These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6257#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1120 fasta sequence [GATTCAATCTTCAGTGTCACTGGTAACAAGATCAATTGAGTGCCTGCAAGCTTGTGAAAACACTTCAGTTTCAGCTGAAGGACAACTTGAGAGAGCAATGGGATGGGCTTGTGCTGGTCCAAATACTTCTGGAGCAGGCAGTTCAACCACAAAGGCTTCAGGAATCCCATCTGAATTTCATGATCATCTGTTAAAAAGGAGGAAATTGCTTTGGGTCATCCAAGAACAGGCATCTGATCTTGCTAACATCTGCACATCTGTTTTGGAGTTTGAAGGATCGAGAGACGGAATTTACCTTATTCCTGAGGATAAATCTTCCGGACAATCTACTGACAGAGGCAGGACATGGCAGCAAACTTTCTTGAATCTCCTGACACGTCTAGATGCAGCATATCGTTCTTTCACATGTGCAGAACAAGAGTGGAAACTCAGTCAGTTCAACATGGAAAGTGCTGGGAAAAGCTTGTATTCAGTAACCAATCAGCTCTCTGTAGTCTCTTCGAGAGCAAAATCTGCTTTAGTTAATCTACAGGATACTCTTGTGTCCATGTATGAACGAGCTTCTGAAGTCACTGCATCATTATCTGGGTTCAAACATGTTTCACAGGATCGCACTGCTTTGACTTCTGAATGTGGTTCGTTACTAGAGGAGGTTTTGGCAATAGCAGAGGGGTTGCATGATGTATATATCGTGGGAAAGGAAGCTGCTGTTATGCACAATTCAATTATGTCCAATCTTTCAAAGGCAAACACAATTTTACTTCCACTCGAAGCCTCATTGTCTGCTGATTTAGCTGTTATGTCTGAAGCAATCTCAAAGGAAAGAGAGAAGAATAATACCAGCATGCCTCTTATTCATGGAAAGGCATTATACCAATCTTACATTATTAGAATACGGGATGCTTACAAAAATTTAGAACCTCTGGTGCCCCCACTTGCTGACGATGCGAAGGAGTTGCACTCCTTGATGACTAAGCTTGGACGCCTTTCTAGTATTCATGCAGGGAGCCTTCATAAGGCTCTAGAAGTTCTTGGTGAAAGTGAAACTGTGAAGTCACAGGATATGCCTTCAACACATGCAGATATTTTGCAGAGTGATTCATNCATTGAGAAGGATAAA] [+] EMBL CB640317 [GATTCAATCTTCAGTGTCACTGGTAACAAGATCAATTGAGTGCCTGCAAGCTTGTGAAAACACTTCAGTTTCAGCTGAAGGACAACTTGAGAGAGCAATGGGATGGGCTTGTGCTGGTCCAAATACTTCTGGAGCAGGCAGTTCAACCACAAAGGCTTCAGGAATCCCATCTGAATTTCATGATCATCTGTTAAAAAGGAGGAAATTGCTTTGGGTCATCCAAGAACAGGCATCTGATCTTGCTAACATCTGCACATCTGTTTTGGAGTTTGAAGGATCGAGAGACGGAATTTACCTTATTCCTGAGGATAAATCTTCCGGACAATCTACTGACAGAGGCAGGACATGGCAGCAAACTTTCTTGAATCTCCTGACACGTCTAGATGCAGCATATCGTTCTTTCACATGTGCAGAACAAGAGTGGAAACTCAGTCAGTTCAACATGGAAAGTGCTGGGAAAAGCTTGTATTCAGTAACCAATCAGCTCTCTGTAGTCTCTTCGAGAGCAAAATCTGCTTTAGTTAATCTACAGGATACTCTTGTGTCCATGTATGAACGAGCTTCTGAAGTCACTGCATCATTATCTGGGTTCAAACATGTTTCACAGGATCGCACTGCTTTGAC ] [+] EMBL CB666951 [ CGTCTAGATGCAGCATATCGTTCTTTCACATGTGCAGAACAAGAGTGGAAACTCAGTCAGTTCAACATGGAAAGTGCTGGGAAAAGCTTGTATTCAGTAACCAATCAGCTCTCTGTAGTCTCTTCGAGAGCAAAATCTGCTTTAGTTAATCTACAGGATACTCTTGTGTCCATGTATGAACGAGCTTCTGAAGTCACTGCATCATTATCTGGGTTCAAACATGTTTCACAGGATCGCACTGCTTTGACTTCTGAATGTGGTTCGTTACTAGAGGAGGTTTTGGCAATAGCAGAGGGGTTGCATGATGTATATATCGTGGGAAAGGAAGCTGCTGTTATGCACAATTCAATTATGTCCAATCTTTCAAAGGCAAACACAATTTTACTTCCACTCGAAGCCTCATTGTCTGCTGATTTAGCTGTTATGTCTGAAGCAATCTCAAAGGAAAGAGAGAAGAATAATACCAGCATGCCTCTTATTCATGGAAAGGCATTATACCAATCTTACATTATTAGAATACGGGATGCTTACAAAAATTTAGAACCTCTGGTGCCCCCACTTGCTGACGATGCGAAGGAGTTGCACTCCTTGATGACTAAGCTTGGACGCCTTTCTAGTATTCATGCAGGGAGCCTTCATAAGGCTCTAGAAGTTCTTGGTGAAAGTGAAACTGTGAAGTCACAGGATATGCCTTCAACACATGCAGATATTTTGCAGAGTGATTCATNCATTGAGAAGGATAAA] consensusID : consensus_6257#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence [AATTTGAACGATACAAGGCTCTAGAAGTTCTTGGTGAAAGTGAAACTGTAAGTCACAGGATATGCCTTCAACACATGCAGATATTTTGCAGAGTGATTCATCAATTGAGAAGGATAAAGGTTCTTCTGGGAGCAGGGAAGGTGGATCTCAGGATTTAGTAACGACCACTGATCTTTCTTTACAAGATGAATGCTGGATTTCTCCTCCCGAACACTCATATACNAGCAGTTCTGGATATACCACAGAGTTAACCCAGATTACTTCTTCTGAGAACATAGAGAATATGGATCCCTTATTGGTTGACAGGCCTGTGATAGAAGCTCCTGGTGCTAATGATCAGGANAGAGGGGCTGATTCGGAATCAGATTCAAGTAGCAATAAGCAGTTGTTCATAAACNATGTTACATTGACGAATGTTAATAGTGTTGATGAGGTTGAAATCTCATTGTCAAAGGAGAGGAAATCTGAANATGAGAATACAAATTTGCCATTCANACAGATTAGAGGACAAGAATGTGATAACAGTGATCCTAAATCCTATCCAGATTCTGTGACTCGATTGACAAGAGGTAAAAATCCTTTTGCTNTGTCCATACTGAAAGCAGTGGAGCA] [+] EMBL CA754455 [AATTTGAACGATACAAGGCTCTAGAAGTTCTTGGTGAAAGTGAAACTGTAAGTCACAGGATATGCCTTCAACACATGCAGATATTTTGCAGAGTGATTCATCAATTGAGAAGGATAAAGGTTCTTCTGGGAGCAGGGAAGGTGGATCTCAGGATTTAGTAACGACCACTGATCTTTCTTTACAAGATGAATGCTGGATTTCTCCTCCCGAACACTCATATACNAGCAGTTCTGGATATACCACAGAGTTAACCCAGATTACTTCTTCTGAGAACATAGAGAATATGGATCCCTTATTGGTTGACAGGCCTGTGATAGAAGCTCCTGGTGCTAATGATCAGGANAGAGGGGCTGATTCGGAATCAGATTCAAGTAGCAATAAGCAGTTGTTCATAAACNATGTTACATTGACGAATGTTAATAGTGTTGATGAGGTTGAAATCTCATTGTCAAAGGAGAGGAAATCTGAANATGAGAATACAAATTTGCCATTCANACAGATTAGAGGACAAGAATGTGATAACAGTGATCCTAAATCCTATCCAGATTCTGTGACTCGATTGACAAGAGGTAAAAATCCTTTTGCTNTGTCCATACTGAAAGCAGTGGAGCA] consensusID : consensus_6257#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 318 fasta sequence [AATACTTCTGGAGCAGGCAGTTCAACCACAAAGGCTTCAGGAATCCCATCTGAATTTCATGATCATCTGTTAATACTTCTGGAGCAGGCAGTTCAACCACAAAGGCTTCAGGAATCCCATCTGAATTTCATGATCATCTGTTAAAAAGGAGGAAATTGCTTTGGGTCATCCAAGAACAGGCATCTGATCTTGCTAACATCTGCACATCTGTTTTGGAGTTTGAAGGATCGAGAGACGGAATTTACCTTATTCCTGAGGATAAATCTTCCGGACAATCTACTGACAGAGGCAGGACATGGCAGCAAACTTTCTTGAATC] [+] EMBL D43403 [AATACTTCTGGAGCAGGCAGTTCAACCACAAAGGCTTCAGGAATCCCATCTGAATTTCATGATCATCTGTTAATACTTCTGGAGCAGGCAGTTCAACCACAAAGGCTTCAGGAATCCCATCTGAATTTCATGATCATCTGTTAAAAAGGAGGAAATTGCTTTGGGTCATCCAAGAACAGGCATCTGATCTTGCTAACATCTGCACATCTGTTTTGGAGTTTGAAGGATCGAGAGACGGAATTTACCTTATTCCTGAGGATAAATCTTCCGGACAATCTACTGACAGAGGCAGGACATGGCAGCAAACTTTCTTGAATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6257#0 GATTCAATCTTCAGTGTCACTGGTAACAAGATCAATTGAGTGCCTGCAAGCTTGTGA--- 57 consensus_6257#2 ----------------------------------------------AATACTTCTGG--- 11 consensus_6257#1 ------AATTTGAACGATACAAGGCTCTAGAAGTTCTTGGTGAAAGTGAAACTGTAAGTC 54 * * consensus_6257#0 AAACACTTCAGTTTCAGCTGAAGGACA-ACTTGAGAGAGCAATGGGATGGGCTTGTGCTG 116 consensus_6257#2 AGCAGG--CAGTTCAACCACAAAGGC---TTCAGGAATCCCATCTGAATTTCATGATCAT 66 consensus_6257#1 ACAGGATATGCCTTCAACACATGCAGATATTTTGCAGAGTGAT-TCATCAATTGAGAAGG 113 * * * * * * * ** * consensus_6257#0 GTCCAAATACTTCTGG-AGCAGGCA-GTTCAACCACAAAGGCTTCAGGAATCCCATCTGA 174 consensus_6257#2 CTGTTAATACTTCTGG-AGCAGGCA-GTTCAACCACAAAGGCTTCAGGAATCCCATCTGA 124 consensus_6257#1 ATAAAGGTTCTTCTGGGAGCAGGGAAGGTGGATCTC--AGGATTTAGTAACGACCACTGA 171 * * ******* ****** * * * * * * *** ** ** ** * **** consensus_6257#0 ATTTCATGATCATCTGTTAAAAAGGAGGAAATTGCTTTGGGTCATCCAAGAACAGGCA-- 232 consensus_6257#2 ATTTCATGATCATCTGTTAAAAAGGAGGAAATTGCTTTGGGTCATCCAAGAACAGGCA-- 182 consensus_6257#1 TCTTTCT--TTACAAGATGAATGCTGGATTTCTCCTCCCGAACACTCATATACNAGCAGT 229 ** * * * * * ** * * ** * ** ** ** *** consensus_6257#0 TCTGATCTTGCTAACATCTGCACATCTGTTTTGGAGTTTGAAGGATCGAGAGACGGAATT 292 consensus_6257#2 TCTGATCTTGCTAACATCTGCACATCTGTTTTGGAGTTTGAAGGATCGAGAGACGGAATT 242 consensus_6257#1 TCTGGATATACCA-CAGAGTTAACCCAGATTACTTCTTCTGAGAACATAGAGAATATGGA 288 **** * * * ** * * * ** ** ** * ***** consensus_6257#0 TACCTTATTCCTGAGGATAAATCTTCCGGACAATCTACTGAC----AGAGGCAGGACATG 348 consensus_6257#2 TACCTTATTCCTGAGGATAAATCTTCCGGACAATCTACTGAC----AGAGGCAGGACATG 298 consensus_6257#1 TCCCTTATT--GGTTGACAGGCCTGTGATAGAAGCTCCTGGTGCTAATGATCAGGANAGA 346 * ******* * ** * ** * ** ** *** * ***** * consensus_6257#0 GCAGCAAACTTT---CTTGAATCTCCTGACA-CGTCTAGATGCAGCATATCGTTCTTTCA 404 consensus_6257#2 GCAGCAAACTTT---CTTGAATC------------------------------------- 318 consensus_6257#1 GGGGCTGATTCGGAATCAGATTCAAGTAGCAATAAGCAGTTGTTCATAAACNATGTTACA 406 * ** * * ** ** consensus_6257#0 CATGTGCAGAACAAGAGTGGAAACTCAGTCAGTTCAACATGGAAAGTGCTGGGAAAAGCT 464 consensus_6257#2 ------------------------------------------------------------ consensus_6257#1 TTGACGAATGTTAATAGTGTTGATGAGGTTGAAATCTCATTGTCAAAGGAGAGGAAATCT 466 consensus_6257#0 TGTATTCAGTA-ACCAATCAGCTCTCTGTAGTCTCTTCGAGAGCAAAATCTGCTTTAGTT 523 consensus_6257#2 ------------------------------------------------------------ consensus_6257#1 GAANATGAGAATACAAATTTGCCATTCANACAGATTAGAGGACAAGAATGTGATAACAGT 526 consensus_6257#0 AATCTACAGGATACTCTTGTGTCCATGTATGAACGAGCTTCTGAAGTCACTGCATCATTA 583 consensus_6257#2 ------------------------------------------------------------ consensus_6257#1 GATCCTAAATCCTATCCAGATTCTGTGACT---CGATTGACAAGAGGTAAAAATCCTTTT 583 consensus_6257#0 TCTGGGTTCAAACATGTTTCACAGGATCGCACTGCTTTGACTTCTGAATGTGGTTCGTTA 643 consensus_6257#2 ------------------------------------------------------------ consensus_6257#1 GCTNTGTCCATACTGAAAGCAGTGGAGCA------------------------------- 612 consensus_6257#0 CTAGAGGAGGTTTTGGCAATAGCAGAGGGGTTGCATGATGTATATATCGTGGGAAAGGAA 703 consensus_6257#2 ------------------------------------------------------------ consensus_6257#1 ------------------------------------------------------------ consensus_6257#0 GCTGCTGTTATGCACAATTCAATTATGTCCAATCTTTCAAAGGCAAACACAATTTTACTT 763 consensus_6257#2 ------------------------------------------------------------ consensus_6257#1 ------------------------------------------------------------ consensus_6257#0 CCACTCGAAGCCTCATTGTCTGCTGATTTAGCTGTTATGTCTGAAGCAATCTCAAAGGAA 823 consensus_6257#2 ------------------------------------------------------------ consensus_6257#1 ------------------------------------------------------------ consensus_6257#0 AGAGAGAAGAATAATACCAGCATGCCTCTTATTCATGGAAAGGCATTATACCAATCTTAC 883 consensus_6257#2 ------------------------------------------------------------ consensus_6257#1 ------------------------------------------------------------ consensus_6257#0 ATTATTAGAATACGGGATGCTTACAAAAATTTAGAACCTCTGGTGCCCCCACTTGCTGAC 943 consensus_6257#2 ------------------------------------------------------------ consensus_6257#1 ------------------------------------------------------------ consensus_6257#0 GATGCGAAGGAGTTGCACTCCTTGATGACTAAGCTTGGACGCCTTTCTAGTATTCATGCA 1003 consensus_6257#2 ------------------------------------------------------------ consensus_6257#1 ------------------------------------------------------------ consensus_6257#0 GGGAGCCTTCATAAGGCTCTAGAAGTTCTTGGTGAAAGTGAAACTGTGAAGTCACAGGAT 1063 consensus_6257#2 ------------------------------------------------------------ consensus_6257#1 ------------------------------------------------------------ consensus_6257#0 ATGCCTTCAACACATGCAGATATTTTGCAGAGTGATTCATNCATTGAGAAGGATAAA 1120 consensus_6257#2 --------------------------------------------------------- consensus_6257#1 --------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||