These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6268#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 730 fasta sequence [TTTTGTCAGAACAGGTACAACTCAAACTCTAACAAGGAGAAACGCCGCTTTTACATACTGAATTTTTACATTCTAACAAACATCATAGCTAACAAACATCAGCATTAATCATACGATACAATAAGTTGCAGACCAACATTTCACAAATGACAATTGGAAATGTGTTCATGCTGATCCTCACAAAAGGCCCAAATACATAGATTTTGAAAAAGGTCTAAATATCATTTCATGGGAACAAATGCCAAGCAACACTGGTGTACTACAAAGAAACTGACTTAGCTCCTATTGGACAGTGTTTCTGCATAGAGTGGAACATAGGGAAGACACTCCAGTATACAATCTGACCCAAGAGCTTGAATAACACGTGACTCCTTATGATCCATGTCATATGCCATCAGCGTGTAGTCTCTAGTAATATAGTAAATCAAATTGCAATCCAGGTGAACTATGACCACATAGCAGAACTCGCTAGATTTGTACTTGGAGTTTATCTTCTCATACAGCATTTCGTTAGTCACACTATGCTTCAATGTCCACTCATCCTTCGAGTAGTCCTCAAGAAGCCATTATTGACAGGCTTATGGGGACAGTGTTGTATTGACTGAGGTAGTACAATTTCCCTTCGGATTGACAGATGGAACCTGGCAACCAATCACGCACTTCTTTTCAACCCTTTCCATTTTTCGGCACTTTTCGGTGNACGCCATGGTCCTCCTTTTCACATNTTACC] [+] EMBL CA998149 [TTTTGTCAGAACAGGTACAACTCAAACTCTAACAAGGAGAAACGCCGCTTTTACATACTGAATTTTTACATTCTAACAAACATCATAGCTAACAAACATCAGCATTAATCATACGATACAATAAGTTGCAGACCAACATTTCACAAATGACAATTGGAAATGTGTTCATGCTGATCCTCACAAAAGGCCCAAATACATAGATTTTGAAAAAGGTCTAAATATCATTTCATGGGAACAAATGCCAAGCAACACTGGTGTACTACAAAGAAACTGACTTAGCTCCTATTGGACAGTGTTTCTGCATAGAGTGGAACATAGGGAAGACACTCCAGTATACAATCTGACCCAAGAGCTTGAATAACACGTGACTCCTTATGATCCATGTCATATGCCATCAGCGTGTAGTCTCTAGTAATATAGTAAATCAAATTGCAATCCAGGTGAACTATGACCACATAGCAGAACTCGCTAGATTTGTACTTGGAGTTTATCTTCTCATACAGCATTTCGTTAGTCACACTATGCTTCAATGTCCACT ] [+] EMBL CA999250 [ ACAGGTACAACTCAAACTCTAACAAGGAGAAACGCCGCTTTTACATACTGAATTTTTACATTCTAACAAACATCATAGCTAACAAACATCAGCATTAATCATACGATACAATAAGTTGCAGACCAACATTTCACAAATGACAATTGGAAATGTGTTCATGCTGATCCTCACAAAAGGCCCAAATACATAGATTTTGAAAAAGGTCTAAATATCATTTCATGGGAACAAATGCCAAGCAACACTGGTGTACTACAAA ] [-] EMBL AU100981 [ ttTTTTTACATTCTAACAAACATCATAGCTAACAAACATCAGCATTAATCATACGATACAATAAGTTGCAGACCAACATTTCACAAATGACAATTGGAAATGTGTTCATGCTGATCCTCACAAAAGGCCCAAATACATAGATTTTGAAAAAGGTCTAAATATCATTTCATGGGAACAAATGCCAAGCAACACTGGTGTACTACAAAGAAACTGACTTAGCTCCTATTGGACAGTGTTTCTGCATAGAGTGGAACATAGGGAAGACACTCCAGTATACAATCTGACCCAAGAGCTTGAATAACACGTGACTCCTTATGATCCATGTCATATGCCATCAGCGTGTAGTCTCTAGTAATATAGTAAATCAAATTGCAATCCAGGTGAACTATGACCACATAGCAGAACTCGCTAGATTTGTACTTGGAGTTTATCTTCTCATACAGCAGTTCGTTAGTCACACTATGCTTCAATGTCCACTCATCCTTCGAGTAGTCCTCAAGAAGCCATTATTGACAGGCTTATGGGGACAGTGTTGTATTGACTGAGGTAGTACAATTTCCCTTCGGATTGACAGATGGAACCTGGCAACCAATCACGCACTTCTTTTCAACCCTTTCCATTTTTCGGCACTTTTCGGTGNACGCCATGGTCCTCCTTTTCACATNTTACC] consensusID : consensus_6268#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTATGCCCAAAAAAATGGATTCAATTTGGGTCAAAATGTCTGTTGAGCATATCCTTGGCAAAGCTGCCGTTGTTGTAACGATATATTCTGCCTCACAAGGGGATTAAAGGGCACCATTTTCTGCTTTTTGGACCACCAGCAAAAAGGGCCTGATACAGAAAAGGAACAAAATACCCAGGGGCTCTTCCAATCATCAACATCGCCAGCCATGTCCCTATCGCTGTAAACCAACGAGCTGAGGATCTCCATGCTCCTCGTAACGTTACCCATAGTTCAGAGTCCCTGCTACATACCTGAAAAGATCCATGACTGACTGAAGCTAAGGTGCTCTTCTGTTCCTTATGAATGCACGCAGTTGCCATTCCTCAGCTTGAGGCTCAAAGTGCACCCCAAGAGCTTGAATAACACGTGACTCCTTATGATCCATGTCATATGCCATCAGCGCGGACCCTCTAGTAATATATGAAATCAAATTGCAGTCCAGGTGAACTATGACCCCATAGCAGCACTTCGGTAGATTTGGACTTGGAGGTTATCTTCCTCTACCCCAAGTCGTTGGGCACACTATGCCTTCACGGGCCACTCATCCTTTGAGGAGGCCTCAAGAACGCATACTGACAGGCTTTTCGGGGACAGGGGTGGATTGGCCAAGGCATGACAATTT] [+] EMBL CA762728 [TTTTTTTTTTTTTTTTTTTTTTTTATGCCCAAAAAAATGGATTCAATTTGGGTCAAAATGTCTGTTGAGCATATCCTTGGCAAAGCTGCCGTTGTTGTAACGATATATTCTGCCTCACAAGGGGATTAAAGGGCACCATTTTCTGCTTTTTGGACCACCAGCAAAAAGGGCCTGATACAGAAAAGGAACAAAATACCCAGGGGCTCTTCCAATCATCAACATCGCCAGCCATGTCCCTATCGCTGTAAACCAACGAGCTGAGGATCTCCATGCTCCTCGTAACGTTACCCATAGTTCAGAGTCCCTGCTACATACCTGAAAAGATCCATGACTGACTGAAGCTAAGGTGCTCTTCTGTTCCTTATGAATGCACGCAGTTGCCATTCCTCAGCTTGAGGCTCAAAGTGCACCCCAAGAGCTTGAATAACACGTGACTCCTTATGATCCATGTCATATGCCATCAGCGCGGACCCTCTAGTAATATATGAAATCAAATTGCAGTCCAGGTGAACTATGACCCCATAGCAGCACTTCGGTAGATTTGGACTTGGAGGTTATCTTCCTCTACCCCAAGTCGTTGGGCACACTATGCCTTCACGGGCCACTCATCCTTTGAGGAGGCCTCAAGAACGCATACTGACAGGCTTTTCGGGGACAGGGGTGGATTGGCCAAGGCATGACAATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6268#0 -----------------------------------------------TTTTGTCAGAACA 13 consensus_6268#1 TTTTTTTTTTTTTTTTTTTTTTTTATGCCCAAAAAAATGGATTCAATTTGGGTCAAAATG 60 ** **** ** consensus_6268#0 GGTACAACTCAAACTCTAACAAGGAGAAACGCCGCTTTTACATACTGAATTTTTACATTC 73 consensus_6268#1 TCTGTTGAGCATATCCT---TGGCAAAGCTGCCGTTGTTGTA-ACGATATATTCTGCCTC 116 * ** * ** * * * **** * ** * ** ** ** ** consensus_6268#0 TAACAAACATCATAGCTAACAAACATCAGCATT---AATCATACGATACAATAAGTTGCA 130 consensus_6268#1 ACAAGGGGATTAAAGGGCACCATTTTCTGCTTTTTGGACCAC-CAGCAAAAAGGGCCTGA 175 * ** * ** ** * ** ** ** * ** * * ** * * consensus_6268#0 GACCAACATTTCACAAATGACAATTGGAAATGTGT--TCATGCTGATCCTCACAAAAGGC 188 consensus_6268#1 TACAGAAAAGGAACAAAATACCCAGGGGCTCTTCCAATCATCAACATCGCCAGCCATGTC 235 ** * * ***** ** ** * **** *** ** * * * consensus_6268#0 CCAAATAC-ATAGATTTTGAAA---AAGGTCTAAATATCATT--TCATGGGAACAAATGC 242 consensus_6268#1 CCTATCGCTGTAAACCAACGAGCTGAGGATCTCCATGCTCCTCGTAACGTTACCCATAGT 295 ** * * ** * * * * *** ** * * * * * * * * consensus_6268#0 CAAGCAACACTGGTGTA---CTACAAAGAAACTGACTTAGCTCCTATTGGACAGTGTTTC 299 consensus_6268#1 TCAGAGTCCCTGCTACATACCTGAAAAGATCCATGACTGACTGAAGCTAAGGTGCTCTTC 355 ** * *** * * ** ***** * * ** * * *** consensus_6268#0 TGCATAGAGTGGA-ACATAGGGAAGACACTCC---------AGTATACAATCTGACCCAA 349 consensus_6268#1 TGTTCCTTATGAATGCACGCAGTTGCCATTCCTCAGCTTGAGGCTCAAAGTGCACCCCAA 415 ** ** * ** * * ** *** * * * * ***** consensus_6268#0 GAGCTTGAATAACACGTGACTCCTTATGATCCATGTCATATGCCATCAGCGTGTAGTCTC 409 consensus_6268#1 GAGCTTGAATAACACGTGACTCCTTATGATCCATGTCATATGCCATCAGCGCGGACCCTC 475 *************************************************** * * *** consensus_6268#0 TAGTAATATAGTAAATCAAATTGCAATCCAGGTGAACTATGACCACATAGCAGAACT-CG 468 consensus_6268#1 TAGTAATATATGAAATCAAATTGCAGTCCAGGTGAACTATGACCCCATAGCAGCACTTCG 535 ********** ************* ****************** ******** *** ** consensus_6268#0 CTAGATTTGTACTTGGAGTTTATCTTCTCATACAGCATTTCGTTAGTCACACTATGC-TT 527 consensus_6268#1 GTAGATTTGGACTTGGAGGTTATCTTCCTCTACCCCAAGTCGTTGGGCACACTATGCCTT 595 ******** ******** ******** *** ** ***** * ********** ** consensus_6268#0 CAATGTCCACTCATCCTTCGAGTAGTCCTCAAGAAGCCATTATTGACAGGCTTAT-GGGG 586 consensus_6268#1 CACGGGCCACTCATCCTTTGAGGAGGCCTCAAGAACGCAT-ACTGACAGGCTTTTCGGGG 654 ** * ************ *** ** ********* *** * ********** * **** consensus_6268#0 ACAGTGTTGTATTGACTGAGGTAGTACAATTTCCCTTCGGATTGACAGATGGAACCTGGC 646 consensus_6268#1 ACAGGGGTGGATTGGCCAAGGCATGACAATTT---------------------------- 686 **** * ** **** * *** * ******* consensus_6268#0 AACCAATCACGCACTTCTTTTCAACCCTTTCCATTTTTCGGCACTTTTCGGTGNACGCCA 706 consensus_6268#1 ------------------------------------------------------------ consensus_6268#0 TGGTCCTCCTTTTCACATNTTACC 730 consensus_6268#1 ------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||