These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6255#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 988 fasta sequence [GCTCACGCTGNGGNTGCGGTCTAGACTAGTGGATCTCCCGGCTGCNGGAATTCGGCACGAGGGACAGAATAGTTGCAGCGAACAAGACATAAAAATGGCGTTAGAGAAAGCCTATANATCTCGCTTCTTCCTCNCCTGTCTTCATCTTCAGTAAAACATATTGTGGATTCTGCGATAGGGTCAAACCAGCTGTTCAAGCAGCCTGGTGCATCATACCATGCTATTGAACTGTACAAGGAACATGATGGAGATGCTATTCAAGCTGCTCTTCATGAGTGGACAGGACAGAGGACTGTACCAAATGTCTTTATAGGATGAAAGCACATGGTGGCTGTGATGCTGTGACAGCAAAGCACTCAGCAAGGGCAGCTTGTGCCACTGCTCACTGAAGCCATAGCTATAAATCTCGAGATATAAGTATCTGCTTGAGCTCTCAGTCGAAAGGAATGGGATACTCTGCGGTGTGAGTTCTACCTCGTGATTGGCTCGTTTTGAGATACGAAGATGTATGTTTATACTCGGCTGATGTACTAAGACTGTTGGAAGTANACACCTTAAATAAAATGTTTGTTGAAGTTATACATATCACTGATATGCAATAGATACTGTAATGGTTGCTTCTCAACAATCACTATAATCACTTATTAACAAATATTCCTCTTGGGGTGCCGGACCATATTCTCTTANGGAGTTGTTACGCGCGCACGTGCCTCTGTATACTACTACTGTGTGGGAAACTCTGTGGTACCTAATANATCTCTATGAGTCTATCTCCCTTTGCTAGTCTGTCGGAGTANGAGAAGTCACTATCGTNCAGTCTCTCAAANCTACGCCATCATGATTGAGTACTGGACCTCACTTGTNCTTGCCTACTACTACGCGTCGGTCGTGTGTGTNACGCTGTGNTACATGCTCACACGANACGCTCTAACACTCTAATCTTCTCATATCACTCTTTTCTAGCNCAGTGCTGGTCTTCACGATTACT] [+] EMBL BE040256 [GCTCACGCTGNGGNTGCGGTCTAGACTAGTGGATCTCCCGGCTGCNGGAATTCGGCACGAGGGACAGAATAGTTGCAGCGAACAAGACATAAAAATGGCGTTAGAGAAAGCCTATANATCTCGCTTCTTCCTCNCCTGTCTTCATCTTCAGTAAAACATATTGTGGATTCTGCGATAGGGTCAAACCAGCTGTTCAAGCAGCCTGGTGCATCATACCATGCTATTGAACTGTACAAGGAACATGATGGAGATGCTATTCAAGCTGCTCTTCATGAGTGGACAGGACAGAGGACTGTACCAAATGTCTTTATAGGATGAAAGCACATGGTGGCTGTGATGCTGTGACAGCAAAGCACTCAGCAAGGGCAGCTTGTGCCACTGCTCACTGAAGCCATAGCTATAAATCTCGAGATATAAGTATCTGCTTGAGCTCTCAGTCGAAAGGAATGGGATACTCTGCGGTGTGAGTTCTACCTCGTGATTGGCTCGTTTTGAGATACGAAGATGTATGTTTATACTCGGCTGATGTACTAAGACTGTTGGAAGTANACACCTTAAATAAAATGTTTGTTGAAGTTATACATATCACTGATATGCAATAGATACTGTAATGGTTGCTTCTCAACAATCACTATAATCACTTATTAACAAATATTCCTCTTGGGGTGCCGGACCATATTCTCTTANGGAGTTGTTACGCGCGCACGTGCCTCTGTATACTACTACTGTGTGGGAAACTCTGTGGTACCTAATANATCTCTATGAGTCTATCTCCCTTTGCTAGTCTGTCGGAGTANGAGAAGTCACTATCGTNCAGTCTCTCAAANCTACGCCATCATGATTGAGTACTGGACCTCACTTGTNCTTGCCTACTACTACGCGTCGGTCGTGTGTGTNACGCTGTGNTACATGCTCACACGANACGCTCTAACACTCTAATCTTCTCATATCACTCTTTTCTAGCNCAGTGCTGGTCTTCACGATTACT] consensusID : consensus_6255#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence [AGTTGCAAGGAAGACAACATATGACTGGCGGTAGAGAAAGCCGGGCACCTCGCTACTTCCTACCCTGCCTTCATCTTCAGTAGAACACTATTGTGGATGATGGGATAGGGGCTGACAGCTCCTCTAGCAGCCTGGCGCATCATACCAGGGCATTGAACTGGACCCGGAACAGGAAGGAGACGCTATCCGAGCTGGTCTTCAAGAGTGTACAGGACAGAGGACTGCACCAACTAGTCATTCTTAGGATGAAAGCACATTGATGGCTGAGATGCTGAGACAGCAGAGCACCAGCTGGGGACAGCTTGCGCCACTGATCACTGAAGCCAAAGCTATAAACTCGGAGAAACAAGTATCTGCTTGAGCTCTCAATCGAGAGGAAAGGGAACTTTGGGGCTTGAGGTCTACCTCGAGAATTGATTGACTCGAATATTAGGACGATGTTATGCTTTCATACTAGGGCTGATGCTACTAAGGACTGATATGGAAGTTCAAACGCCTTATAACATCATGAGCTGTATGAGAGCTATAACAACAACAACTGCATAATGGAGATAGATCACTGATAACGGTTCGTATTGCATTTCCTTCTATTTACTTGAAAGACAAGGGAAAGTTGAGATGCTCGTGGGGGATCCCGGCT] [+] EMBL CA757481 [AGTTGCAAGGAAGACAACATATGACTGGCGGTAGAGAAAGCCGGGCACCTCGCTACTTCCTACCCTGCCTTCATCTTCAGTAGAACACTATTGTGGATGATGGGATAGGGGCTGACAGCTCCTCTAGCAGCCTGGCGCATCATACCAGGGCATTGAACTGGACCCGGAACAGGAAGGAGACGCTATCCGAGCTGGTCTTCAAGAGTGTACAGGACAGAGGACTGCACCAACTAGTCATTCTTAGGATGAAAGCACATTGATGGCTGAGATGCTGAGACAGCAGAGCACCAGCTGGGGACAGCTTGCGCCACTGATCACTGAAGCCAAAGCTATAAACTCGGAGAAACAAGTATCTGCTTGAGCTCTCAATCGAGAGGAAAGGGAACTTTGGGGCTTGAGGTCTACCTCGAGAATTGATTGACTCGAATATTAGGACGATGTTATGCTTTCATACTAGGGCTGATGCTACTAAGGACTGATATGGAAGTTCAAACGCCTTATAACATCATGAGCTGTATGAGAGCTATAACAACAACAACTGCATAATGGAGATAGATCACTGATAACGGTTCGTATTGCATTTCCTTCTATTTACTTGAAAGACAAGGGAAAGTTGAGATGCTCGTGGGGGATCCCGGCT] consensusID : consensus_6255#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence [AGTTGCAGCGAACAAGACATAAAAATGGCGTTAGAGAAAGCCAAGCACCTCGCTTCTTCCTCCCCTGTCTTCATCTTCAGTAAAACATATTGTGGATTCTGCGATAGGGTCAAACAGCTGTTCAAGCAGCTTGGTGCATCATACCAGGCTATTGAACTGGACAAGGAACAGGATGGAGATGCTATCCAAGCTGCTCTTCATGAGTGGACAGGACAGAGGACTGTACCAAATGTCTTCATAGGAGGAAAGCACATTGGTGGCTGTGATGCTGTGACAGCAAAGCACCAGCAAGGGCAGCTTGTGCCACTGCTCACTGAAGCCAAAGCTATAAACTCGGAGAAATAAGTAACTGCTTGAGCTCTCAGTCGAAAGGAAGGGGAACTTTGGGGTTTGAGTTCTACCTCGAGATTTGGTTGTCTCGGAGATGAGGAAGATGTTATGCTTTCAAACTTGGTCTGATGTTACTAAGTACTGTTTGGAAGTTCAAACACCTTAGAATAAAAATGGTTTGTATGAAAGTTTATAACATCAACAACTGCATAATGCANATAGATTACTGTAAATGGTTTGTATTANAATAACTTCTATNTACTTGNAAAACAANGGA] [+] EMBL CA757474 [AGTTGCAGCGAACAAGACATAAAAATGGCGTTAGAGAAAGCCAAGCACCTCGCTTCTTCCTCCCCTGTCTTCATCTTCAGTAAAACATATTGTGGATTCTGCGATAGGGTCAAACAGCTGTTCAAGCAGCTTGGTGCATCATACCAGGCTATTGAACTGGACAAGGAACAGGATGGAGATGCTATCCAAGCTGCTCTTCATGAGTGGACAGGACAGAGGACTGTACCAAATGTCTTCATAGGAGGAAAGCACATTGGTGGCTGTGATGCTGTGACAGCAAAGCACCAGCAAGGGCAGCTTGTGCCACTGCTCACTGAAGCCAAAGCTATAAACTCGGAGAAATAAGTAACTGCTTGAGCTCTCAGTCGAAAGGAAGGGGAACTTTGGGGTTTGAGTTCTACCTCGAGATTTGGTTGTCTCGGAGATGAGGAAGATGTTATGCTTTCAAACTTGGTCTGATGTTACTAAGTACTGTTTGGAAGTTCAAACACCTTAGAATAAAAATGGTTTGTATGAAAGTTTATAACATCAACAACTGCATAATGCANATAGATTACTGTAAATGGTTTGTATTANAATAACTTCTATNTACTTGNAAAACAANGGA] consensusID : consensus_6255#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 496 fasta sequence [ACAGAATAGCAGCAGCGAACAATACATAATAATGGCGTTAGAGAAAGCCAGGCACCTCGCTTCTTCCTCCCCTGTCTTCATCTTCAGTAAAACATATTGTGGATTCTGCGATAGGGTCAAACAGCTGTTCAAGCAGCTTGGTGCATCATACCACCGCTCTTGAACATGGACAAGGAACAGGATGGAGATGCTATCCAAGCTGCTCTTTATGAGTGGACAGGACAGAGGACTCGCCCAAATGTCTTCATAGGATGAAAGCACATTGGCGGCTGTGATGCTGTGACAGCAAAGCACCACTCAGGGCAGCTTGTGCCACTGCTCACTGAAGCCTAACCTATAACTCGGAGAAATAAGTAACTGCTTGAGCTCTCATCCTAAGGGAGGGGAACCTTCGCGTCTGAGTCTACCTTCGGACTTGTTGTCCTCGATATGAGGAAGATGTTATTCTTCCAAACCAGAGCTTGCGCTTCTACATTCTTTACGGAAGTCAAACCCC] [+] EMBL BE040272 [ACAGAATAGCAGCAGCGAACAATACATAATAATGGCGTTAGAGAAAGCCAGGCACCTCGCTTCTTCCTCCCCTGTCTTCATCTTCAGTAAAACATATTGTGGATTCTGCGATAGGGTCAAACAGCTGTTCAAGCAGCTTGGTGCATCATACCACCGCTCTTGAACATGGACAAGGAACAGGATGGAGATGCTATCCAAGCTGCTCTTTATGAGTGGACAGGACAGAGGACTCGCCCAAATGTCTTCATAGGATGAAAGCACATTGGCGGCTGTGATGCTGTGACAGCAAAGCACCACTCAGGGCAGCTTGTGCCACTGCTCACTGAAGCCTAACCTATAACTCGGAGAAATAAGTAACTGCTTGAGCTCTCATCCTAAGGGAGGGGAACCTTCGCGTCTGAGTCTACCTTCGGACTTGTTGTCCTCGATATGAGGAAGATGTTATTCTTCCAAACCAGAGCTTGCGCTTCTACATTCTTTACGGAAGTCAAACCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6255#1 ------------------------------------------------------------ consensus_6255#3 ------------------------------------------------------------ consensus_6255#0 GCTCACGCTGNGGNTGCGGTCTAGACTAGTGGATCTCCCGGCTGCNGGAATTCGGCACGA 60 consensus_6255#2 ------------------------------------------------------------ consensus_6255#1 ----------AGTTGCAAGGAAGACAACATATGACTGGCGGTAGAGAAAGCC-GGGCACC 49 consensus_6255#3 ---ACAGAATAGCAGCAGCGAACAATACATAATAATGGCGTTAGAGAAAGCC-AGGCACC 56 consensus_6255#0 GGGACAGAATAGTTGCAGCGAACAAGACATAAAAATGGCGTTAGAGAAAGCCTATANATC 120 consensus_6255#2 ----------AGTTGCAGCGAACAAGACATAAAAATGGCGTTAGAGAAAGCC-AAGCACC 49 ** *** *** * ***** * ***** *********** * * consensus_6255#1 TCGCTACTTCCTACCCTGCCTTCATCTTCAGTAGAACACTATTGTGGATGATGGGATAGG 109 consensus_6255#3 TCGCTTCTTCCTCCCCTGTCTTCATCTTCAGTAAAACA-TATTGTGGATTCTGCGATAGG 115 consensus_6255#0 TCGCTTCTTCCTCNCCTGTCTTCATCTTCAGTAAAACA-TATTGTGGATTCTGCGATAGG 179 consensus_6255#2 TCGCTTCTTCCTCCCCTGTCTTCATCTTCAGTAAAACA-TATTGTGGATTCTGCGATAGG 108 ***** ****** **** ************** **** ********** ** ****** consensus_6255#1 GGCTGAC-AGCTCCTCTAGCAGCCTGGCGCATCATACCAGGGCA-TTGAAC-TGGACCCG 166 consensus_6255#3 GTCAAAC-AGCTGTTCAAGCAGCTTGGTGCATCATACCACCGCTCTTGAACATGGACAAG 174 consensus_6255#0 GTCAAACCAGCTGTTCAAGCAGCCTGGTGCATCATACCATGCTA-TTGAAC-TGTACAAG 237 consensus_6255#2 GTCAAAC-AGCTGTTCAAGCAGCTTGGTGCATCATACCAGGCTA-TTGAAC-TGGACAAG 165 * * ** **** ** ****** *** *********** ****** ** ** * consensus_6255#1 GAACAGGAAGGAGACGCTATCCGAGCTGGTCTTCAAGAGTGTACAGGACAGAGGACTGCA 226 consensus_6255#3 GAACAGGATGGAGATGCTATCCAAGCTGCTCTTTATGAGTGGACAGGACAGAGGACTCGC 234 consensus_6255#0 GAACATGATGGAGATGCTATTCAAGCTGCTCTTCATGAGTGGACAGGACAGAGGACTGTA 297 consensus_6255#2 GAACAGGATGGAGATGCTATCCAAGCTGCTCTTCATGAGTGGACAGGACAGAGGACTGTA 225 ***** ** ***** ***** * ***** **** * ***** *************** consensus_6255#1 CCAACTAGTCATTCTTAGGATGAAAGCACATTGATGGCTGAGATGCTGAGACAGCAGAGC 286 consensus_6255#3 CCAAAT-GTC-TTCATAGGATGAAAGCACATTGGCGGCTGTGATGCTGTGACAGCAAAGC 292 consensus_6255#0 CCAAAT-GTC-TTTATAGGATGAAAGCACAT-GGTGGCTGTGATGCTGTGACAGCAAAGC 354 consensus_6255#2 CCAAAT-GTC-TTCATAGGAGGAAAGCACATTGGTGGCTGTGATGCTGTGACAGCAAAGC 283 **** * *** ** ***** ********** * ***** ******* ******* *** consensus_6255#1 ACCAGCTGGGGACAGCTTGCGCCACTGATCACTGAAGCCAAAGCTATAAACTCGGAGAAA 346 consensus_6255#3 ACCA-CTCAGGGCAGCTTGTGCCACTGCTCACTGAAGCCTAACCTATAA-CTCGGAGAAA 350 consensus_6255#0 ACTCAGCAAGGGCAGCTTGTGCCACTGCTCACTGAAGCCATAGCTATAAATCTCGAGATA 414 consensus_6255#2 AC-CAGCAAGGGCAGCTTGTGCCACTGCTCACTGAAGCCAAAGCTATAAACTCGGAGAAA 342 ** ** ******* ******* *********** * ****** **** * consensus_6255#1 CAAGTATCTGCTTGAGCTCTCAATCGAGAGGAAAGGGA-ACTTTGGGGCTTGAGGTCTAC 405 consensus_6255#3 TAAGTAACTGCTTGAGCTCTCATCCTA-AGGGAGGGGA-ACCTTCGCGTCTGAG-TCTAC 407 consensus_6255#0 TAAGTATCTGCTTGAGCTCTCAGTCGAAAGGAATGGGATACTCTGCGGTGTGAGTTCTAC 474 consensus_6255#2 TAAGTAACTGCTTGAGCTCTCAGTCGAAAGGAAGGGGA-ACTTTGGGGTTTGAGTTCTAC 401 ***** *************** * * *** * **** ** * * **** ***** consensus_6255#1 CTCGAGAATTGATTGACTCGAATATTAGGACGATGTTATGCTTTCATACTAGGGCTGATG 465 consensus_6255#3 CTTCGGACTTG-TTGTCCTCGATATGAGGAAGATGTTATTCTTCCAAACCAGAGCTTGCG 466 consensus_6255#0 CTCGTGATTGGCTCGTTTTG-AGAT-ACGAAGATGT-ATGTTT--ATACTCGG-CTGATG 528 consensus_6255#2 CTCGAGATTTGGTTGTCTCGGAGATGAGGAAGATGTTATGCTTTCAAACTTGGTCTGATG 461 ** ** * * * * * ** * ** ***** ** ** * ** * ** * consensus_6255#1 CTACTAAGGACTGATATGGAAGTTCAAACGCCTTATA-ACATCATGAGCTG----TATG- 519 consensus_6255#3 CTTCTACATTCTT-TACGGAAGT-CAAACCCC---------------------------- 496 consensus_6255#0 T-ACTAAG-ACTG-TT-GGAAGT--ANACACCTTAAATAAAATGTTTGTTGAAGTTATAC 582 consensus_6255#2 TTACTAAGTACTG-TTTGGAAGTTCAAACACCTTAGAATAAAAATGGTTTG----TATGA 516 *** ** * ****** * ** ** consensus_6255#1 AGAGCTATAACAA-CAACAACTGC-ATAATGGA-------GATAGATCACTGATAACGGT 570 consensus_6255#3 ------------------------------------------------------------ consensus_6255#0 ATATCACTGATATGCAATAGATACTGTAATGGTTGCTTCTCAACAATCACTATAATCACT 642 consensus_6255#2 AAGTTTATAACAT-CAACAACTGC-ATAATG-------CANATAGATTACTGTAAATGGT 567 consensus_6255#1 TCGTATTGCATTTCCTTCTATTTACTTGAAAGACAAGGGAAAGTTGAGATGCTCGTGGGG 630 consensus_6255#3 ------------------------------------------------------------ consensus_6255#0 TATTA--ACAAATATTCCTCTTGGGGTGCCGGACCATATTCTCTTANGGAGTTGTTACGC 700 consensus_6255#2 TTGTATTANAATAACTTCTATNTACTTGNAAAACAANGGA-------------------- 607 consensus_6255#1 GATCCCGGCT-------------------------------------------------- 640 consensus_6255#3 ------------------------------------------------------------ consensus_6255#0 GCGCACGTGCCTCTGTATACTACTACTGTGTGGGAAACTCTGTGGTACCTAATANATCTC 760 consensus_6255#2 ------------------------------------------------------------ consensus_6255#1 ------------------------------------------------------------ consensus_6255#3 ------------------------------------------------------------ consensus_6255#0 TATGAGTCTATCTCCCTTTGCTAGTCTGTCGGAGTANGAGAAGTCACTATCGTNCAGTCT 820 consensus_6255#2 ------------------------------------------------------------ consensus_6255#1 ------------------------------------------------------------ consensus_6255#3 ------------------------------------------------------------ consensus_6255#0 CTCAAANCTACGCCATCATGATTGAGTACTGGACCTCACTTGTNCTTGCCTACTACTACG 880 consensus_6255#2 ------------------------------------------------------------ consensus_6255#1 ------------------------------------------------------------ consensus_6255#3 ------------------------------------------------------------ consensus_6255#0 CGTCGGTCGTGTGTGTNACGCTGTGNTACATGCTCACACGANACGCTCTAACACTCTAAT 940 consensus_6255#2 ------------------------------------------------------------ consensus_6255#1 ------------------------------------------------ consensus_6255#3 ------------------------------------------------ consensus_6255#0 CTTCTCATATCACTCTTTTCTAGCNCAGTGCTGGTCTTCACGATTACT 988 consensus_6255#2 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||