cluster # 6263

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Oryza sativa
cluster # 6263 cluster # 6263 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6263#0 length = 446 sequences # 3

consensus_6263#1 length = 158 sequences # 1

consensusID : consensus_6263#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 446
fasta sequence

                              [ATCGCCGGCTACTGATCGTTGATACCACATCATATCGTTGATGATGATTTGAGGTGTTCTTGCGTGTAGATAGGTCGATCGGGGGTCATTCTTTGGACCGATCGATATATGGACGTTAATTTGTTCGTCTTTGTGTGTTATTTGTATATAGGAGATGAGATTTACTCCGGTCCAACAAAAAGTAACTCGAGGTACCGATACCTCACGGTACCAAATTGTTTCCGATCGTTGGATCTAGCTGGGTGGGTTGGGCATCGTTAGATCCAACGATCGGAAATGATTTTGTACCGCGAGGTACCGATACCTCGAGATACTTTTTGTTGGACCGAAGAAAAACTCATATAGGAGATGGGTGCTCTTGTTCGTAGTTTGTTTGATTCTGTTATTTTTTTTCTCTTGTAGATATAAAAGAGATTGGGATTTGTTTCAAAAAAAAAAAAAAAAAA]

[+] EMBL AU057957             [ATCGCCGGCTACTGATCGTTGATACCACATCATATCGTTGATGATGATTTGAGGTGTTCTTGCGTGTAGATAGGTCGATCGGGGGTCATTCTTTGGACCGATCGATATATGGACGTTAATTTGTTCGTCTTTGTGTGTTATTTGTATATAGGAGATGAGATTTACTCCGGTCCAACAAAAAGTAACTCGAGGTACCGATACCTCACGGTACCAAATTGTTTCCGATCGTTGGATCTAGCTGGGTGGGTTGGGCATCGTTAGATCCAACGATCGGAAATGATTTTGTACCGCGAGGTACCGATACCTCGAGATACTTTTTGTTGGACCGAAGAAAAACTCATATAGGAGATGGGTGCTCTTGTTCGTAGTTTGTTTGATTCTGTTATTTTTTTTCTCTTGTAGATATAAAAGAGATTGGGATTTGTTTCAAAAAAAAAAAAAAAAAA]
[+] EMBL AU108277             [ATCGCCGGCTACTGATCGTTGATACCACATCATATCGTTGATGATGATTTGAGGTGTTCTTGCGTGTAGATAGGTCGATCGGGGGTCATTCTTTGGACCGATCGATATATGGACGTTAATTTGTTCGTCTTTGTGTGTTATTTGTATATAGGAGATGAGATTTACTCCGGTCCAACAAAAAGTAACTCGAGGTACCGATACCTCACGGTACCAAATTGTTTCCGATCGTTGGATCTAGCTGGGTGGGTTGGGCATCGTTAGATCCAACGATCGGAAATGATTTTGTACCGCGAGGTACCGATACCTCGAGATACTTTTTGTTGGACCGAAGAAAAACTCATATAGGAGATGGGTGCTCTTGTTCGTAGTTTGTTTGATTCTGTTATTTTTTTTCTCTTGTAGATATAAAAGAGATTGGGATTTGTTTCGCTGAAAAAAAAAA    ]
[+] EMBL AU082568             [ATCGCCGGCTACTGATCGTTGATACCACATCATATCGTTGATGATGATTTGAGGTGTTCTTGCGTGTAGATAGGTCGATCGGGGGTCATTCTTTGGACCGATCGATATATGGACGTTAATTTGTTCGTCTTTGTGTGTTATTTGTATATAGGAGATGAGATTTACTCCGGTCCAACAAAAAGTAACTCGAGGTACCGATACCTCACGGTACCAAATTGTTTCCGATCGTTGGATCTAGCTGGGTGGGTTNGGCATCGTTAGATCCAACGATCGGAAATGATTTTGTACCGCGA GTACCGATACCTCGAGATACTTTTTGTTGGACCGAAGAAAAACTCATATAGGA                                                                                                   ]




>consensus_6263#0
ATCGCCGGCTACTGATCGTTGATACCACATCATATCGTTGATGATGATTTGAGGTGTTCT
TGCGTGTAGATAGGTCGATCGGGGGTCATTCTTTGGACCGATCGATATATGGACGTTAAT
TTGTTCGTCTTTGTGTGTTATTTGTATATAGGAGATGAGATTTACTCCGGTCCAACAAAA
AGTAACTCGAGGTACCGATACCTCACGGTACCAAATTGTTTCCGATCGTTGGATCTAGCT
GGGTGGGTTGGGCATCGTTAGATCCAACGATCGGAAATGATTTTGTACCGCGAGGTACCG
ATACCTCGAGATACTTTTTGTTGGACCGAAGAAAAACTCATATAGGAGATGGGTGCTCTT
GTTCGTAGTTTGTTTGATTCTGTTATTTTTTTTCTCTTGTAGATATAAAAGAGATTGGGA
TTTGTTTCAAAAAAAAAAAAAAAAAA

consensusID : consensus_6263#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 158
fasta sequence

                              [CAAGATACTTTTTGTTGGACCGAAGCAAAAACTCATATAGGAGATGGGTGCTCTTGTCCGTAGTTTGTTTGATTCTGTTATTTTTTCCTCTTGTAGATATAAAAGAGATTGGGATTTGTTTCGCTGTGTTCTTGTTTAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL BQ529310             [CAAGATACTTTTTGTTGGACCGAAGCAAAAACTCATATAGGAGATGGGTGCTCTTGTCCGTAGTTTGTTTGATTCTGTTATTTTTTCCTCTTGTAGATATAAAAGAGATTGGGATTTGTTTCGCTGTGTTCTTGTTTAAAAAAAAAAAAAAAAAAAAA]




>consensus_6263#1
CAAGATACTTTTTGTTGGACCGAAGCAAAAACTCATATAGGAGATGGGTGCTCTTGTCCG
TAGTTTGTTTGATTCTGTTATTTTTTCCTCTTGTAGATATAAAAGAGATTGGGATTTGTT
TCGCTGTGTTCTTGTTTAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6263#0      ATCGCCGGCTACTGATCGTTGATACCACATCATATCGTTGATGATGATTTGAGGTGTTCT 60
consensus_6263#1      ------------------------------------------------------------
                                                                                  

consensus_6263#0      TGCGTGTAGATAGGTCGATCGGGGGTCATTCTTTGGACCGATCGATATATGGACGTTAAT 120
consensus_6263#1      ------------------------------------------------------------
                                                                                  

consensus_6263#0      TTGTTCGTCTTTGTGTGTTATTTGTATATAGGAGATGAGATTTACTCCGGTCCAACAAAA 180
consensus_6263#1      ------------------------------------------------------------
                                                                                  

consensus_6263#0      AGTAACTCGAGGTACCGATACCTCACGGTACCAAATTGTTTCCGATCGTTGGATCTAGCT 240
consensus_6263#1      ------------------------------------------------------------
                                                                                  

consensus_6263#0      GGGTGGGTTGGGCATCGTTAGATCCAACGATCGGAAATGATTTTGTACCGCGAGGTACCG 300
consensus_6263#1      ------------------------------------------------------------
                                                                                  

consensus_6263#0      ATACCTCGAGATACTTTTTGTTGGACCGAAG-AAAAACTCATATAGGAGATGGGTGCTCT 359
consensus_6263#1      ------CAAGATACTTTTTGTTGGACCGAAGCAAAAACTCATATAGGAGATGGGTGCTCT 54
                            * *********************** ****************************

consensus_6263#0      TGTTCGTAGTTTGTTTGATTCTGTTATTTTTTTTCTCTTGTAGATATAAAAGAGATTGGG 419
consensus_6263#1      TGTCCGTAGTTTGTTTGATTCTGTTATTTTTTC-CTCTTGTAGATATAAAAGAGATTGGG 113
                      *** ****************************  **************************

consensus_6263#0      ATTTGTTTC---------------AAAAAAAAAAAAAAAAAA--- 446
consensus_6263#1      ATTTGTTTCGCTGTGTTCTTGTTTAAAAAAAAAAAAAAAAAAAAA 158
                      *********               ******************