cluster # 6267

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Oryza sativa
cluster # 6267 cluster # 6267 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6267#0 length = 1114 sequences # 3

consensus_6267#1 length = 384 sequences # 1

consensusID : consensus_6267#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1114
fasta sequence

                              [TTTTTTTTTTTAACAAACGTTGTTTGCCAATATATATATATATATAATATAATTATATATCCATTCACTAGCAAAGCAGGAGCAACGCCATCAGTCCCAGACAGCCCAGGCTCAGAGTAAAAAAAAAATCAGAAGATCACGATACTGGCGTATCAGCTACTACTATCTGCTATGGTAGCCAGCCGTCATGTGACACCACCACTGCCCAAGACATTTTCTGTGGCCTATCACCTGTACAACTAATCTGCGCGTTACTTATGCGTGCAGATTACCAGCAAAAACAAAACCCGTAATTAGTAGTATTGGATGCTCCCGCTCAGTAATAAAAGGTTCCTTCCTTCCTTCCGTATGTCTACCTATGATCCTTTCTCCTTTGTCGTACTAGTATGCTACGAGCTACTACTAACTAACACTGATGACAGTACTTGGCAACAAGGAGTTGCTGAAGATTAGTGGAATCTAATGCGCTTCTTCCTGGGAGTGTCATGAACTTGTGTCTTCTCACCATACATCCTCAGTTGTAGGTTCTCGAAGGCTTCTGACACCGCTTCAACCAGCTCGTGCTTCTTGGCGTAGACCCGGACAATTCTGTCCTGGTTGTACGCAGGTAGCAGGTGGCTGACCCGCTCATCTGTGATGGGGAACTTCTCATCGCAACCAAAATCCTTAAAGAACTTGATGCTTTCAAGGGGATTATCTTTTCCACGGGTCAAATCAATCTTAACATTGCTAACAGCAACATCTTCTTCCTTCAGCAGCACCTTGGAAGATTTCTGTGAACAAACTATGTCTTGTGCGGTTATATTCTTAAAGTGCTCCAGCTTGTCCTTTGGAAC-AGAATATTCATTGCAGAACTTATAGAGCTCTCTTCGGCGAATACGTTGAATGATCCCTTTTGCTTTGTTCAGTTCATCGTTGGGAGCAGTTTCAATGCTTTTAATGATCGTGTCATCTNACTTCCAGAAGTCCGCTGGATCTTGTGCATGCAAAGCTATTCCCAAGTATTCGTTAGCCTCAACAAGTGCATCCACAAGCATCAGTTCAACAGCCTTNACTTTCGCATGTGTATAGACAGTGCGGTGAAGATCAGCACGTGTCGTAAACAATTTATGGA]

[+] EMBL CF325787             [TTTTTTTTTTTAACAAACGTTGTTTGCCAATATATATATATATATAATATAATTATATATCCATTCACTAGCAAAGCAGGAGCAACGCCATCAGTCCCAGACAGCCCAGGCTCAGAGTAAAAAAAAAATCAGAAGATCACGATACTGGCGTATCAGCTACTACTATCTGCTATGGTAGCCAGCCGTCATGTGACACCACCACTGCCCAAGACATTTTCTGTGGCCTATCACCTGTACAACTAATCTGCGCGTTACTTATGCGTGCAGATTACCAGCAAAAACAAAACCCGTAATTAGTAGTATTGGATGCTCCCGCTCAGTAATAAAAGGTTCCTTCCTTCCTTCCGTATGTCTACCTATGATCCTTTCTCCTTTGTCGTACTAGTATGCTACGAGCTACTACTAACTAACACTGATGACAGTACTTGGCAACAAGGAGTTGCTGAAGATTAGTGGAATCTAATGCGCTTCTTCCTGGGAGTGTCATGAACTTGTGTCTTCTCACCATACATCCTCAGTTGTAGGTTCTCGAAGGCTTCTGACACCGCTTCAACCAGCTCGTGCTTCTTGGCGTAGACCCGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CF323282             [                                                                                                                                                                                                                                                                                                                                                                                                 TATGCTACGAGCTACTACTAACTAACACTGATGACAGTACTTGGCAACAAGGAGTTGCTGAAGATTAGTGGAATCTAATGCGCTTCTTCCTGGGAGTGTCATGAACTTGTGTCTTCTCACCATACATCCTCAGTTGTAGGTTCTCGAAGGCTTCTGACACCGCTTCAACCAGCTCGTGCTTCTTGGCGTAGACCCGGACAATTCTGTCCTGGTTGTACGCAGGTAGCAGGTGGCTGACCCGCTCATCTGTGATGGGGAACTTCTCATCGCAACCAAAATCCTTAAAGAACTTGATGCTTTCAAGGGGATTATCTTTTCCACGGGTCAAATCAATCTTAACATTGCTAACAGCAACATCTTCTTCCTTCAGCAGCACCTTGGAAGATTTCTGTGAACAAACTATGTCTTGTGCGGTTATATTCTTAAAGTGCTCCAGCTTGTCCTTTGGAAC AGAATATTCATTGCAGAACTTATAGAGCTCTCTTCGGCGAATACGTTGAATGATCCCTTTTGCTTTGTTCAGTTCATCGTTGGGAGCAGTTTCAATGCTTTTAATGATCGTG                                                                                                                                                                      ]
[-] EMBL D43345               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     nCTTAAAGTGCCCCAGCNTGNCCTTTGGAACAAGAATATTCATTGCAGAACTTATAGAGCTCTCTTCGGCGAATACGTTGAATGATCCCNTTTGCTTTGTTCAGTTCANCGTTGGGAGCAGTTTCAATGCTTTTAATGATCGTGTCATCTNACTTCCAGAAGTCCGCTGGATCTTGTGCATGCAAAGCTATTCCCAAGTATTCGTTAGCCTCAACAAGTGCATCCACAAGCATCAGTTCAACAGCCTTNACTTTCGCATGTGTATAGACAGTGCGGTGAAGATCAGCACGTGTCGTAAACAATTTATGGA]




>consensus_6267#0
TTTTTTTTTTTAACAAACGTTGTTTGCCAATATATATATATATATAATATAATTATATAT
CCATTCACTAGCAAAGCAGGAGCAACGCCATCAGTCCCAGACAGCCCAGGCTCAGAGTAA
AAAAAAAATCAGAAGATCACGATACTGGCGTATCAGCTACTACTATCTGCTATGGTAGCC
AGCCGTCATGTGACACCACCACTGCCCAAGACATTTTCTGTGGCCTATCACCTGTACAAC
TAATCTGCGCGTTACTTATGCGTGCAGATTACCAGCAAAAACAAAACCCGTAATTAGTAG
TATTGGATGCTCCCGCTCAGTAATAAAAGGTTCCTTCCTTCCTTCCGTATGTCTACCTAT
GATCCTTTCTCCTTTGTCGTACTAGTATGCTACGAGCTACTACTAACTAACACTGATGAC
AGTACTTGGCAACAAGGAGTTGCTGAAGATTAGTGGAATCTAATGCGCTTCTTCCTGGGA
GTGTCATGAACTTGTGTCTTCTCACCATACATCCTCAGTTGTAGGTTCTCGAAGGCTTCT
GACACCGCTTCAACCAGCTCGTGCTTCTTGGCGTAGACCCGGACAATTCTGTCCTGGTTG
TACGCAGGTAGCAGGTGGCTGACCCGCTCATCTGTGATGGGGAACTTCTCATCGCAACCA
AAATCCTTAAAGAACTTGATGCTTTCAAGGGGATTATCTTTTCCACGGGTCAAATCAATC
TTAACATTGCTAACAGCAACATCTTCTTCCTTCAGCAGCACCTTGGAAGATTTCTGTGAA
CAAACTATGTCTTGTGCGGTTATATTCTTAAAGTGCTCCAGCTTGTCCTTTGGAACAGAA
TATTCATTGCAGAACTTATAGAGCTCTCTTCGGCGAATACGTTGAATGATCCCTTTTGCT
TTGTTCAGTTCATCGTTGGGAGCAGTTTCAATGCTTTTAATGATCGTGTCATCTNACTTC
CAGAAGTCCGCTGGATCTTGTGCATGCAAAGCTATTCCCAAGTATTCGTTAGCCTCAACA
AGTGCATCCACAAGCATCAGTTCAACAGCCTTNACTTTCGCATGTGTATAGACAGTGCGG
TGAAGATCAGCACGTGTCGTAAACAATTTATGGA

consensusID : consensus_6267#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 384
fasta sequence

                              [ACCCCGGACAATTCTGTCCTGGTTGTACGCAGGTAGCAGGTGGCTGACCCGCTCCATCTGTGATGGGGAACTTCTCATCGGCAACCAAAATCCTTAAAGAACTTGATGCTGGGGATAGTAGATATGCAGACCAACAAAAGTAACAGGTCAGAATCTGATATGTCGCCCTAAGAAATATAAGAGTCTGAAAAGTGGGTTTATAAATCAAAAACCTTTCAAGGGGATTATCTTTTCCACGGGTCAAATCAATCTTAACATTGCTAACAGCAACATCTTCTTCCTTCAGCAGCACCTTGGAAGATTTCTGTGAACAAACTATGTCTTGTGCGGTTATATTCTTAAAGTGCTCCAGCTTGTCCTTTGGAACAGAATATTCATTGCAGA]

[-] EMBL OSC29031             [ACCCCGGACAATTCTGTCCTGGTTGTACGCAGGTAGCAGGTGGCTGACCCGCTCCATCTGTGATGGGGAACTTCTCATCGGCAACCAAAATCCTTAAAGAACTTGATGCTGGGGATAGTAGATATGCAGACCAACAAAAGTAACAGGTCAGAATCTGATATGTCGCCCTAAGAAATATAAGAGTCTGAAAAGTGGGTTTATAAATCAAAAACCTTTCAAGGGGATTATCTTTTCCACGGGTCAAATCAATCTTAACATTGCTAACAGCAACATCTTCTTCCTTCAGCAGCACCTTGGAAGATTTCTGTGAACAAACTATGTCTTGTGCGGTTATATTCTTAAAGTGCTCCAGCTTGTCCTTTGGAACAGAATATTCATTGCAGA]




>consensus_6267#1
ACCCCGGACAATTCTGTCCTGGTTGTACGCAGGTAGCAGGTGGCTGACCCGCTCCATCTG
TGATGGGGAACTTCTCATCGGCAACCAAAATCCTTAAAGAACTTGATGCTGGGGATAGTA
GATATGCAGACCAACAAAAGTAACAGGTCAGAATCTGATATGTCGCCCTAAGAAATATAA
GAGTCTGAAAAGTGGGTTTATAAATCAAAAACCTTTCAAGGGGATTATCTTTTCCACGGG
TCAAATCAATCTTAACATTGCTAACAGCAACATCTTCTTCCTTCAGCAGCACCTTGGAAG
ATTTCTGTGAACAAACTATGTCTTGTGCGGTTATATTCTTAAAGTGCTCCAGCTTGTCCT
TTGGAACAGAATATTCATTGCAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6267#0      TTTTTTTTTTTAACAAACGTTGTTTGCCAATATATATATATATATAATATAATTATATAT 60
consensus_6267#1      ------------------------------------------------------------
                                                                                  

consensus_6267#0      CCATTCACTAGCAAAGCAGGAGCAACGCCATCAGTCCCAGACAGCCCAGGCTCAGAGTAA 120
consensus_6267#1      ------------------------------------------------------------
                                                                                  

consensus_6267#0      AAAAAAAATCAGAAGATCACGATACTGGCGTATCAGCTACTACTATCTGCTATGGTAGCC 180
consensus_6267#1      ------------------------------------------------------------
                                                                                  

consensus_6267#0      AGCCGTCATGTGACACCACCACTGCCCAAGACATTTTCTGTGGCCTATCACCTGTACAAC 240
consensus_6267#1      ------------------------------------------------------------
                                                                                  

consensus_6267#0      TAATCTGCGCGTTACTTATGCGTGCAGATTACCAGCAAAAACAAAACCCGTAATTAGTAG 300
consensus_6267#1      ------------------------------------------------------------
                                                                                  

consensus_6267#0      TATTGGATGCTCCCGCTCAGTAATAAAAGGTTCCTTCCTTCCTTCCGTATGTCTACCTAT 360
consensus_6267#1      ------------------------------------------------------------
                                                                                  

consensus_6267#0      GATCCTTTCTCCTTTGTCGTACTAGTATGCTACGAGCTACTACTAACTAACACTGATGAC 420
consensus_6267#1      ------------------------------------------------------------
                                                                                  

consensus_6267#0      AGTACTTGGCAACAAGGAGTTGCTGAAGATTAGTGGAATCTAATGCGCTTCT-TCCTGGG 479
consensus_6267#1      -------------------------------------ACCCCGGACAATTCTGTCCTGGT 23
                                                           * *     *  **** ****** 

consensus_6267#0      AGTGT-CATG-AACTTGTGTCTTCTCACCATACATCCTCAGTTGTAGG-TTCTCGAAGGC 536
consensus_6267#1      TGTACGCAGGTAGCAGGTGGCTGACC-CGCTCCATCTGTGATGGGGAACTTCTCATCGGC 82
                       **   ** * * *  *** **   * *  * ****     * *     *****   ***

consensus_6267#0      TTCTGACACCGCTTCAACCAGCTCGTGCTTCTTGGCGTAGACCCGGACAATTCTGTCCTG 596
consensus_6267#1      AACCAAAATC--CTTAAAGAACT--TGATGCTGGGGATAG---TAGATA------TGCAG 129
                        *  * * *   * **  * **  ** * ** **  ***     ** *      * * *

consensus_6267#0      GTTGTACGCAGGTAGCAGGTGGCTGACCCGCTCATCTGTGATGGGGAACTTCTCATCGCA 656
consensus_6267#1      ACCA-ACAAAAGTAACAGGTCAG-AATCTGATATGTCGCCCTAAGAAATATAAGAGTCTG 187
                           **  * *** *****     * * * *     *   *  * **  *   *     

consensus_6267#0      ACCAAAATCCTTAAAGAACTTGATGCTTTCAAGGGGATTATCTTTTCCACGGGTCAAATC 716
consensus_6267#1      AAAAGTGGGTTTATAAATCAAAAACCTTTCAAGGGGATTATCTTTTCCACGGGTCAAATC 247
                      *  *      *** * * *   *  ***********************************

consensus_6267#0      AATCTTAACATTGCTAACAGCAACATCTTCTTCCTTCAGCAGCACCTTGGAAGATTTCTG 776
consensus_6267#1      AATCTTAACATTGCTAACAGCAACATCTTCTTCCTTCAGCAGCACCTTGGAAGATTTCTG 307
                      ************************************************************

consensus_6267#0      TGAACAAACTATGTCTTGTGCGGTTATATTCTTAAAGTGCTCCAGCTTGTCCTTTGGAAC 836
consensus_6267#1      TGAACAAACTATGTCTTGTGCGGTTATATTCTTAAAGTGCTCCAGCTTGTCCTTTGGAAC 367
                      ************************************************************

consensus_6267#0      AGAATATTCATTGCAGAACTTATAGAGCTCTCTTCGGCGAATACGTTGAATGATCCCTTT 896
consensus_6267#1      AGAATATTCATTGCAGA------------------------------------------- 384
                      *****************                                           

consensus_6267#0      TGCTTTGTTCAGTTCATCGTTGGGAGCAGTTTCAATGCTTTTAATGATCGTGTCATCTNA 956
consensus_6267#1      ------------------------------------------------------------
                                                                                  

consensus_6267#0      CTTCCAGAAGTCCGCTGGATCTTGTGCATGCAAAGCTATTCCCAAGTATTCGTTAGCCTC 1016
consensus_6267#1      ------------------------------------------------------------
                                                                                  

consensus_6267#0      AACAAGTGCATCCACAAGCATCAGTTCAACAGCCTTNACTTTCGCATGTGTATAGACAGT 1076
consensus_6267#1      ------------------------------------------------------------
                                                                                  

consensus_6267#0      GCGGTGAAGATCAGCACGTGTCGTAAACAATTTATGGA 1114
consensus_6267#1      --------------------------------------