGGAGATGAGCTTAAGCATCCAGAAGATGGAACACTGTATGAGAGTGGCCA                                                                                                                                                                                                                                                           ]
[+] EMBL AU086000             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CACAGCTTATGGAGGTCGAGGTGGAGTTGCCAACAGCTCATTCTGTAAATCTATCTTCAAGTCCGAGCTCGAGATCAAATATGAGTTAGTCAGGACGATCACTAGCTGTGGAAATCTGGACGAAGGTTTTCATGGTCATGTAAATTTTATTGCAAAGGGCGATTGCAAGAACTCGGAGGAGTTAT TTTTCGCGGAAGTACGCTGGGAAAACAATGGATATATACCCACTTGCATGGTCTCTCT TGAA GGGAAAGAAAAAATTGGTGGTTACTATGGCGCCAGAGTTCATTATCCAAGAGGTGTTCCAGGTCTTCCCATTGACAAACAACACTGCTATTTCTGTGGAGATGAGCTTAAGCATCCAGAAGATGGAACACTGTATGAGAGTGGCCATGTTGCTTCGAGTGATTATTATGAGTAGTATGCATTATCTATTATGTTTATTATTTTCAAGTTGAACTAAGTTAGTATTTGTGTTAGTTATCACACTTTTTCACCGTTGTAATGTTTATAAACCACGTTTATATTTGGGTTGAACTTCGAGTTGTATGCCATACAGCCGAGCAAAAGTTTGAGAGAAaaa                                                             ]
[-] EMBL BU667262             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TGCAAGAACTCGGAGGAGTTATGTTTTCGCGGAAGTACGCTGGGAAAACAATGGATATATACCCACTTGCATGGTCTCTCTGTGAATGGGAAAGAAAAAATTGGTGGTTACTATGGCGCCAGAGTTCATTATCCAAGAGGTGTTCCA                                                                                                                                                                                                                                                                                                                                                 ]


>consensus_6248#0 CTTCAGCCAATCGGCCATCGGCGGCGGCGGGCTGAAGAGGGCTGGAGCGGCGGCGGCGTT GGGCGGCGAGCGAGGGACGGAGCGGCGGCGGTGGCGGGCCGAGGAGGTCGTCCGCCGCCG GCGATGGAGGGGACGCCGCCCAAGCCACCGGCCGCCCGTCGCACGTCGCCGCTGAGCTCC CCCCTTTTCCACTGCCCCGAGATCCGCCTCCGCCACCGCAGCCCTCCTCGCTGAGGTCCG GAAGGCATCGAGGAAGCACTCTCCCCAAGTCCCCAGAAGAGGTGGATACGAACCTCTTGC GTAAGTTGTACTAGCTCATCCATCCCTCTCCACCCTTATAAGCACCACAAGTTCGTTGTT AATTTGGAGGGATTTGGTCTTATAATCAATCAAATCTGCCGCAGCGCGTCCGTACCACCG CCTCTACTTCCCTCCTCCGCTCACATCAACATGCTGATCCCCTCGGAGACCCAACACGGA TTGGATCTCAATCCTCCACTTCCTGATGATGACAAACCACAGCTTATGGAGGTCGAGGTG GAGTTGCCAACAGCTCATTCTGTAAATCTATCTTCAAGTCCGAGCTCGAGATCAAATATG AGTTAGTCAGGACGATCACTAGCTGTGGAAATCTGGACGAAGGTTTTCATGGTCATGTAA ATTTTATTGCAAAGGGCGATTGCAAGAACTCGGAGGAGTTATTTTTCGCGGAAGTACGCT GGGAAAACAATGGATATATACCCACTTGCATGGTCTCTCTTGAAGGGAAAGAAAAAATTG GTGGTTACTATGGCGCCAGAGTTCATTATCCAAGAGGTGTTCCAGGTCTTCCCATTGACA AACAACACTGCTATTTCTGTGGAGATGAGCTTAAGCATCCAGAAGATGGAACACTGTATG AGAGTGGCCATGTTGCTTCGAGTGATTATTATGAGTAGTATGCATTATCTATTATGTTTA TTATTTTCAAGTTGAACTAAGTTAGTATTTGTGTTAGTTATCACACTTTTTCACCGTTGT AATGTTTATAAACCACGTTTATATTTGGGTTGAACTTCGAGTTGTATGCCATACAGCCGA GCAAAAGTTTGAGAGAATCATCGTTGTATGTCAGCAATTCGCTCTTGGGAGGAGCTATAT TTGTTTAACCAGATCTTATCC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)