These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6264#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1103 fasta sequence [CCTCTCCGCATCCCACAGCCACAAGCGGCGCCGCACCACTTCGTCCTCAACCAAAACCTCCGCCGCCGCCGCCGCCGGAGAAGGAGGAGGAGGAGGAGTAGGGAGAGTAAGCGGGGAGAGGAAGATGTCGTTCCGTGCGCGGGAGATGTACAAGAAGGTGGTGCGGCGCGTGGGCGGCGAGGGGAAGCTGCCGGCGGAGCTGATGGCGTCGGTGAAGAACTTGCTGCCTGACAGCAAGGTCGTCATGGGGAGGGCCAAGCGCGGCATCTACGCCGGACGCCACATCCAGTTCGGCAACAAGGTCTCCGAGGACGGTGGCAACAAGTCAAGGCGAACATGGAAGCCAAATGTTCAGGAGAAGCGTCTTTTTAGCTATATTCACGACCGGCACATTAGGGTCAAGGTAACCACCCATGCTCTTCGGTGCATTGACAAAGCTGGTGGGATAGACGAATACCTCCTGAAGACACCTTACAACAAAATGGATACTGAGAT-GGGGGTAGC-CTGGAAGGCAAAGATTGAG-AAGATGTATTCACAGCTAGCTCAAATGGAGGTAGGCTTCTTCTCTCCTGAGGAAGAGACTAAGATCGAACAGGGTTTTGAGGAGGCTCGAGCTGCCAAGAGAGAGCACCGCAGGGAAGCAAGAAGAGCTTTGGCTAAGCAGACTCAGCTAGAAGCTGGTAACGCTGGTGGTGAC-AAACAGCTGAAGCTGCTTCTAATGTTGCAGTGAAGTCCTAGCTTGGACCTATCTGCTCGTCATGATTGGTCAAAAGGAGAATCATTGAGTGCCACTGACCAAATAATGGAGGATTTTCGTTTCATATAAAGCAGGGATCATATGCTGAGTCAGTAACCCCTGTTTACTGGCAGCAGCAGCAGTGTATGGTAAGCTGGAGTCTAATACTATCAGCATGTGGGTGTTGTAAGCAGTTGCTGAACAAAATCAGTTAGGTGGAAATTTTGTACACTTACTGAATACTCGTGTCAGAGTTCAGATAACTTTCTTGTAGAATTTTGTATCTTCTACTACTGCCCATTCAACTTAAACGTCGAAATAATCTATGCTTGCCAGGATACGTGGTAATGTGCTACGGAGCTATGCC] [+] EMBL AK070349 [CCTCTCCGCATCCCACAGCCACAAGCGGCGCCGCACCACTTCGTCCTCAACCAAAACCTCCGCCGCCGCCGCCGCCGGAGAAGGAGGAGGAGGAGGAGTAGGGAGAGTAAGCGGGGAGAGGAAGATGTCGTTCCGTGCGCGGGAGATGTACAAGAAGGTGGTGCGGCGCGTGGGCGGCGAGGGGAAGCTGCCGGCGGAGCTGATGGCGTCGGTGAAGAACTTGCTGCCTGACAGCAAGGTCGTCATGGGGAGGGCCAAGCGCGGCATCTACGCCGGACGCCACATCCAGTTCGGCAACAAGGTCTCCGAGGACGGTGGCAACAAGTCAAGGCGAACATGGAAGCCAAATGTTCAGGAGAAGCGTCTTTTTAGCTATATTCACGACCGGCACATTAGGGTCAAGGTAACCACCCATGCTCTTCGGTGCATTGACAAAGCTGGTGGGATAGACGAATACCTCCTGAAGACACCTTACAACAAAATGGATACTGAGAT GGGGGTAGC CTGGAAGGCAAAGATTGAG AAGATGTATTCACAGCTAGCTCAAATGGAGGTAGGCTTCTTCTCTCCTGAGGAAGAGACTAAGATCGAACAGGGTTTTGAGGAGGCTCGAGCTGCCAAGAGAGAGCACCGCAGGGAAGCAAGAAGAGCTTTGGCTAAGCAGACTCAGCTAGAAGCTGGTAACGCTGGTGGTGAC AAACAGCTGAAGCTGCTTCTAATGTTGCAGTGAAGTCCTAGCTTGGACCTATCTGCTCGTCATGATTGGTCAAAAGGAGAATCATTGAGTGCCACTGACCAAATAATGGAGGATTTTCGTTTCATATAAAGCAGGGATCATATGCTGAGTCAGTAACCCCTGTTTACTGGCAGCAGCAGCAGTGTATGGTAAGCTGGAGTCTAATACTATCAGCATGTGGGTGTTGTAAGCAGTTGCTGAACAAAATCAGTTAGGTGGAAATTTTGTACACTTACTGAATACTCGTGTCAGAGTTCAGATAACTTTCTTGTAGAATTTTGTATCTTCTACTACTGCCCATTCAACTTAAACGTCGAAATAATCTATGCTTGCCAGGATACGTGGTAATGTGCTACGGAGCTATGCC] [+] EMBL CF323157 [ ctcgtgccGAGAGGAAGATGTCGTTCCGTGCGCGGGAGATGTACAAGAAGGTGGTGCGGCGCGTGGGCGGCGAGGGGAAGCTGCCGGCGGAGCTGATGGCGTCGGTGAAGAACTTGCTGCCTGACAGCAAGGTCGTCATGGGGAGGGCCAAGCGCGGCATCTACGCCGGACGCCACATCCAGTTCGGCAACAAGGTCTCCGAGGACGGTGGCAACAAGTCAAGGCGAACATGGAAGCCAAATGTTCAGGAGAAGCGTCTTTTTAGCTATATTCACGACCGGCACATTAGGGTCAAGGTAACCACCCATGCTCTTCGGTGCATTGACAAAGCTGGTGGGATAGACGAATACCTCCTGAAGACACCTTACAACAAAATGGATACTGAGATGGGGGGTAGCNTTGGAAGGCAAAGATTGAGAAAGATGTATTCACAGCTAGCTCAAATGGAGGTAGGCTTCTTCTCTCCTGAGGAAGAGACTA ] [+] EMBL CA999897 [ AAGGTAACCACCCATGCTCTTCGGTGCATTGACAAAGCTGGTGGGATAGACGAATACCTCCTGAAGACACCTTACAACAAAATGGATACTGAGAT GGGGGTAGC CTGGAAGGCAAAGATTGAG AAGATGTATTCACAGCTAGCTCAAATGGAGGTAGGCTTCTTCTCTCCTGAGGAAGAGACTAAGATCGAACAGGGTTTTGAGGAGGCTCGAGCTGCCAAGAGAGAGCACCGCAGGGAAGCAAGAAGAGCTTTGGCTAAGCAGACTCAGCTAGAAGCTGGTAACGCTGGTGGTGACAAAACAGCTGAAGCTGCTTCTAATGTTGCAGTGAAGTCCTAGCTTGGACCTATCTGCTCGTCATGATTGGTCAAAAGGAGAATCATTGAGTGCCACTGACCAAATAATGGAGGATTTTCGTTTCATATAAAGCAGGGATCATATGCTGAGTCAGTAACCCCTGTTTACTGGCAGCAGCAGCAGTGTATGGTAAGCTGGAGTCTAATACTATCAGCATGTGGGTGTTGTAAGCAGTTGCTGAA AAAATCAGTTAGGTGGAAATTTTGTACACTTACTGA ] consensusID : consensus_6264#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 302 fasta sequence [TGTACTCCAAATAACTCGACATACTCCTCTTGCAGGTCCAAAGGAGAATCACTTGAGTGCCACTGACCAAATAATGGAGGATTTTCGTTTCATATAAAGCCACGGGATCATATGCTGAGTCAGTAACCCCTGTTTACTGGCAGCAGCAGCCAGTGTATGGTAAGCCTGGAGTCTAATACTATCAGCATGTGGGTGTTGTAAGCCAGTTGCTGAACCAAATCAGTTAGGTGGAAATTTTGTACACTTACTGAATACCTCGTGTCAGAGTTCAGATAACTTTCTTGTAGAATTTTGTATCTTCT] [+] EMBL BI805622 [TGTACTCCAAATAACTCGACATACTCCTCTTGCAGGTCCAAAGGAGAATCACTTGAGTGCCACTGACCAAATAATGGAGGATTTTCGTTTCATATAAAGCCACGGGATCATATGCTGAGTCAGTAACCCCTGTTTACTGGCAGCAGCAGCCAGTGTATGGTAAGCCTGGAGTCTAATACTATCAGCATGTGGGTGTTGTAAGCCAGTTGCTGAACCAAATCAGTTAGGTGGAAATTTTGTACACTTACTGAATACCTCGTGTCAGAGTTCAGATAACTTTCTTGTAGAATTTTGTATCTTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6264#0 CCTCTCCGCATCCCACAGCCACAAGCGGCGCCGCACCACTTCGTCCTCAACCAAAACCTC 60 consensus_6264#1 ------------------------------------------------------------ consensus_6264#0 CGCCGCCGCCGCCGCCGGAGAAGGAGGAGGAGGAGGAGTAGGGAGAGTAAGCGGGGAGAG 120 consensus_6264#1 ------------------------------------------------------------ consensus_6264#0 GAAGATGTCGTTCCGTGCGCGGGAGATGTACAAGAAGGTGGTGCGGCGCGTGGGCGGCGA 180 consensus_6264#1 ------------------------------------------------------------ consensus_6264#0 GGGGAAGCTGCCGGCGGAGCTGATGGCGTCGGTGAAGAACTTGCTGCCTGACAGCAAGGT 240 consensus_6264#1 ------------------------------------------------------------ consensus_6264#0 CGTCATGGGGAGGGCCAAGCGCGGCATCTACGCCGGACGCCACATCCAGTTCGGCAACAA 300 consensus_6264#1 ------------------------------------------------------------ consensus_6264#0 GGTCTCCGAGGACGGTGGCAACAAGTCAAGGCGAACATGGAAGCCAAATGTTCAGGAGAA 360 consensus_6264#1 ------------------------------------------------------------ consensus_6264#0 GCGTCTTTTTAGCTATATTCACGACCGGCACATTAGGGTCAAGGTAACCACCCATGCTCT 420 consensus_6264#1 ------------------------------------------------------------ consensus_6264#0 TCGGTGCATTGACAAAGCTGGTGGGATAGACGAATACCTCCTGAAGACACCTTACAACAA 480 consensus_6264#1 ------------------------------------------------------------ consensus_6264#0 AATGGATACTGAGATGGGGGTAGCCTGGAAGGCAAAGATTGAGAAGATGTATTCACAGCT 540 consensus_6264#1 ------------------------------------------------------------ consensus_6264#0 AGCTCAAATGGAGGTAGGCTTCTTCTCTCCTGAGGAAGAGACTAAGATCGAACAGGGTTT 600 consensus_6264#1 ------------------------------------------------------------ consensus_6264#0 TGAGGAGGCTCGAGCTGCCAAGAGAGAGCACCGCAGGGAAGCAAGAAGAGCTTTGGCTAA 660 consensus_6264#1 ------------------------------------------------------------ consensus_6264#0 GCAGACTCAGCTAGAAGCTGGTAACGCTGGTGGTGACAAACAGCTGAAGCTGCTTCTAAT 720 consensus_6264#1 ------------------------------------------------------------ consensus_6264#0 GTTGCAGTGAAGTCCTAGCTTGGACCTATCTGCTCGTCATGATTGGTCAAAAGGAGAATC 780 consensus_6264#1 -------TGTACTCCAAA--TAACTCGACATACTCCTCTTG-CAGGTCCAAAGGAGAATC 50 ** * *** * * * * * *** ** ** **** *********** consensus_6264#0 A-TTGAGTGCCACTGACCAAATAATGGAGGATTTTCGTTTCATATAAAGCA--GGGATCA 837 consensus_6264#1 ACTTGAGTGCCACTGACCAAATAATGGAGGATTTTCGTTTCATATAAAGCCACGGGATCA 110 * ************************************************ ******* consensus_6264#0 TATGCTGAGTCAGTAACCCCTGTTTACTGGCAGCAGCAGC-AGTGTATGGTAAGC-TGGA 895 consensus_6264#1 TATGCTGAGTCAGTAACCCCTGTTTACTGGCAGCAGCAGCCAGTGTATGGTAAGCCTGGA 170 **************************************** ************** **** consensus_6264#0 GTCTAATACTATCAGCATGTGGGTGTTGTAAGC-AGTTGCTGAACAAAATCAGTTAGGTG 954 consensus_6264#1 GTCTAATACTATCAGCATGTGGGTGTTGTAAGCCAGTTGCTGAACCAAATCAGTTAGGTG 230 ********************************* *********** ************** consensus_6264#0 GAAATTTTGTACACTTACTGAATAC-TCGTGTCAGAGTTCAGATAACTTTCTTGTAGAAT 1013 consensus_6264#1 GAAATTTTGTACACTTACTGAATACCTCGTGTCAGAGTTCAGATAACTTTCTTGTAGAAT 290 ************************* ********************************** consensus_6264#0 TTTGTATCTTCTACTACTGCCCATTCAACTTAAACGTCGAAATAATCTATGCTTGCCAGG 1073 consensus_6264#1 TTTGTATCTTCT------------------------------------------------ 302 ************ consensus_6264#0 ATACGTGGTAATGTGCTACGGAGCTATGCC 1103 consensus_6264#1 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||