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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6255#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 988 fasta sequence
[GCTCACGCTGNGGNTGCGGTCTAGACTAGTGGATCTCCCGGCTGCNGGAATTCGGCACGAGGGACAGAATAGTTGCAGCGAACAAGACATAAAAATGGCGTTAGAGAAAGCCTATANATCTCGCTTCTTCCTCNCCTGTCTTCATCTTCAGTAAAACATATTGTGGATTCTGCGATAGGGTCAAACCAGCTGTTCAAGCAGCCTGGTGCATCATACCATGCTATTGAACTGTACAAGGAACATGATGGAGATGCTATTCAAGCTGCTCTTCATGAGTGGACAGGACAGAGGACTGTACCAAATGTCTTTATAGGATGAAAGCACATGGTGGCTGTGATGCTGTGACAGCAAAGCACTCAGCAAGGGCAGCTTGTGCCACTGCTCACTGAAGCCATAGCTATAAATCTCGAGATATAAGTATCTGCTTGAGCTCTCAGTCGAAAGGAATGGGATACTCTGCGGTGTGAGTTCTACCTCGTGATTGGCTCGTTTTGAGATACGAAGATGTATGTTTATACTCGGCTGATGTACTAAGACTGTTGGAAGTANACACCTTAAATAAAATGTTTGTTGAAGTTATACATATCACTGATATGCAATAGATACTGTAATGGTTGCTTCTCAACAATCACTATAATCACTTATTAACAAATATTCCTCTTGGGGTGCCGGACCATATTCTCTTANGGAGTTGTTACGCGCGCACGTGCCTCTGTATACTACTACTGTGTGGGAAACTCTGTGGTACCTAATANATCTCTATGAGTCTATCTCCCTTTGCTAGTCTGTCGGAGTANGAGAAGTCACTATCGTNCAGTCTCTCAAANCTACGCCATCATGATTGAGTACTGGACCTCACTTGTNCTTGCCTACTACTACGCGTCGGTCGTGTGTGTNACGCTGTGNTACATGCTCACACGANACGCTCTAACACTCTAATCTTCTCATATCACTCTTTTCTAGCNCAGTGCTGGTCTTCACGATTACT]
[+] EMBL BE040256 [GCTCACGCTGNGGNTGCGGTCTAGACTAGTGGATCTCCCGGCTGCNGGAATTCGGCACGAGGGACAGAATAGTTGCAGCGAACAAGACATAAAAATGGCGTTAGAGAAAGCCTATANATCTCGCTTCTTCCTCNCCTGTCTTCATCTTCAGTAAAACATATTGTGGATTCTGCGATAGGGTCAAACCAGCTGTTCAAGCAGCCTGGTGCATCATACCATGCTATTGAACTGTACAAGGAACATGATGGAGATGCTATTCAAGCTGCTCTTCATGAGTGGACAGGACAGAGGACTGTACCAAATGTCTTTATAGGATGAAAGCACATGGTGGCTGTGATGCTGTGACAGCAAAGCACTCAGCAAGGGCAGCTTGTGCCACTGCTCACTGAAGCCATAGCTATAAATCTCGAGATATAAGTATCTGCTTGAGCTCTCAGTCGAAAGGAATGGGATACTCTGCGGTGTGAGTTCTACCTCGTGATTGGCTCGTTTTGAGATACGAAGATGTATGTTTATACTCGGCTGATGTACTAAGACTGTTGGAAGTANACACCTTAAATAAAATGTTTGTTGAAGTTATACATATCACTGATATGCAATAGATACTGTAATGGTTGCTTCTCAACAATCACTATAATCACTTATTAACAAATATTCCTCTTGGGGTGCCGGACCATATTCTCTTANGGAGTTGTTACGCGCGCACGTGCCTCTGTATACTACTACTGTGTGGGAAACTCTGTGGTACCTAATANATCTCTATGAGTCTATCTCCCTTTGCTAGTCTGTCGGAGTANGAGAAGTCACTATCGTNCAGTCTCTCAAANCTACGCCATCATGATTGAGTACTGGACCTCACTTGTNCTTGCCTACTACTACGCGTCGGTCGTGTGTGTNACGCTGTGNTACATGCTCACACGANACGCTCTAACACTCTAATCTTCTCATATCACTCTTTTCTAGCNCAGTGCTGGTCTTCACGATTACT]
consensusID : consensus_6255#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence
[AGTTGCAAGGAAGACAACATATGACTGGCGGTAGAGAAAGCCGGGCACCTCGCTACTTCCTACCCTGCCTTCATCTTCAGTAGAACACTATTGTGGATGATGGGATAGGGGCTGACAGCTCCTCTAGCAGCCTGGCGCATCATACCAGGGCATTGAACTGGACCCGGAACAGGAAGGAGACGCTATCCGAGCTGGTCTTCAAGAGTGTACAGGACAGAGGACTGCACCAACTAGTCATTCTTAGGATGAAAGCACATTGATGGCTGAGATGCTGAGACAGCAGAGCACCAGCTGGGGACAGCTTGCGCCACTGATCACTGAAGCCAAAGCTATAAACTCGGAGAAACAAGTATCTGCTTGAGCTCTCAATCGAGAGGAAAGGGAACTTTGGGGCTTGAGGTCTACCTCGAGAATTGATTGACTCGAATATTAGGACGATGTTATGCTTTCATACTAGGGCTGATGCTACTAAGGACTGATATGGAAGTTCAAACGCCTTATAACATCATGAGCTGTATGAGAGCTATAACAACAACAACTGCATAATGGAGATAGATCACTGATAACGGTTCGTATTGCATTTCCTTCTATTTACTTGAAAGACAAGGGAAAGTTGAGATGCTCGTGGGGGATCCCGGCT]
[+] EMBL CA757481 [AGTTGCAAGGAAGACAACATATGACTGGCGGTAGAGAAAGCCGGGCACCTCGCTACTTCCTACCCTGCCTTCATCTTCAGTAGAACACTATTGTGGATGATGGGATAGGGGCTGACAGCTCCTCTAGCAGCCTGGCGCATCATACCAGGGCATTGAACTGGACCCGGAACAGGAAGGAGACGCTATCCGAGCTGGTCTTCAAGAGTGTACAGGACAGAGGACTGCACCAACTAGTCATTCTTAGGATGAAAGCACATTGATGGCTGAGATGCTGAGACAGCAGAGCACCAGCTGGGGACAGCTTGCGCCACTGATCACTGAAGCCAAAGCTATAAACTCGGAGAAACAAGTATCTGCTTGAGCTCTCAATCGAGAGGAAAGGGAACTTTGGGGCTTGAGGTCTACCTCGAGAATTGATTGACTCGAATATTAGGACGATGTTATGCTTTCATACTAGGGCTGATGCTACTAAGGACTGATATGGAAGTTCAAACGCCTTATAACATCATGAGCTGTATGAGAGCTATAACAACAACAACTGCATAATGGAGATAGATCACTGATAACGGTTCGTATTGCATTTCCTTCTATTTACTTGAAAGACAAGGGAAAGTTGAGATGCTCGTGGGGGATCCCGGCT]
consensusID : consensus_6255#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence
[AGTTGCAGCGAACAAGACATAAAAATGGCGTTAGAGAAAGCCAAGCACCTCGCTTCTTCCTCCCCTGTCTTCATCTTCAGTAAAACATATTGTGGATTCTGCGATAGGGTCAAACAGCTGTTCAAGCAGCTTGGTGCATCATACCAGGCTATTGAACTGGACAAGGAACAGGATGGAGATGCTATCCAAGCTGCTCTTCATGAGTGGACAGGACAGAGGACTGTACCAAATGTCTTCATAGGAGGAAAGCACATTGGTGGCTGTGATGCTGTGACAGCAAAGCACCAGCAAGGGCAGCTTGTGCCACTGCTCACTGAAGCCAAAGCTATAAACTCGGAGAAATAAGTAACTGCTTGAGCTCTCAGTCGAAAGGAAGGGGAACTTTGGGGTTTGAGTTCTACCTCGAGATTTGGTTGTCTCGGAGATGAGGAAGATGTTATGCTTTCAAACTTGGTCTGATGTTACTAAGTACTGTTTGGAAGTTCAAACACCTTAGAATAAAAATGGTTTGTATGAAAGTTTATAACATCAACAACTGCATAATGCANATAGATTACTGTAAATGGTTTGTATTANAATAACTTCTATNTACTTGNAAAACAANGGA]
[+] EMBL CA757474 [AGTTGCAGCGAACAAGACATAAAAATGGCGTTAGAGAAAGCCAAGCACCTCGCTTCTTCCTCCCCTGTCTTCATCTTCAGTAAAACATATTGTGGATTCTGCGATAGGGTCAAACAGCTGTTCAAGCAGCTTGGTGCATCATACCAGGCTATTGAACTGGACAAGGAACAGGATGGAGATGCTATCCAAGCTGCTCTTCATGAGTGGACAGGACAGAGGACTGTACCAAATGTCTTCATAGGAGGAAAGCACATTGGTGGCTGTGATGCTGTGACAGCAAAGCACCAGCAAGGGCAGCTTGTGCCACTGCTCACTGAAGCCAAAGCTATAAACTCGGAGAAATAAGTAACTGCTTGAGCTCTCAGTCGAAAGGAAGGGGAACTTTGGGGTTTGAGTTCTACCTCGAGATTTGGTTGTCTCGGAGATGAGGAAGATGTTATGCTTTCAAACTTGGTCTGATGTTACTAAGTACTGTTTGGAAGTTCAAACACCTTAGAATAAAAATGGTTTGTATGAAAGTTTATAACATCAACAACTGCATAATGCANATAGATTACTGTAAATGGTTTGTATTANAATAACTTCTATNTACTTGNAAAACAANGGA]
consensusID : consensus_6255#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 496 fasta sequence
[ACAGAATAGCAGCAGCGAACAATACATAATAATGGCGTTAGAGAAAGCCAGGCACCTCGCTTCTTCCTCCCCTGTCTTCATCTTCAGTAAAACATATTGTGGATTCTGCGATAGGGTCAAACAGCTGTTCAAGCAGCTTGGTGCATCATACCACCGCTCTTGAACATGGACAAGGAACAGGATGGAGATGCTATCCAAGCTGCTCTTTATGAGTGGACAGGACAGAGGACTCGCCCAAATGTCTTCATAGGATGAAAGCACATTGGCGGCTGTGATGCTGTGACAGCAAAGCACCACTCAGGGCAGCTTGTGCCACTGCTCACTGAAGCCTAACCTATAACTCGGAGAAATAAGTAACTGCTTGAGCTCTCATCCTAAGGGAGGGGAACCTTCGCGTCTGAGTCTACCTTCGGACTTGTTGTCCTCGATATGAGGAAGATGTTATTCTTCCAAACCAGAGCTTGCGCTTCTACATTCTTTACGGAAGTCAAACCCC]
[+] EMBL BE040272 [ACAGAATAGCAGCAGCGAACAATACATAATAATGGCGTTAGAGAAAGCCAGGCACCTCGCTTCTTCCTCCCCTGTCTTCATCTTCAGTAAAACATATTGTGGATTCTGCGATAGGGTCAAACAGCTGTTCAAGCAGCTTGGTGCATCATACCACCGCTCTTGAACATGGACAAGGAACAGGATGGAGATGCTATCCAAGCTGCTCTTTATGAGTGGACAGGACAGAGGACTCGCCCAAATGTCTTCATAGGATGAAAGCACATTGGCGGCTGTGATGCTGTGACAGCAAAGCACCACTCAGGGCAGCTTGTGCCACTGCTCACTGAAGCCTAACCTATAACTCGGAGAAATAAGTAACTGCTTGAGCTCTCATCCTAAGGGAGGGGAACCTTCGCGTCTGAGTCTACCTTCGGACTTGTTGTCCTCGATATGAGGAAGATGTTATTCTTCCAAACCAGAGCTTGCGCTTCTACATTCTTTACGGAAGTCAAACCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6255#1 ------------------------------------------------------------
consensus_6255#3 ------------------------------------------------------------
consensus_6255#0 GCTCACGCTGNGGNTGCGGTCTAGACTAGTGGATCTCCCGGCTGCNGGAATTCGGCACGA 60
consensus_6255#2 ------------------------------------------------------------
consensus_6255#1 ----------AGTTGCAAGGAAGACAACATATGACTGGCGGTAGAGAAAGCC-GGGCACC 49
consensus_6255#3 ---ACAGAATAGCAGCAGCGAACAATACATAATAATGGCGTTAGAGAAAGCC-AGGCACC 56
consensus_6255#0 GGGACAGAATAGTTGCAGCGAACAAGACATAAAAATGGCGTTAGAGAAAGCCTATANATC 120
consensus_6255#2 ----------AGTTGCAGCGAACAAGACATAAAAATGGCGTTAGAGAAAGCC-AAGCACC 49
** *** *** * ***** * ***** *********** * *
consensus_6255#1 TCGCTACTTCCTACCCTGCCTTCATCTTCAGTAGAACACTATTGTGGATGATGGGATAGG 109
consensus_6255#3 TCGCTTCTTCCTCCCCTGTCTTCATCTTCAGTAAAACA-TATTGTGGATTCTGCGATAGG 115
consensus_6255#0 TCGCTTCTTCCTCNCCTGTCTTCATCTTCAGTAAAACA-TATTGTGGATTCTGCGATAGG 179
consensus_6255#2 TCGCTTCTTCCTCCCCTGTCTTCATCTTCAGTAAAACA-TATTGTGGATTCTGCGATAGG 108
***** ****** **** ************** **** ********** ** ******
consensus_6255#1 GGCTGAC-AGCTCCTCTAGCAGCCTGGCGCATCATACCAGGGCA-TTGAAC-TGGACCCG 166
consensus_6255#3 GTCAAAC-AGCTGTTCAAGCAGCTTGGTGCATCATACCACCGCTCTTGAACATGGACAAG 174
consensus_6255#0 GTCAAACCAGCTGTTCAAGCAGCCTGGTGCATCATACCATGCTA-TTGAAC-TGTACAAG 237
consensus_6255#2 GTCAAAC-AGCTGTTCAAGCAGCTTGGTGCATCATACCAGGCTA-TTGAAC-TGGACAAG 165
* * ** **** ** ****** *** *********** ****** ** ** *
consensus_6255#1 GAACAGGAAGGAGACGCTATCCGAGCTGGTCTTCAAGAGTGTACAGGACAGAGGACTGCA 226
consensus_6255#3 GAACAGGATGGAGATGCTATCCAAGCTGCTCTTTATGAGTGGACAGGACAGAGGACTCGC 234
consensus_6255#0 GAACATGATGGAGATGCTATTCAAGCTGCTCTTCATGAGTGGACAGGACAGAGGACTGTA 297
consensus_6255#2 GAACAGGATGGAGATGCTATCCAAGCTGCTCTTCATGAGTGGACAGGACAGAGGACTGTA 225
***** ** ***** ***** * ***** **** * ***** ***************
consensus_6255#1 CCAACTAGTCATTCTTAGGATGAAAGCACATTGATGGCTGAGATGCTGAGACAGCAGAGC 286
consensus_6255#3 CCAAAT-GTC-TTCATAGGATGAAAGCACATTGGCGGCTGTGATGCTGTGACAGCAAAGC 292
consensus_6255#0 CCAAAT-GTC-TTTATAGGATGAAAGCACAT-GGTGGCTGTGATGCTGTGACAGCAAAGC 354
consensus_6255#2 CCAAAT-GTC-TTCATAGGAGGAAAGCACATTGGTGGCTGTGATGCTGTGACAGCAAAGC 283
**** * *** ** ***** ********** * ***** ******* ******* ***
consensus_6255#1 ACCAGCTGGGGACAGCTTGCGCCACTGATCACTGAAGCCAAAGCTATAAACTCGGAGAAA 346
consensus_6255#3 ACCA-CTCAGGGCAGCTTGTGCCACTGCTCACTGAAGCCTAACCTATAA-CTCGGAGAAA 350
consensus_6255#0 ACTCAGCAAGGGCAGCTTGTGCCACTGCTCACTGAAGCCATAGCTATAAATCTCGAGATA 414
consensus_6255#2 AC-CAGCAAGGGCAGCTTGTGCCACTGCTCACTGAAGCCAAAGCTATAAACTCGGAGAAA 342
** ** ******* ******* *********** * ****** **** *
consensus_6255#1 CAAGTATCTGCTTGAGCTCTCAATCGAGAGGAAAGGGA-ACTTTGGGGCTTGAGGTCTAC 405
consensus_6255#3 TAAGTAACTGCTTGAGCTCTCATCCTA-AGGGAGGGGA-ACCTTCGCGTCTGAG-TCTAC 407
consensus_6255#0 TAAGTATCTGCTTGAGCTCTCAGTCGAAAGGAATGGGATACTCTGCGGTGTGAGTTCTAC 474
consensus_6255#2 TAAGTAACTGCTTGAGCTCTCAGTCGAAAGGAAGGGGA-ACTTTGGGGTTTGAGTTCTAC 401
***** *************** * * *** * **** ** * * **** *****
consensus_6255#1 CTCGAGAATTGATTGACTCGAATATTAGGACGATGTTATGCTTTCATACTAGGGCTGATG 465
consensus_6255#3 CTTCGGACTTG-TTGTCCTCGATATGAGGAAGATGTTATTCTTCCAAACCAGAGCTTGCG 466
consensus_6255#0 CTCGTGATTGGCTCGTTTTG-AGAT-ACGAAGATGT-ATGTTT--ATACTCGG-CTGATG 528
consensus_6255#2 CTCGAGATTTGGTTGTCTCGGAGATGAGGAAGATGTTATGCTTTCAAACTTGGTCTGATG 461
** ** * * * * * ** * ** ***** ** ** * ** * ** *
consensus_6255#1 CTACTAAGGACTGATATGGAAGTTCAAACGCCTTATA-ACATCATGAGCTG----TATG- 519
consensus_6255#3 CTTCTACATTCTT-TACGGAAGT-CAAACCCC---------------------------- 496
consensus_6255#0 T-ACTAAG-ACTG-TT-GGAAGT--ANACACCTTAAATAAAATGTTTGTTGAAGTTATAC 582
consensus_6255#2 TTACTAAGTACTG-TTTGGAAGTTCAAACACCTTAGAATAAAAATGGTTTG----TATGA 516
*** ** * ****** * ** **
consensus_6255#1 AGAGCTATAACAA-CAACAACTGC-ATAATGGA-------GATAGATCACTGATAACGGT 570
consensus_6255#3 ------------------------------------------------------------
consensus_6255#0 ATATCACTGATATGCAATAGATACTGTAATGGTTGCTTCTCAACAATCACTATAATCACT 642
consensus_6255#2 AAGTTTATAACAT-CAACAACTGC-ATAATG-------CANATAGATTACTGTAAATGGT 567
consensus_6255#1 TCGTATTGCATTTCCTTCTATTTACTTGAAAGACAAGGGAAAGTTGAGATGCTCGTGGGG 630
consensus_6255#3 ------------------------------------------------------------
consensus_6255#0 TATTA--ACAAATATTCCTCTTGGGGTGCCGGACCATATTCTCTTANGGAGTTGTTACGC 700
consensus_6255#2 TTGTATTANAATAACTTCTATNTACTTGNAAAACAANGGA-------------------- 607
consensus_6255#1 GATCCCGGCT-------------------------------------------------- 640
consensus_6255#3 ------------------------------------------------------------
consensus_6255#0 GCGCACGTGCCTCTGTATACTACTACTGTGTGGGAAACTCTGTGGTACCTAATANATCTC 760
consensus_6255#2 ------------------------------------------------------------
consensus_6255#1 ------------------------------------------------------------
consensus_6255#3 ------------------------------------------------------------
consensus_6255#0 TATGAGTCTATCTCCCTTTGCTAGTCTGTCGGAGTANGAGAAGTCACTATCGTNCAGTCT 820
consensus_6255#2 ------------------------------------------------------------
consensus_6255#1 ------------------------------------------------------------
consensus_6255#3 ------------------------------------------------------------
consensus_6255#0 CTCAAANCTACGCCATCATGATTGAGTACTGGACCTCACTTGTNCTTGCCTACTACTACG 880
consensus_6255#2 ------------------------------------------------------------
consensus_6255#1 ------------------------------------------------------------
consensus_6255#3 ------------------------------------------------------------
consensus_6255#0 CGTCGGTCGTGTGTGTNACGCTGTGNTACATGCTCACACGANACGCTCTAACACTCTAAT 940
consensus_6255#2 ------------------------------------------------------------
consensus_6255#1 ------------------------------------------------
consensus_6255#3 ------------------------------------------------
consensus_6255#0 CTTCTCATATCACTCTTTTCTAGCNCAGTGCTGGTCTTCACGATTACT 988
consensus_6255#2 ------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||