Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6273 cluster # 6273       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6273#0 length = 2964 sequences # 2  
consensus_6273#1 length = 770 sequences # 1  
consensus_6273#2 length = 253 sequences # 1  

consensusID : consensus_6273#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2964
fasta sequence
                              [GTGGGCCGCGTCCATCGCACTGGTCCACTCGCCTCTCCCCTCCCCCCTCCATTCCGCTCCGATTTACCGCCTCGCCGGCCGCCGCAGTAGGCGGCGCTACGGTTATTTCGGTTAGGGTTCCGGCGAGGCCAACGCCCACCCCCCACCTCCACCTCCACCTCCCCCAGAGCGAGCCGCCGCCGCCTGTGGAGGGCCAGGGAGAGATGGTTTTCGTGTGGCTCACCGCGTTCTTCCTCGTCGTGGCGCTCATCGTGCTCGTCATCTACCAGCTGATGTGCTTGGCAGATCTGGAGTTTGACTATATCAATCCATTCGATTCATCCTCCCGGATAAATAAAGTGGTTATTCCAGAATTCGTATTGCAAGCAGCTCTAAGTGTATTATTCCTCCTATCGGGGCATTGGGCAATGTTCTTACTTTCTGCCCCGATGGTGTACTATAACTATACGCTGTAAGTGCTGCTGTCTTCTATCCGCCTTTCAGTCTTTAAAACATTTTATAGTGCAAAATGGACCAAATGAAAAGTCCGGGACTGCTGTCTTCTTTGTCCTAAGTTATTATTTTGCCATGACTAGTATAAACAGATGAACTGAAAGTTAGAAATGGTACAGTCATTCATGTCTATTATGTGAGAACCAAAACAATAATTTGAAAATGGAAATGGGTGTTCAAGGTTGAGATACCTTTTATAAAGCTGTTTAGGCTGTTTGTTCAGAAAATTTTAGATTAAAATGGTCAGTGAAGTTCTTGGTCTCCTTCAGAAAACAAGTTTTGTACTTTACACATAATATGGTATATGACCTACTTTTGCATTGCCCTGATTTCTGACTTTTGATATACCTTAATACTGCACACGTCTGGATCTTTATTAGTGTAACTTACTAGACATCCTTCTAATATCTTACTGTATTTTCTTATCTGCATTCAGGAAGCACTAAGTTCTGATATGTGTGTCAGGCATGCTTGTTTTGGACCATGATTTTACTTTATTTGATAACTCTGAATTTCTATGTAGCTTTTTTGTGCCTCTTGTTGTACTAAGTTTTATAGGGTAAGTGGTCTTATGATCGATAATATAGGTGTATAACTTCTTATATCTTATATTTGAACAAATGAAGGGATAATGCTGGCTCCTGCATGCAGTATCTACAAGAATGCCTGAAAACTGAAAAGTAGTTCCTACAAACATCTGCAAAACCATCATATTTCATAGTCCTATAG-AAAGCACAATCTATATACCCTTCCTAACTTTGTGAATATCTTTTCTTAGCCAACCCTTTTCCTCTTTGACGAAAAACAGCAGGAGAGGCAGAGGCTCCTACTGTGCTATATATATTAGATTAGATAAAAGAAAGTTATTTACAAAAAAAAAAACAAAGAAGAAGAGGGAATTTACAAAGCAGATGCTATGCTAAATTCTTAGACGACCTGTATATTGATGCTTGGGACCCCATGTACTAGTATGGTGAGATTATTCAGTCTCGTGCTGTTTAATGTTTGTCCCAGATGAATTAATTCCTTCCCACCCACCCGGACCCATGTTCGTTGCATGTTTTCCATGCTATGGTGTTGCTTGTGGTTGATGATGTAGTGATGAAATCACGAAATTTGACTGTTATTGGTGTGTTCGTGATAAAAAACAACAACATGGGACTGAGAGAACTAGGGTGGATCTAATAGCATACAGTCAGATTTAACCATGTCAGGGAGCTACTGAGAAACTAAATATTGTAATTTTCCTGTAAGCATATTGGTGTAGTATGTGACATCATGGTTAAAGATTCTTGCCTGATTTTAGGTTGGTTTTGAATTGAGGTCTTAGAAGTTAGAATCACTTAGAAGGTAATGGGTAAATATGGTTTTAGAAGGCAGCATATTGCTCAACTTTTGTTGTTAACTATTATTTGATTATCCAGGAATGCAAATCTTTAATTCCAACCAATCAACATATATGTTATCATGTTCAATATCGGATGTAAACAGCATGCGCTATTAATGGAACAGATGTGAACATGCTGGTGTCAGAGTATCAGCACTATAGCGAGATATGGCTGTATCACAAAAGTGCAAATTTCAAGGGCTTGAACTTTGTCAGTGTATTGTATATTTCCATTAGAACTGTAGTCAGATCATCCCTTGTCACTTAGTTTTTTCCTTTTGAAGAAAGAAACATGACTGAAACATGAGTTAAGGTTCCCAGAACTGTCACCATTCTATAGAGCTAGGTTTAGCAGTTTTTTTTCAGAAAGAAACATGAGTGATAAACTTGAGCTAAGGTTCCCTGAACTGTCACCACTCTATAGGTCTAGGTTTTCTGTTGATGATTTTATACTTGTCTGCTACTTAAAAGAAATCAAAAACAGTTTGTCGACTTGACTGGGAACATTTTTATGGTCTTTGCATGCTGCAGGTACCAGCGACGACAACATCTTGTAGATGTAACAGAAATATTTAATCATCTTGGCCGGGAGAAGAAACGCCGCCTTTTTAAGATAGTTGGTCTCATTATTCTCCTATTCTTGTCCTTGTTTTGGATGATCTGGACTGTATTATTGGAGGAGGATGAGTAGAATGAAAAAAAAAACACTATGGTAGCTCATATTGGCGTTCCAAGTTCCAACCATTAGTTAGGTATTACTACAACATTATCCTCATTGCATGCTGAACACCCTGTTGCAGTCCTATTAATCGATACCAAAATTGTTTTCGTCAAATGCAGGTCATCTGGAGAAGCAAGACAAGTGAAAAACATTGTGCCCCAAAAGTATTGTTGGCTTGTGGAGCTGTTTTTTCTCCGATTTATAGTGAAGCTCCTATTATTGTCGCATGTAACATGTAAATTAGGAGCTACTGGGCATCAGTTCTCGTGGGGGCAAAGGGATTAACTTCGTCGTTGTGCGTGCGTTGTCTTGCCTTGCACTGCAGAACGGCCTTGATTTTATGTTGATTTTGTGTGGTTTGATT]

[+] EMBL AK068303             [GTGGGCCGCGTCCATCGCACTGGTCCACTCGCCTCTCCCCTCCCCCCTCCATTCCGCTCCGATTTACCGCCTCGCCGGCCGCCGCAGTAGGCGGCGCTACGGTTATTTCGGTTAGGGTTCCGGCGAGGCCAACGCCCACCCCCCACCTCCACCTCCACCTCCCCCAGAGCGAGCCGCCGCCGCCTGTGGAGGGCCAGGGAGAGATGGTTTTCGTGTGGCTCACCGCGTTCTTCCTCGTCGTGGCGCTCATCGTGCTCGTCATCTACCAGCTGATGTGCTTGGCAGATCTGGAGTTTGACTATATCAATCCATTCGATTCATCCTCCCGGATAAATAAAGTGGTTATTCCAGAATTCGTATTGCAAGCAGCTCTAAGTGTATTATTCCTCCTATCGGGGCATTGGGCAATGTTCTTACTTTCTGCCCCGATGGTGTACTATAACTATACGCTGTAAGTGCTGCTGTCTTCTATCCGCCTTTCAGTCTTTAAAACATTTTATAGTGCAAAATGGACCAAATGAAAAGTCCGGGACTGCTGTCTTCTTTGTCCTAAGTTATTATTTTGCCATGACTAGTATAAACAGATGAACTGAAAGTTAGAAATGGTACAGTCATTCATGTCTATTATGTGAGAACCAAAACAATAATTTGAAAATGGAAATGGGTGTTCAAGGTTGAGATACCTTTTATAAAGCTGTTTAGGCTGTTTGTTCAGAAAATTTTAGATTAAAATGGTCAGTGAAGTTCTTGGTCTCCTTCAGAAAACAAGTTTTGTACTTTACACATAATATGGTATATGACCTACTTTTGCATTGCCCTGATTTCTGACTTTTGATATACCTTAATACTGCACACGTCTGGATCTTTATTAGTGTAACTTACTAGACATCCTTCTAATATCTTACTGTATTTTCTTATCTGCATTCAGGAAGCACTAAGTTCTGATATGTGTGTCAGGCATGCTTGTTTTGGACCATGATTTTACTTTATTTGATAACTCTGAATTTCTATGTAGCTTTTTTGTGCCTCTTGTTGTACTAAGTTTTATAGGGTAAGTGGTCTTATGATCGATAATATAGGTGTATAACTTCTTATATCTTATATTTGAACAAATGAAGGGATAATGCTGGCTCCTGCATGCAGTATCTACAAGAATGCCTGAAAACTGAAAAGTAGTTCCTACAAACATCTGCAAAACCATCATATTTCATAGTCCTATAG AAAGCACAATCTATATACCCTTCCTAACTTTGTGAATATCTTTTCTTAGCCAACCCTTTTCCTCTTTGACGAAAAACAGCAGGAGAGGCAGAGGCTCCTACTGTGCTATATATATTAGATTAGATAAAAGAAAGTTATTTACAAAAAAAAAAACAAAGAAGAAGAGGGAATTTACAAAGCAGATGCTATGCTAAATTCTTAGACGACCTGTATATTGATGCTTGGGACCCCATGTACTAGTATGGTGAGATTATTCAGTCTCGTGCTGTTTAATGTTTGTCCCAGATGAATTAATTCCTTCCCACCCACCCGGACCCATGTTCGTTGCATGTTTTCCATGCTATGGTGTTGCTTGTGGTTGATGATGTAGTGATGAAATCACGAAATTTGACTGTTATTGGTGTGTTCGTGATAAAAAACAACAACATGGGACTGAGAGAACTAGGGTGGATCTAATAGCATACAGTCAGATTTAACCATGTCAGGGAGCTACTGAGAAACTAAATATTGTAATTTTCCTGTAAGCATATTGGTGTAGTATGTGACATCATGGTTAAAGATTCTTGCCTGATTTTAGGTTGGTTTTGAATTGAGGTCTTAGAAGTTAGAATCACTTAGAAGGTAATGGGTAAATATGGTTTTAGAAGGCAGCATATTGCTCAACTTTTGTTGTTAACTATTATTTGATTATCCAGGAATGCAAATCTTTAATTCCAACCAATCAACATATATGTTATCATGTTCAATATCGGATGTAAACAGCATGCGCTATTAATGGAACAGATGTGAACATGCTGGTGTCAGAGTATCAGCACTATAGCGAGATATGGCTGTATCACAAAAGTGCAAATTTCAAGGGCTTGAACTTTGTCAGTGTATTGTATATTTCCATTAGAACTGTAGTCAGATCATCCCTTGTCACTTAGTTTTTTCCTTTTGAAGAAAGAAACATGACTGAAACATGAGTTAAGGTTCCCAGAACTGTCACCATTCTATAGAGCTAGGTTTAGCAGTTTTTTTTCAGAAAGAAACATGAGTGATAAACTTGAGCTAAGGTTCCCTGAACTGTCACCACTCTATAGGTCTAGGTTTTCTGTTGATGATTTTATACTTGTCTGCTACTTAAAAGAAATCAAAAACAGTTTGTCGACTTGACTGGGAACATTTTTATGGTCTTTGCATGCTGCAGGTACCAGCGACGACAACATCTTGTAGATGTAACAGAAATATTTAATCATCTTGGCCGGGAGAAGAAACGCCGCCTTTTTAAGATAGTTGGTCTCATTATTCTCCTATTCTTGTCCTTGTTTTGGATGATCTGGACTGTATTATTGGAGGAGGATGAGTAGAATGAAAAAAAAAACACTATGGTAGCTCATATTGGCGTTCCAAGTTCCAACCATTAGTTAGGTATTACTACAACATTATCCTCATTGCATGCTGAACACCCTGTTGCAGTCCTATTAATCGATACCAAAATTGTTTTCGTCAAATGCAGGTCATCTGGAGAAGCAAGACAAGTGAAAAACATTGTGCCCCAAAAGTATTGTTGGCTTGTGGAGCTGTTTTTTCTCCGATTTATAGTGAAGCTCCTATTATTGTCGCATGTAACATGTAAATTAGGAGCTACTGGGCATCAGTTCTCGTGGGGGCAAAGGGATTAACTTCGTCGTTGTGCGTGCGTTGTCTTGCCTTGCACTGCAGAACGGCCTTGATTTTATGTTGATTTTGTGTGGTTTGATT]
[+] EMBL CA766240             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TGCTGTCTTCTATCCGCCTTTCAGTCTTTAAAACATTTTATAGTGCAAAATGGACCAAATGAAAAGTCCGGGACTGCTGTCTTCTTTGTCCTAAGTTATTATTTTGCCATGACTAGTATAAACAGATGAACTGAAAGTTAGAAATGGTACAGTCATTCATGTCTATTATGTGAGAACCAAAACAATAATTTGAAAATGGAAATGGGTGTTCAAGGTTGAGATACCTTTTATAAAGCTGTTTAGGCTGTTTGTTCAGAAAATTTTAGATTAAAATGGTCAGTGAAGTTCTTGGTCTCCTTCAGAAAACAAGTTTTGTACTTTACACATAATATGGTATATGACCTACTTTTGCATTGCCCTGATTTCTGACTTTTGATATACCTTAATACTGCACACGTCTGGATCTTTATTAGTGTAACTTACTAGACATCCTTCTAATATCTTACTGTATTTTCTTATCTGCATTCAGGAAGCACTAAGTTCTGATATGTGTGTCAGGCATGCTTGTTTTGGACCATGATCTTACTTTATTTGATAACTCTGAATTTCTATGTAGCTTTTTTGTGCCTCTTGTTGTACTAAGTTTTATAGGGTAAGTGGTCTTATGATCGATAATATAGGTGTATAACTTCTTATATCTTATATTTGAACAAATGAAGGGATAATGCTGGCTCCTGCATGCAGTATCTACAAGAATGCCTGAAAACTGAAAAGTAGTTCCTACAAACATCTGCAAAACCATCATATTTCATAGTCCTATAGNAAAGCACAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]


>consensus_6273#0 GTGGGCCGCGTCCATCGCACTGGTCCACTCGCCTCTCCCCTCCCCCCTCCATTCCGCTCC GATTTACCGCCTCGCCGGCCGCCGCAGTAGGCGGCGCTACGGTTATTTCGGTTAGGGTTC CGGCGAGGCCAACGCCCACCCCCCACCTCCACCTCCACCTCCCCCAGAGCGAGCCGCCGC CGCCTGTGGAGGGCCAGGGAGAGATGGTTTTCGTGTGGCTCACCGCGTTCTTCCTCGTCG TGGCGCTCATCGTGCTCGTCATCTACCAGCTGATGTGCTTGGCAGATCTGGAGTTTGACT ATATCAATCCATTCGATTCATCCTCCCGGATAAATAAAGTGGTTATTCCAGAATTCGTAT TGCAAGCAGCTCTAAGTGTATTATTCCTCCTATCGGGGCATTGGGCAATGTTCTTACTTT CTGCCCCGATGGTGTACTATAACTATACGCTGTAAGTGCTGCTGTCTTCTATCCGCCTTT CAGTCTTTAAAACATTTTATAGTGCAAAATGGACCAAATGAAAAGTCCGGGACTGCTGTC TTCTTTGTCCTAAGTTATTATTTTGCCATGACTAGTATAAACAGATGAACTGAAAGTTAG AAATGGTACAGTCATTCATGTCTATTATGTGAGAACCAAAACAATAATTTGAAAATGGAA ATGGGTGTTCAAGGTTGAGATACCTTTTATAAAGCTGTTTAGGCTGTTTGTTCAGAAAAT TTTAGATTAAAATGGTCAGTGAAGTTCTTGGTCTCCTTCAGAAAACAAGTTTTGTACTTT ACACATAATATGGTATATGACCTACTTTTGCATTGCCCTGATTTCTGACTTTTGATATAC CTTAATACTGCACACGTCTGGATCTTTATTAGTGTAACTTACTAGACATCCTTCTAATAT CTTACTGTATTTTCTTATCTGCATTCAGGAAGCACTAAGTTCTGATATGTGTGTCAGGCA TGCTTGTTTTGGACCATGATTTTACTTTATTTGATAACTCTGAATTTCTATGTAGCTTTT TTGTGCCTCTTGTTGTACTAAGTTTTATAGGGTAAGTGGTCTTATGATCGATAATATAGG TGTATAACTTCTTATATCTTATATTTGAACAAATGAAGGGATAATGCTGGCTCCTGCATG CAGTATCTACAAGAATGCCTGAAAACTGAAAAGTAGTTCCTACAAACATCTGCAAAACCA TCATATTTCATAGTCCTATAGAAAGCACAATCTATATACCCTTCCTAACTTTGTGAATAT CTTTTCTTAGCCAACCCTTTTCCTCTTTGACGAAAAACAGCAGGAGAGGCAGAGGCTCCT ACTGTGCTATATATATTAGATTAGATAAAAGAAAGTTATTTACAAAAAAAAAAACAAAGA AGAAGAGGGAATTTACAAAGCAGATGCTATGCTAAATTCTTAGACGACCTGTATATTGAT GCTTGGGACCCCATGTACTAGTATGGTGAGATTATTCAGTCTCGTGCTGTTTAATGTTTG TCCCAGATGAATTAATTCCTTCCCACCCACCCGGACCCATGTTCGTTGCATGTTTTCCAT GCTATGGTGTTGCTTGTGGTTGATGATGTAGTGATGAAATCACGAAATTTGACTGTTATT GGTGTGTTCGTGATAAAAAACAACAACATGGGACTGAGAGAACTAGGGTGGATCTAATAG CATACAGTCAGATTTAACCATGTCAGGGAGCTACTGAGAAACTAAATATTGTAATTTTCC TGTAAGCATATTGGTGTAGTATGTGACATCATGGTTAAAGATTCTTGCCTGATTTTAGGT TGGTTTTGAATTGAGGTCTTAGAAGTTAGAATCACTTAGAAGGTAATGGGTAAATATGGT TTTAGAAGGCAGCATATTGCTCAACTTTTGTTGTTAACTATTATTTGATTATCCAGGAAT GCAAATCTTTAATTCCAACCAATCAACATATATGTTATCATGTTCAATATCGGATGTAAA CAGCATGCGCTATTAATGGAACAGATGTGAACATGCTGGTGTCAGAGTATCAGCACTATA GCGAGATATGGCTGTATCACAAAAGTGCAAATTTCAAGGGCTTGAACTTTGTCAGTGTAT TGTATATTTCCATTAGAACTGTAGTCAGATCATCCCTTGTCACTTAGTTTTTTCCTTTTG AAGAAAGAAACATGACTGAAACATGAGTTAAGGTTCCCAGAACTGTCACCATTCTATAGA GCTAGGTTTAGCAGTTTTTTTTCAGAAAGAAACATGAGTGATAAACTTGAGCTAAGGTTC CCTGAACTGTCACCACTCTATAGGTCTAGGTTTTCTGTTGATGATTTTATACTTGTCTGC TACTTAAAAGAAATCAAAAACAGTTTGTCGACTTGACTGGGAACATTTTTATGGTCTTTG CATGCTGCAGGTACCAGCGACGACAACATCTTGTAGATGTAACAGAAATATTTAATCATC TTGGCCGGGAGAAGAAACGCCGCCTTTTTAAGATAGTTGGTCTCATTATTCTCCTATTCT TGTCCTTGTTTTGGATGATCTGGACTGTATTATTGGAGGAGGATGAGTAGAATGAAAAAA AAAACACTATGGTAGCTCATATTGGCGTTCCAAGTTCCAACCATTAGTTAGGTATTACTA CAACATTATCCTCATTGCATGCTGAACACCCTGTTGCAGTCCTATTAATCGATACCAAAA TTGTTTTCGTCAAATGCAGGTCATCTGGAGAAGCAAGACAAGTGAAAAACATTGTGCCCC AAAAGTATTGTTGGCTTGTGGAGCTGTTTTTTCTCCGATTTATAGTGAAGCTCCTATTAT TGTCGCATGTAACATGTAAATTAGGAGCTACTGGGCATCAGTTCTCGTGGGGGCAAAGGG ATTAACTTCGTCGTTGTGCGTGCGTTGTCTTGCCTTGCACTGCAGAACGGCCTTGATTTT ATGTTGATTTTGTGTGGTTTGATT



consensusID : consensus_6273#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 770
fasta sequence
                              [TGGTTTAGTAACTTACAATTTTGGTTACATTATTCATCCCTTTGGCTGTGGAATTTGGTTTAGAGAATCATTTCCTGATGTTTTAGTTCTACCCTTTTCTTTTGTTTTGCAGCTGATGTGCTTGGCAGATCTGGAGTTTGACTATATCAATCCATTCGATTCATCCTCCCGGATAAATAAAGTGGTTATTCCAGAATTCGTATTGCAAGCAGCTCTAAGTGTATTATTCCTCCTATCGGGGCATTGGGCAATGTTCTTACTTTCTGCCCCGATGGTGTACTATAACTATACGCTGTACCAGCGACGACAACATCTTGTAGATGTAACAGAAATATTTAATCATCTTGGCCGGGAGAAGAAACGCCGCCTTTTTAAGATAGTTGGTCTCATTATTCTCCTATTCTTGTCCTTGTTTTGGATGATCTGGACTGTATTATTGGAGGAGGATGAGTAGAATGAAAAAAAAAACACTATGGTAGCTCATATTGGCGTTCCAAGTTCCAACCATTAGTTAGGTCATCTGGAGAAGCAAGACAAGTGAAAAACATTGTGCCCCAAAAGTATTGTTGGCTTGTGGAGCTGTTTTTTCTCCGATTTATAGTGAAGCTCCTATTATTGTCGCATGTAACATGTAAATTAGGAGCTACTGGGCATCAGTTCTCGTGGGGGCAAAGGGATTAACTTCGTCGTTGTGCGTGCGTTGTCTTCCCTTGCACTGCAGAACGGCCTTGATTTTGGGTTGATTTTGTGTGGTTTGATTTTTGTTTAGC]

[-] EMBL CB652425             [TGGTTTAGTAACTTACAATTTTGGTTACATTATTCATCCCTTTGGCTGTGGAATTTGGTTTAGAGAATCATTTCCTGATGTTTTAGTTCTACCCTTTTCTTTTGTTTTGCAGCTGATGTGCTTGGCAGATCTGGAGTTTGACTATATCAATCCATTCGATTCATCCTCCCGGATAAATAAAGTGGTTATTCCAGAATTCGTATTGCAAGCAGCTCTAAGTGTATTATTCCTCCTATCGGGGCATTGGGCAATGTTCTTACTTTCTGCCCCGATGGTGTACTATAACTATACGCTGTACCAGCGACGACAACATCTTGTAGATGTAACAGAAATATTTAATCATCTTGGCCGGGAGAAGAAACGCCGCCTTTTTAAGATAGTTGGTCTCATTATTCTCCTATTCTTGTCCTTGTTTTGGATGATCTGGACTGTATTATTGGAGGAGGATGAGTAGAATGAAAAAAAAAACACTATGGTAGCTCATATTGGCGTTCCAAGTTCCAACCATTAGTTAGGTCATCTGGAGAAGCAAGACAAGTGAAAAACATTGTGCCCCAAAAGTATTGTTGGCTTGTGGAGCTGTTTTTTCTCCGATTTATAGTGAAGCTCCTATTATTGTCGCATGTAACATGTAAATTAGGAGCTACTGGGCATCAGTTCTCGTGGGGGCAAAGGGATTAACTTCGTCGTTGTGCGTGCGTTGTCTTCCCTTGCACTGCAGAACGGCCTTGATTTTGGGTTGATTTTGTGTGGTTTGATTTTTGTTTAGC]


>consensus_6273#1 TGGTTTAGTAACTTACAATTTTGGTTACATTATTCATCCCTTTGGCTGTGGAATTTGGTT TAGAGAATCATTTCCTGATGTTTTAGTTCTACCCTTTTCTTTTGTTTTGCAGCTGATGTG CTTGGCAGATCTGGAGTTTGACTATATCAATCCATTCGATTCATCCTCCCGGATAAATAA AGTGGTTATTCCAGAATTCGTATTGCAAGCAGCTCTAAGTGTATTATTCCTCCTATCGGG GCATTGGGCAATGTTCTTACTTTCTGCCCCGATGGTGTACTATAACTATACGCTGTACCA GCGACGACAACATCTTGTAGATGTAACAGAAATATTTAATCATCTTGGCCGGGAGAAGAA ACGCCGCCTTTTTAAGATAGTTGGTCTCATTATTCTCCTATTCTTGTCCTTGTTTTGGAT GATCTGGACTGTATTATTGGAGGAGGATGAGTAGAATGAAAAAAAAAACACTATGGTAGC TCATATTGGCGTTCCAAGTTCCAACCATTAGTTAGGTCATCTGGAGAAGCAAGACAAGTG AAAAACATTGTGCCCCAAAAGTATTGTTGGCTTGTGGAGCTGTTTTTTCTCCGATTTATA GTGAAGCTCCTATTATTGTCGCATGTAACATGTAAATTAGGAGCTACTGGGCATCAGTTC TCGTGGGGGCAAAGGGATTAACTTCGTCGTTGTGCGTGCGTTGTCTTCCCTTGCACTGCA GAACGGCCTTGATTTTGGGTTGATTTTGTGTGGTTTGATTTTTGTTTAGC



consensusID : consensus_6273#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 253
fasta sequence
                              [GCCAGGGAGAGATGGTTTTCGTGTGGCTCACCGCGTTCTTCCTCGTCGTGGCGCTCATCGTGCTCGTCATCTACCAGGTGAGGGAGGGAGGGAGATAGCTAGCTACCCCCCGCCTCCTCGGTATCTCCGCCCGTCTCCGGGTCTGACCCGTACGGGATTTCCTTTGGATGGAGAGGGCTGCGGATCTGTGGATCGATTGAGGAGACATTCTCGAATGATTTTGGGGGGTTAGAGCGACTCCTGATTCCAAATT]

[+] EMBL CB652424             [GCCAGGGAGAGATGGTTTTCGTGTGGCTCACCGCGTTCTTCCTCGTCGTGGCGCTCATCGTGCTCGTCATCTACCAGGTGAGGGAGGGAGGGAGATAGCTAGCTACCCCCCGCCTCCTCGGTATCTCCGCCCGTCTCCGGGTCTGACCCGTACGGGATTTCCTTTGGATGGAGAGGGCTGCGGATCTGTGGATCGATTGAGGAGACATTCTCGAATGATTTTGGGGGGTTAGAGCGACTCCTGATTCCAAATT]


>consensus_6273#2 GCCAGGGAGAGATGGTTTTCGTGTGGCTCACCGCGTTCTTCCTCGTCGTGGCGCTCATCG TGCTCGTCATCTACCAGGTGAGGGAGGGAGGGAGATAGCTAGCTACCCCCCGCCTCCTCG GTATCTCCGCCCGTCTCCGGGTCTGACCCGTACGGGATTTCCTTTGGATGGAGAGGGCTG CGGATCTGTGGATCGATTGAGGAGACATTCTCGAATGATTTTGGGGGGTTAGAGCGACTC CTGATTCCAAATT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6273#0      GTGGGCCGCGTCCATCGCACTGGTCCACTCGCCTCTCCCCTCCCCCCTCCATTCCGCTCC 60
consensus_6273#1      ------------------------------------------------------------
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      GATTTACCGCCTCGCCGGCCGCCGCAGTAGGCGGCGCTACGGTTATTTCGGTTAGGGTTC 120
consensus_6273#1      ------------------------------------------------------------
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      CGGCGAGGCCAACGCCCACCCCCCACCTCCACCTCCACCTCCCCCAGAGCGAGCCGCCGC 180
consensus_6273#1      ------------------------------------------------------------
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      CGCCTGTGGAGGGCCAGGGAGAGATGGTTTTCGTGTGGCTCACCGCGTTCTTCCTCGTCG 240
consensus_6273#1      ------------------------------------------------------------
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      TGGCGCTCATCGTGCTCGTCATCTACCAGCTGATGTGCTTGGCAGATCTGGAGTTTGACT 300
consensus_6273#1      ------------------------------------------------------------
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      ATATCAATCCATTCGATTCATCCTCCCGGATAAATAAAGTGGTTATTCCAGAATTCGTAT 360
consensus_6273#1      ------------------------------------------------------------
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      TGCAAGCAGCTCTAAGTGTATTATTCCTCCTATCGGGGCATTGGGCAATGTTCTTACTTT 420
consensus_6273#1      ------------------------------------------------------------
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      CTGCCCCGATGGTGTACTATAACTATACGCTGTAAGTGCTGCTGTCTTCTATCCGCCTTT 480
consensus_6273#1      ------------------------------------------------------------
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      CAGTCTTTAAAACATTTTATAGTGCAAAATGGACCAAATGAAAAGTCCGGGACTGCTGTC 540
consensus_6273#1      ------------------------------------------------------------
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      TTCTTTGTCCTAAGTTATTATTTTGCCATGACTAGTATAAACAGATGAACTGAAAGTTAG 600
consensus_6273#1      ------------------------------------------------------------
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      AAATGGTACAGTCATTCATGTCTATTATGTGAGAACCAAAACAATAATTTGAAAATGGAA 660
consensus_6273#1      ------------------------------------------------------------
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      ATGGGTGTTCAAGGTTGAGATACCTTTTATAAAGCTGTTTAGGCTGTTTGTTCAGAAAAT 720
consensus_6273#1      ------------------------------------------------------------
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      TTTAGATTAAAATGGTCAGTGAAGTTCTTGGTCTCCTTCAGAAAACAAGTTTTGTACTTT 780
consensus_6273#1      ------------------------------------------------------------
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      ACACATAATATGGTATATGACCTACTTTTGCATTGCCCTGATTTCTGACTTTTGATATAC 840
consensus_6273#1      ------------------------------------------------------------
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      CTTAATACTGCACACGTCTGGATCTTTATTAGTGTAACTTACTAGACATCCTTCTAATAT 900
consensus_6273#1      ------------------------------------------------------------
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      CTTACTGTATTTTCTTATCTGCATTCAGGAAGCACTAAGTTCTGATATGTGTGTCAGGCA 960
consensus_6273#1      ------------------------------------------------------------
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      TGCTTGTTTTGGACCATGATTTTACTTTATTTGATAACTCTGAATTTCTATGTAGCTTTT 1020
consensus_6273#1      ------------------------------------------------------------
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      TTGTGCCTCTTGTTGTACTAAGTTTTATAGGGTAAGTGGTCTTATGATCGATAATATAGG 1080
consensus_6273#1      ------------------------------------------------------------
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      TGTATAACTTCTTATATCTTATATTTGAACAAATGAAGGGATAATGCTGGCTCCTGCATG 1140
consensus_6273#1      ------------------------------------------------------------
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      CAGTATCTACAAGAATGCCTGAAAACTGAAAAGTAGTTCCTACAAACATCTGCAAAACCA 1200
consensus_6273#1      ------------------------------------------------------------
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      TCATATTTCATAGTCCTATAGAAAGCACAATCTATATACCCTTCCTAACTTTGTGAATAT 1260
consensus_6273#1      ------------------------------------------------------------
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      CTTTTCTTAGCCAACCCTTTTCCTCTTTGACGAAAAACAGCAGGAGAGGCAGAGGCTCCT 1320
consensus_6273#1      ------------------------------------------------------------
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      ACTGTGCTATATATATTAGATTAGATAAAAGAAAGTTATTTACAAAAAAAAAAACAAAGA 1380
consensus_6273#1      ------------------------------------------------------------
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      AGAAGAGGGAATTTACAAAGCAGATGCTATGCTAAATTCTTAGACGACCTGTATATTGAT 1440
consensus_6273#1      ------------------------------------------------------------
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      GCTTGGGACCCCATGTACTAGTATGGTGAGATTATTCAGTCTCGTGCTGTTTAATGTTTG 1500
consensus_6273#1      ------------------------------------------------------------
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      TCCCAGATGAATTAATTCCTTCCCACCCACCCGGACCCATGTTCGTTGCATGTTTTCCAT 1560
consensus_6273#1      ------------------------------------------------------------
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      GCTATGGTGTTGCTTGTGGTTGATGATGTAGTGATGAAATCACGAAATTTGACTGTTATT 1620
consensus_6273#1      ------------------------------------------------------------
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      GGTGTGTTCGTGATAAAAAACAACAACATGGGACTGAGAGAACTAGGGTGGATCTAATAG 1680
consensus_6273#1      ------------------------------------------------------------
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      CATACAGTCAGATTTAACCATGTCAGGGAGCTACTGAGAAACTAAATATTGTAATTTTCC 1740
consensus_6273#1      ------------------------------------------------------------
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      TGTAAGCATATTGGTGTAGTATGTGACATCATGGTTAAAGATTCTTGCCTGATTTTAGGT 1800
consensus_6273#1      ------------------------------------------------------------
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      TGGTTTTGAATTGAGGTCTTAGAAGTTAGAATCACTTAGAAGGTAATGGGTAAATATGGT 1860
consensus_6273#1      ------------------------------------------------------------
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      TTTAGAAGGCAGCATATTGCTCAACTTTTGTTGTTAACTATTATTTGATTATCCAGGAAT 1920
consensus_6273#1      ------------------------------------------------------------
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      GCAAATCTTTAATTCCAACCAATCAACATATATGTTATCATGTTCAATATCGGATGTAAA 1980
consensus_6273#1      ------------------------------------------------------------
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      CAGCATGCGCTATTAATGGAACAGATGTGAACATGCTGGTGTCAGAGTATCAGCACTATA 2040
consensus_6273#1      ------------------------------------------------------------
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      GCGAGATATGGCTGTATCACAAAAGTGCAAATTTCAAGGGCTTGAACTTTGTCAGTGTAT 2100
consensus_6273#1      -----------------------------------------------------------T 1
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      TGTATATTTCCATTAGAACTGTAGTCAGATCATCCCTTGTCACTTAGTTTTTTCCTTTTG 2160
consensus_6273#1      GGTTTAGTAAC-TTACAATTTTGGTTACATTATTCATC--CCTTTGGCTGTGGAATTTGG 58
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      AAGAAAGAAACATGACTGAAACATGAGTTAAGGTTCCCAGAACTGTCACCATTCTATAGA 2220
consensus_6273#1      TTTAGAGAATCATTTCCTGAT-----GTTTTAGTTCTACCCTTTTCTTTTGTTTTGCAGC 113
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      -GCTAGGTTTAGCAGTTTTTTTTCAGAAAGAAACATGAGTGATAAACTTGAGCTAAGGTT 2279
consensus_6273#1      TGATGTGCTTGGCAGATCT-----GGAGTTTGACTATATCAATCCATTCGA-TTCATCCT 167
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      CCCTGAACTGTCACCACTCTATAGGTCTAGGTTTTCTGTTG---ATGATTTTATACTTGT 2336
consensus_6273#1      CCCGGATAAATAAAGTGGTTAT---TCCAGAATTCGTATTGCAAGCAGCTCTAAGTGTAT 224
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      C--TGCTACTTAAAAGAAATCAAAAACAGTTTGTCGACTTGACTGGGAACATTTTTATGG 2394
consensus_6273#1      TATTCCTCCTATCGGGGCATTGGGCAATGTTCTTACTTTCTGCCCCGATGGTG--TACTA 282
consensus_6273#2      ----------GCCAGGGAG--AGATGGTTTTCGTGTGGCTCACCGCGTTCTTCCTCGTCG 48
                                     *             **  *        *   *    *        

consensus_6273#0      TCTTTGCATGCTGCAGGTACCAGCGACGACAACATCTTGTAGATGTAACAGAAATATTTA 2454
consensus_6273#1      TAACTATACGCTG----TACCAGCGACGACAACATCTTGTAGATGTAACAGAAATATTTA 338
consensus_6273#2      TGGC-GCTCATCG----TGCT--CGTCATCTACCAGGTGAGGGAGGGAGGGAGATAGCTA 101
                      *           *    * *   ** *  * **    **  *  *  *  ** ***  **

consensus_6273#0      ATCATCTTGGCCGGGAGAAGAAACGCCGCCTTTTTAAGATAGTTGGTCTCATTATTCTCC 2514
consensus_6273#1      ATCATCTTGGCCGGGAGAAGAAACGCCGCCTTTTTAAGATAGTTGGTCTCATTATTCTCC 398
consensus_6273#2      GCTACCCCC--------------CGCCTCCTCGGTATCTCCGCCCGTCTCCGGGTCTGAC 147
                         * *                 **** ***   **     *   *****    *    *

consensus_6273#0      TATTCTTGTCCTTGTTTTGGATGATCTGGACTGTATTATTGGAGGAGGATGAGTAGAATG 2574
consensus_6273#1      TATTCTTGTCCTTGTTTTGGATGATCTGGACTGTATTATTGGAGGAGGATGAGTAGAATG 458
consensus_6273#2      CCGTACGGGATTTCCTTTGGATGGAGAGGGCTGCGGATCTGTGGATCGATT-GAGGAGAC 206
                         *   *   **  ********    ** ***      **  *   ***  *  **   

consensus_6273#0      AAAAAAAAAACACTATGGTAGCTCATATTGGCGTTCCAAGTTCCAACCATTAGTTAGGTA 2634
consensus_6273#1      AAAAAAAAAACACTATGGTAGCTCATATTGGCGTTCCAAGTTCCAACCATTAGTTAGGT- 517
consensus_6273#2      ATTCTCGAATGATTTTGGGGGGTTAGAGCGAC--TCCTGATTCCAA--ATT--------- 253
                      *      **  * * ***  * * * *  * *  ***   ******  ***         

consensus_6273#0      TTACTACAACATTATCCTCATTGCATGCTGAACACCCTGTTGCAGTCCTATTAATCGATA 2694
consensus_6273#1      ------------------------------------------------------------
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      CCAAAATTGTTTTCGTCAAATGCAGGTCATCTGGAGAAGCAAGACAAGTGAAAAACATTG 2754
consensus_6273#1      ---------------------------CATCTGGAGAAGCAAGACAAGTGAAAAACATTG 550
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      TGCCCCAAAAGTATTGTTGGCTTGTGGAGCTGTTTTTTCTCCGATTTATAGTGAAGCTCC 2814
consensus_6273#1      TGCCCCAAAAGTATTGTTGGCTTGTGGAGCTGTTTTTTCTCCGATTTATAGTGAAGCTCC 610
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      TATTATTGTCGCATGTAACATGTAAATTAGGAGCTACTGGGCATCAGTTCTCGTGGGGGC 2874
consensus_6273#1      TATTATTGTCGCATGTAACATGTAAATTAGGAGCTACTGGGCATCAGTTCTCGTGGGGGC 670
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      AAAGGGATTAACTTCGTCGTTGTGCGTGCGTTGTCTTGCCTTGCACTGCAGAACGGCCTT 2934
consensus_6273#1      AAAGGGATTAACTTCGTCGTTGTGCGTGCGTTGTCTTCCCTTGCACTGCAGAACGGCCTT 730
consensus_6273#2      ------------------------------------------------------------
                                                                                  

consensus_6273#0      GATTTTATGTTGATTTTGTGTGGTTTGATT---------- 2964
consensus_6273#1      GATTTTGGGTTGATTTTGTGTGGTTTGATTTTTGTTTAGC 770
consensus_6273#2      ----------------------------------------
                                                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)