These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6266#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1320 fasta sequence [ACAAACAGACCGCACAACCCGACGGCGCAGACGCCACGCCGGGGGGCGCCGCCGCCGCCGCCGCCGCCGCCAACGCGACGAACCGCGGGTACAAGAAGGCAGGGAAGCCGAGACGAGGGGCTCCAATGGCGCTCCGCCGCGTGCTCCTCTTCGTCAAGCCCTTCGACGTCTACCCTCCCCGCCCGCTCGCCGCCGCCGCCTCCTCGCCTCCGCCCCCGCCGCCGCCGCTGCGTGTATCCAATCCCAAGGTCTTGAATTATCTGGATGATAGGTGCAGAGTTCACAAGGAAACAATCAATCTCTGCAAAAGCGTACTGCAGCGTAAATCCATTGACTGGATTTCAGTGCAGCGAAATGATATGTCTAATCCAATACATGATGTGGATCTTGTGATTTCTGTTGGTGGTGATGGCACTCTTCTACGGGCTAGCCATTTTTTGAATAGCTCAATTCCCGTTTTAGGTGTTAATTCAGACCCTACTTGTCCTGATGAGGTTGATGAATTAACTGATGAATTTGATGCAAGGAGAAGCACAGGACATCTTTGTGCAGCTACGGCTGCAAACTTTGAGCAGATACTTGATGCAACCCTTGATGGTAGTAGGCAACCTTCAGAGTTGTCAAGGATCTCAGTGAAACTAAATGGACTTCAGCTACCAACTTATGCTCTGAATGATATATTGGTCTCACACCCCTGTCCAGCAAGTGTATCACGATTCTCATTTAGGAAGAGAAGCAACACTGGAGAGAGCTCGCATTTAATTAATTGCAGGTCAAGTGGTCTCAGGGTTGCAACGCCTGCTGGATCAACTGCTGCTATGCTATCGGCAGGAGGATTCGTGATGCCAATATCAAGCCATGAGCTTCAGTATATGATAAGGGAGCCCATTTCTCCAAGGGATGCTGACAAGCCACTGCTGCATGGGTTAGTTAAGCAAGGTCAACACATACTTGTCGTTTGGTACAATGAGGAAGGCGCTGTTTATTTTGATGGTTCACATGTAATGCATTCAATTCAGCATGGAGATACACTGGAGATCTCCTCTGATGCTCCAATCTTGAAAGTTATTTTGCCAGAAAATCTGTTAAAGCAGGGATCTTAGTAATGCAATAACATTATCATCGTTATTGTGCTTGTTAATATGGTATGATGTTTGACACTTGAGTTTCTGAGAACTGTCTGATATAGATGCGTATTTATGTAATGACAGAGTTAACTTATGCTATGAAATAAAATAGTGGATGCTAATTTTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK073719 [ AAACAGACCGCACAACCCGACGGCGCAGACGCCACGCCGGGGGGCGCCGCCGCCGCCGCCGCCGCCGCCAACGCGACGAACCGCGGGTACAAGAAGGCAGGGAAGCCGAGACGAGGGGCTCCAATGGCGCTCCGCCGCGTGCTCCTCTTCGTCAAGCCCTTCGACGTCTACCCTCCCCGCCCGCTCGCCGCCGCCGCCTCCTCGCCTCCGCCCCCGCCGCCGCCGCTGCGTGTATCCAATCCCAAGGTCTTGAATTATCTGGATGATAGGTGCAGAGTTCACAAGGAAACAATCAATCTCTGCAAAAGCGTACTGCAGCGTAAATCCATTGACTGGATTTCAGTGCAGCGAAATGATATGTCTAATCCAATACATGATGTGGATCTTGTGATTTCTGTTGGTGGTGATGGCACTCTTCTACGGGCTAGCCATTTTTTGAATAGCTCAATTCCCGTTTTAGGTGTTAATTCAGACCCTACTTGTCCTGATGAGGTTGATGAATTAACTGATGAATTTGATGCAAGGAGAAGCACAGGACATCTTTGTGCAGCTACGGCTGCAAACTTTGAGCAGATACTTGATGCAACCCTTGATGGTAGTAGGCAACCTTCAGAGTTGTCAAGGATCTCAGTGAAACTAAATGGACTTCAGCTACCAACTTATGCTCTGAATGATATATTGGTCTCACACCCCTGTCCAGCAAGTGTATCACGATTCTCATTTAGGAAGAGAAGCAACACTGGAGAGAGCTCGCATTTAATTAATTGCAGGTCAAGTGGTCTCAGGGTTGCAACGCCTGCTGGATCAACTGCTGCTATGCTATCGGCAGGAGGATTCGTGATGCCAATATCAAGCCATGAGCTTCAGTATATGATAAGGGAGCCCATTTCTCCAAGGGATGCTGACAAGCCACTGCTGCATGGGTTAGTTAAGCAAGGTCAACACATACTTGTCGTTTGGTACAATGAGGAAGGCGCTGTTTATTTTGATGGTTCACATGTAATGCATTCAATTCAGCATGGAGATACACTGGAGATCTCCTCTGATGCTCCAATCTTGAAAGTTATTTTGCCAGAAAATCTGTTAAAGCAGGGATCTTAGTAATGCAATAACATTATCATCGTTATTGTGCTTGTTAATATGGTATGATGTTTGACACTTGAGTTTCTGAGAACTGTCTGATATAGATGCGTATTTATGTAATGACAGAGTTAACTTATGCTATGAAATAAAATAGTGGATGC ] [+] EMBL BP185052 [acgaggAGACCGCACAACCCGACGGCGCAGACGCCACGCCGGGGGGCGCCGCCGCCGCCGCCGCCGCCGCCAACGCGACGAACCGCGGGTACAAGAAGGCAGGGAAGCCGAGACGAGGGGCTCCAATGGCGCTCCGCCGCGTGCTCCTCTTCGTCAAGCCCTTCGACGTCTACCCTCCCCGCCCGCTCGCCGCCGCCGCCTCCTCGCCTCCGCCCCCGCCGCCGCCGCTGCGTGTATCCAATCCCAAGGTCTTGAATTATCTGGATGATAGGTGCAGAGTTCACAAGGAAACAATCAATCTCTGCAAAAGCGTACTGCAGCGTAAATCCATTGACTGGATTTCAGTGCAGCGAAATGATATGTCTAATCCAATACATGATGTGGATCTTGTGATTTCTGTTGGTGGTGATGGCACTCTTCTACGGGCTAGCCATTTTTTGAATAGCTCAATTCCCGTTTTAGGTGTTAATTCAGACCCTACTTGTCCTGATGAGGTTGATGAATTAACTGATGAATTTGATGCAAGGAGAAGCACAGGACATCTTTGTGCAGCTACGGCTGCAAACTTTGAGCAGATACTTGATGCACCCCTTGATGGTAGTAGGCAACCTTCAGAGTTGTCAAGGATCTCAGTGAAACTAAATGGACTTCAGCTACCAACTTATG ] [+] EMBL CF320309 [ GCTTGTTAATATGGTATGATGTTTGACACTTGAGTTTCTGAGAACTGTCTGATATAGATGCGTATTTATGTAATGACAGAGTTAACTTATGCTATGAAATAAAATAGTGGATGCTAATTTTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_6266#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence [TCCTGATGAGGTTAGTTCTTCAGATTATTGTCAAGAACCATATGATCCATGTTTGTCAAGTTGCTTTTGGCATGCTTCCAAGCAGACTGATGCTTACCTGTATGCTTGGTTAGGTTTATATATAGATTATTCCTTTGCAGGTTGATGAATTAACTGATGAATTTGATGCAAGGAGAAGCACAGGACATCTTTGTGCAGCTACGGCTGCAAACTTTGAGCAGATACTTGATGCAACCCTTGATGGTAGTAGGCAACCTTCAGAGTTGTCAAGGATCTCAGTGAAACTAAATGGACTTCAGCTACCAACTTATGCTCTGAATGATATATTGGTCTCACACCCCTGTCCAGCAAGTGTATCACGATTCTCATTTAGGAAGAGAAGCAACACTGGAGAGAGCTCGCATTTAATTAATTGCAGGTCAAGTGGTCTCAGGGTTGCAACGCCTGCTGGATCAACTGCTGCTATGCTATCGGCAGGAGGATTCGTGATGCCAATATCAAGCCATGAGCTTCAGTATATGATAAGGGAGCCCATTTCTCCAAGGGATGCTGA] [+] EMBL CF323256 [TCCTGATGAGGTTAGTTCTTCAGATTATTGTCAAGAACCATATGATCCATGTTTGTCAAGTTGCTTTTGGCATGCTTCCAAGCAGACTGATGCTTACCTGTATGCTTGGTTAGGTTTATATATAGATTATTCCTTTGCAGGTTGATGAATTAACTGATGAATTTGATGCAAGGAGAAGCACAGGACATCTTTGTGCAGCTACGGCTGCAAACTTTGAGCAGATACTTGATGCAACCCTTGATGGTAGTAGGCAACCTTCAGAGTTGTCAAGGATCTCAGTGAAACTAAATGGACTTCAGCTACCAACTTATGCTCTGAATGATATATTGGTCTCACACCCCTGTCCAGCAAGTGTATCACGATTCTCATTTAGGAAGAGAAGCAACACTGGAGAGAGCTCGCATTTAATTAATTGCAGGTCAAGTGGTCTCAGGGTTGCAACGCCTGCTGGATCAACTGCTGCTATGCTATCGGCAGGAGGATTCGTGATGCCAATATCAAGCCATGAGCTTCAGTATATGATAAGGGAGCCCATTTCTCCAAGGGATGCTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6266#0 ACAAACAGACCGCACAACCCGACGGCGCAGACGCCACGCCGGGGGGCGCCGCCGCCGCCG 60 consensus_6266#1 ------------------------------------------------------------ consensus_6266#0 CCGCCGCCGCCAACGCGACGAACCGCGGGTACAAGAAGGCAGGGAAGCCGAGACGAGGGG 120 consensus_6266#1 ------------------------------------------------------------ consensus_6266#0 CTCCAATGGCGCTCCGCCGCGTGCTCCTCTTCGTCAAGCCCTTCGACGTCTACCCTCCCC 180 consensus_6266#1 ------------------------------------------------------------ consensus_6266#0 GCCCGCTCGCCGCCGCCGCCTCCTCGCCTCCGCCCCCGCCGCCGCCGCTGCGTGTATCCA 240 consensus_6266#1 ------------------------------------------------------------ consensus_6266#0 ATCCCAAGGTCTTGAATTATCTGGATGATAGGTGCAGAGTTCACAAGGAAACAATCAATC 300 consensus_6266#1 ------------------------------------------------------------ consensus_6266#0 TCTGCAAAAGCGTACTGCAGCGTAAATCCATTGACTGGATTTCAGTGCAGCGAAATGATA 360 consensus_6266#1 -------------------------------------------------TCCTGATGAGG 11 * **** consensus_6266#0 TGTCTAATCCAATACATGAT-GTGGATCTTGTGATTTCTGTTGGTGGTGATGGCACTCTT 419 consensus_6266#1 TTAGTTCTTCAGATTATTGTCAAGAACCATATGATCCATGTTTGTCAAGTTGCTTTTGGC 71 * * * ** ** * * * * * **** **** ** * ** * consensus_6266#0 CTACGGGCTAGCCATTTTTTGAATAGCTCAATTCCCGTTTTAGGTGTTAATTCAGACCCT 479 consensus_6266#1 ATGCTTCCAAGCAGACTGATGCTTACCTGTATGCTTGGTT-AGGTTTATATATAGATTAT 130 * * * *** * ** ** ** ** * * ** **** * ** *** * consensus_6266#0 ACTTGTCCTGATGAGGTTGATGAATTAACTGATGAATTTGATGCAAGGAGAAGCACAGGA 539 consensus_6266#1 TCCTTTGC-----AGGTTGATGAATTAACTGATGAATTTGATGCAAGGAGAAGCACAGGA 185 * * * * *********************************************** consensus_6266#0 CATCTTTGTGCAGCTACGGCTGCAAACTTTGAGCAGATACTTGATGCAACCCTTGATGGT 599 consensus_6266#1 CATCTTTGTGCAGCTACGGCTGCAAACTTTGAGCAGATACTTGATGCAACCCTTGATGGT 245 ************************************************************ consensus_6266#0 AGTAGGCAACCTTCAGAGTTGTCAAGGATCTCAGTGAAACTAAATGGACTTCAGCTACCA 659 consensus_6266#1 AGTAGGCAACCTTCAGAGTTGTCAAGGATCTCAGTGAAACTAAATGGACTTCAGCTACCA 305 ************************************************************ consensus_6266#0 ACTTATGCTCTGAATGATATATTGGTCTCACACCCCTGTCCAGCAAGTGTATCACGATTC 719 consensus_6266#1 ACTTATGCTCTGAATGATATATTGGTCTCACACCCCTGTCCAGCAAGTGTATCACGATTC 365 ************************************************************ consensus_6266#0 TCATTTAGGAAGAGAAGCAACACTGGAGAGAGCTCGCATTTAATTAATTGCAGGTCAAGT 779 consensus_6266#1 TCATTTAGGAAGAGAAGCAACACTGGAGAGAGCTCGCATTTAATTAATTGCAGGTCAAGT 425 ************************************************************ consensus_6266#0 GGTCTCAGGGTTGCAACGCCTGCTGGATCAACTGCTGCTATGCTATCGGCAGGAGGATTC 839 consensus_6266#1 GGTCTCAGGGTTGCAACGCCTGCTGGATCAACTGCTGCTATGCTATCGGCAGGAGGATTC 485 ************************************************************ consensus_6266#0 GTGATGCCAATATCAAGCCATGAGCTTCAGTATATGATAAGGGAGCCCATTTCTCCAAGG 899 consensus_6266#1 GTGATGCCAATATCAAGCCATGAGCTTCAGTATATGATAAGGGAGCCCATTTCTCCAAGG 545 ************************************************************ consensus_6266#0 GATGCTGACAAGCCACTGCTGCATGGGTTAGTTAAGCAAGGTCAACACATACTTGTCGTT 959 consensus_6266#1 GATGCTGA---------------------------------------------------- 553 ******** consensus_6266#0 TGGTACAATGAGGAAGGCGCTGTTTATTTTGATGGTTCACATGTAATGCATTCAATTCAG 1019 consensus_6266#1 ------------------------------------------------------------ consensus_6266#0 CATGGAGATACACTGGAGATCTCCTCTGATGCTCCAATCTTGAAAGTTATTTTGCCAGAA 1079 consensus_6266#1 ------------------------------------------------------------ consensus_6266#0 AATCTGTTAAAGCAGGGATCTTAGTAATGCAATAACATTATCATCGTTATTGTGCTTGTT 1139 consensus_6266#1 ------------------------------------------------------------ consensus_6266#0 AATATGGTATGATGTTTGACACTTGAGTTTCTGAGAACTGTCTGATATAGATGCGTATTT 1199 consensus_6266#1 ------------------------------------------------------------ consensus_6266#0 ATGTAATGACAGAGTTAACTTATGCTATGAAATAAAATAGTGGATGCTAATTTTTGTAAA 1259 consensus_6266#1 ------------------------------------------------------------ consensus_6266#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1319 consensus_6266#1 ------------------------------------------------------------ consensus_6266#0 A 1320 consensus_6266#1 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||