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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6280#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1532 fasta sequence
[TACGACCATGGCGTTCTTCCTCCCTCTCGCGTTCTCCCTCTTCCTCGCCGTCATCTCCGCCTACGTCCTCCAGCTCCTCGCCGACGCTCGCCGCCGGCTGCCGCCAGGCCCGTGGCCGCTGCCGCTGATCGGCAACCTCCACCAGCTCGACCACCTGCCGCACCGCTCCCTCGCGCGCCTCGCCGCGCGCCACGGGCCGCTCATGTCGCTCCGCCTCGGCACCGTGCGCGCCGTCGTCGCGTCGTCGCCGGAGATGGCGCGGGAGGTCCTGCAGCGGCACAACGCCGACATCGCCGCCAGGTCCTTCGGCGACTCCATGCGCGCCGGCGGCCACTGCGAGAACTCCGTGGTTTGCCTGCCCCCGCGCCGCAGGTGGCGCGCCCTGCGGCGGCTCAGCACCGTCGGGCTCTTCTCGCCGCGCCGGCTCGACGCCATGAGGGCTCTCCTGGAGGAGAAGGTGGCCGAGCTTGTCCGCCGCGTGTCCGGCCACGCCGCGCGCGGCGAGGCCGTGGACGTGGGCCACGCCGCGCACGTCGCCGCGCTGGGCGTCCTGTCGCGCACCATGTTCTCCGTCGACCTCGACCCCGAGGCGGCGCGCGAGGTGAGCGACATCGTGGACGAGGCGTCGGTGCTGGGCACCGGGCCGAACGTCTCCGACTTCTTCCCGGCGATCGCGCCGGCCGACCTCCAGGGAGTTCGCCGGAGGATGGCGAGGCTGGTGAAGAGGATGTACGCCATCATTGACGAGCAGATCGAGCGGAGGATGCATGGCCGCACCGCCGGCGAGCCACGCAAGAACGACCTGCTCGACGTGATGCTGGAGGAGGGGGAGAGTAAAGAAGATAGCAACGAAATTAACCGTGATGCCATCCGTGGACTTTTTACAGATTTGTTCACTGGTGGAGAGACGACTTCTCACACAATGGAGTGTGCAATGGCAGAACTATTGCAGTGTCCAAACTCGATGAGAAGGGTGCACGAACTCAAGAGTGTGATAGGCAGCAAACAACAAATGGATGAACATGATATTACCAAACTGCCCTACCACCATACGAGGCCGAAGCCACGATAGAAATACAAGGTTACACCATTCCTAAGGGAGCGAAAGTGCTTATAAACTTGTGGGCGATCAATCGATGCGCCAACACATGGACCGAGCCAGATAAGTTCATGCCAGAGAGGTTCTACGATAGTGACATTACTTTCATGGGGAGGGATTTTCAACTAATTCCTTTTGGAGCTGGAAAGCGCATTTGCCTTGGATTGCCACTAGCTCACAGAATGGTCCATTTGATGCTTGGCTCGTTGCTACACCGATTCACATGGACATTGCCAGCTGAGGCTGGGAAAAATGGAGTGGATATGAGGG----AGAGGTTTGGGTTAACA-CTATCATTT-GTTGCTCCCCTCTATGTAATAGCTCAAGAAATACAATAAGAAACATGTGACTTTTTTATGATGAAGAATAGAAGAACATTACAAATGTAATGCGATGATAGCTGCTCTAAATATGTAATCACCCAAGATATTTTCTG]
[+] EMBL AK058441 [TACGACCATGGCGTTCTTCCTCCCTCTCGCGTTCTCCCTCTTCCTCGCCGTCATCTCCGCCTACGTCCTCCAGCTCCTCGCCGACGCTCGCCGCCGGCTGCCGCCAGGCCCGTGGCCGCTGCCGCTGATCGGCAACCTCCACCAGCTCGACCACCTGCCGCACCGCTCCCTCGCGCGCCTCGCCGCGCGCCACGGGCCGCTCATGTCGCTCCGCCTCGGCACCGTGCGCGCCGTCGTCGCGTCGTCGCCGGAGATGGCGCGGGAGGTCCTGCAGCGGCACAACGCCGACATCGCCGCCAGGTCCTTCGGCGACTCCATGCGCGCCGGCGGCCACTGCGAGAACTCCGTGGTTTGCCTGCCCCCGCGCCGCAGGTGGCGCGCCCTGCGGCGGCTCAGCACCGTCGGGCTCTTCTCGCCGCGCCGGCTCGACGCCATGAGGGCTCTCCTGGAGGAGAAGGTGGCCGAGCTTGTCCGCCGCGTGTCCGGCCACGCCGCGCGCGGCGAGGCCGTGGACGTGGGCCACGCCGCGCACGTCGCCGCGCTGGGCGTCCTGTCGCGCACCATGTTCTCCGTCGACCTCGACCCCGAGGCGGCGCGCGAGGTGAGCGACATCGTGGACGAGGCGTCGGTGCTGGGCACCGGGCCGAACGTCTCCGACTTCTTCCCGGCGATCGCGCCGGCCGACCTCCAGGGAGTTCGCCGGAGGATGGCGAGGCTGGTGAAGAGGATGTACGCCATCATTGACGAGCAGATCGAGCGGAGGATGCATGGCCGCACCGCCGGCGAGCCACGCAAGAACGACCTGCTCGACGTGATGCTGGAGGAGGGGGAGAGTAAAGAAGATAGCAACGAAATTAACCGTGATGCCATCCGTGGACTTTTTACAGATTTGTTCACTGGTGGAGAGACGACTTCTCACACAATGGAGTGTGCAATGGCAGAACTATTGCAGTGTCCAAACTCGATGAGAAGGGTGCACGAACTCAAGAGTGTGATAGGCAGCAAACAACAAATGGATGAACATGATATTACCAAACTGCCCTACCACCATACGAGGCCGAAGCCACGATAGAAATACAAGGTTACACCATTCCTAAGGGAGCGAAAGTGCTTATAAACTTGTGGGCGATCAATCGATGCGCCAACACATGGACCGAGCCAGATAAGTTCATGCCAGAGAGGTTCTACGATAGTGACATTACTTTCATGGGGAGGGATTTTCAACTAATTCCTTTTGGAGCTGGAAAGCGCATTTGCCTTGGATTGCCACTAGCTCACAGAATGGTCCATTTGATGCTTGGCTCGTTGCTACACCGATTCACATGGACATTGCCAGCTGAGGCTGGGAAAAATGGAGTGGATATGAGGG AGAGGTTTGGGTTAACA CTATCATTT GTTGCTCCCCTCTATGTAATAGCTCAAGAAATACAATAAGAAACATGTGACTTTTTTATGATGAAGAATAGAAGAACATTACAAATGTAATGCGATGATAGCTGCTCTAAATATGTAATCACCCAAGAT ]
[+] EMBL CA753792 [ GCCACGCAAGAACGACCTGCTCGACGTGATGCTGGAGGAGGGGGAGAGTAAAGAAGATAGCAACGAAATTAACCGTGATGCCATCCGTGGACTTTTTACAGATTTGTTCACTGGTGGAGAGACGACTTCTCACACAATGGAGTGTGCAATGGCAGAACTATTGCAGTGTCCAAACTCGATGAGAAGGGTGCACGAACTCAAGAGTGTGATAGGCAGCAAACAACAAATGGATGAACATGATATTACCAAACTGCCCTACCACCATACGAGGCCGAAGCCACGATAGAAATACAAGGTTACACCATTCCTAAGGGAGCGAAAGTGCTTATAAACTTGTGGGCGATCAATCGATGCGCCAACACATGGACCGAGCCAGATNAGTTCATGCCAGAGAGGTTCTACGATAGTGACATTACTTTCATGGGGAGGGATTTTCAACTAATTCCTTTTGGAGCTGGAAAGCGCATTTGCCTTGGATTGCCACTAGCTCACAGAATGGTCCATTTGATGCTTGGCTCGTTGCTACACCGATTCACATGGACATTGCCAGCTGAGGCTGGGAAAAATGGAGT GAT TGANGGNAAAAGGGGNTTGGGNTTACACCTATCATTTGGTTG ]
[+] EMBL CA999619 [ TAATTCCTTTTGGAGCTGGAAAGCGCATTTGCCTTGGATTGCCACTAGCTCACAGAATGGTCCATTTGATGCTTGGCTCGTTGCTACACCGATTCACATGGACATTGCCAGCTGAGGCTGGGAAAAATGGAGTGGATATGAGGG AGAGGTTTGGGTTAACA CTATCATTT GTTGCTCCCCTCTATGTAATAGCTCAAGAAATACAATAAGAAACATGTGACTTTTTTATGATGAAGAATAGAAGAACATTACAAATGTAATGCGATGATAGCTGCTCTAAATATGTAATCACCCAAGATATTTTCTG]
consensusID : consensus_6280#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 935 fasta sequence
[TGCTACGACCATGGCGTTCTTCCTCCCTCTCGCGTTCTCCCTCTTCCTCGCCGTCATCTCCGCCTACGTCCTCCAGCTCCTCGCCGACGCTCGCCGCCGGCTGCCGCCAGGCCCGTGGCCGCTGCCGCTGATCGGCAACCTCCACCAGCTCGACCACCTGCCGCACCGCTCCCTCGCGCGCCTCGCCGCGCGCCACGGGCCGCTCATGTCGCTCCGCCTCGGCACCGTGCGCGCCGTCGTCGCGTCGTCGCCGGAGATGGCGCGGGAGGTCCTGCAGCGGCACAACGCCGACATCGCCGCCAGGTCCTTCGGCGACTCCATGCGCGCCGGCGGCCACTGCGAGAACTCCGTGGTTTGCCTGCCCCCGCGCCGCAGGTGGCGCGCCCTGCGGCGGCTCAGCACCGTCGGGCTCTTCTCGCCGCGCCGGCTCGACGCCATGAGGGCTCTCCTGGAGGAGAAGGTGGCCGAGCTTGTCCGCCGCGTGTCCGGCCACGCCGCGCGCGGCGAGGCCGTGGACGTGGGCCACGCCGCGCACGTCGCCGCGCTGGGCGTCCTGTCGCGCACCATGTTCTCCGTCGACCTCGACCCCGAGGCGGCGCGCGAGGTGAGCGACATCGTGGACGAGGCGTCGGTGCTGGGCACCGGGCCGAACGTCTCCGACTTCTTCCCGGCGATCGCGCCGGCCGACCTCCAGGGAGTTCGCCGGAGGATGGCGAGGCTGGTGAAGAGGATGTACGCCATCATTGACGAGCAGATCGAGCGGAGGATGCATGGCCGCACCGCCGGCGAGCCACGCAAGAACGACCTGCTCGACGTGATGCTGGAGGAGGGGGAGAGTAAAGAAGATAGCAACGAAATTAACCGTGATGCCATCCGTGGACTTTTTACAGTGAGTACTTGTACAACTTGCGGACGGATATTAATTTGTGAATAAA]
[+] EMBL AK073585 [TGCTACGACCATGGCGTTCTTCCTCCCTCTCGCGTTCTCCCTCTTCCTCGCCGTCATCTCCGCCTACGTCCTCCAGCTCCTCGCCGACGCTCGCCGCCGGCTGCCGCCAGGCCCGTGGCCGCTGCCGCTGATCGGCAACCTCCACCAGCTCGACCACCTGCCGCACCGCTCCCTCGCGCGCCTCGCCGCGCGCCACGGGCCGCTCATGTCGCTCCGCCTCGGCACCGTGCGCGCCGTCGTCGCGTCGTCGCCGGAGATGGCGCGGGAGGTCCTGCAGCGGCACAACGCCGACATCGCCGCCAGGTCCTTCGGCGACTCCATGCGCGCCGGCGGCCACTGCGAGAACTCCGTGGTTTGCCTGCCCCCGCGCCGCAGGTGGCGCGCCCTGCGGCGGCTCAGCACCGTCGGGCTCTTCTCGCCGCGCCGGCTCGACGCCATGAGGGCTCTCCTGGAGGAGAAGGTGGCCGAGCTTGTCCGCCGCGTGTCCGGCCACGCCGCGCGCGGCGAGGCCGTGGACGTGGGCCACGCCGCGCACGTCGCCGCGCTGGGCGTCCTGTCGCGCACCATGTTCTCCGTCGACCTCGACCCCGAGGCGGCGCGCGAGGTGAGCGACATCGTGGACGAGGCGTCGGTGCTGGGCACCGGGCCGAACGTCTCCGACTTCTTCCCGGCGATCGCGCCGGCCGACCTCCAGGGAGTTCGCCGGAGGATGGCGAGGCTGGTGAAGAGGATGTACGCCATCATTGACGAGCAGATCGAGCGGAGGATGCATGGCCGCACCGCCGGCGAGCCACGCAAGAACGACCTGCTCGACGTGATGCTGGAGGAGGGGGAGAGTAAAGAAGATAGCAACGAAATTAACCGTGATGCCATCCGTGGACTTTTTACAGTGAGTACTTGTACAACTTGCGGACGGATATTAATTTGTGAATAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6280#0 ---TACGACCATGGCGTTCTTCCTCCCTCTCGCGTTCTCCCTCTTCCTCGCCGTCATCTC 57
consensus_6280#1 TGCTACGACCATGGCGTTCTTCCTCCCTCTCGCGTTCTCCCTCTTCCTCGCCGTCATCTC 60
*********************************************************
consensus_6280#0 CGCCTACGTCCTCCAGCTCCTCGCCGACGCTCGCCGCCGGCTGCCGCCAGGCCCGTGGCC 117
consensus_6280#1 CGCCTACGTCCTCCAGCTCCTCGCCGACGCTCGCCGCCGGCTGCCGCCAGGCCCGTGGCC 120
************************************************************
consensus_6280#0 GCTGCCGCTGATCGGCAACCTCCACCAGCTCGACCACCTGCCGCACCGCTCCCTCGCGCG 177
consensus_6280#1 GCTGCCGCTGATCGGCAACCTCCACCAGCTCGACCACCTGCCGCACCGCTCCCTCGCGCG 180
************************************************************
consensus_6280#0 CCTCGCCGCGCGCCACGGGCCGCTCATGTCGCTCCGCCTCGGCACCGTGCGCGCCGTCGT 237
consensus_6280#1 CCTCGCCGCGCGCCACGGGCCGCTCATGTCGCTCCGCCTCGGCACCGTGCGCGCCGTCGT 240
************************************************************
consensus_6280#0 CGCGTCGTCGCCGGAGATGGCGCGGGAGGTCCTGCAGCGGCACAACGCCGACATCGCCGC 297
consensus_6280#1 CGCGTCGTCGCCGGAGATGGCGCGGGAGGTCCTGCAGCGGCACAACGCCGACATCGCCGC 300
************************************************************
consensus_6280#0 CAGGTCCTTCGGCGACTCCATGCGCGCCGGCGGCCACTGCGAGAACTCCGTGGTTTGCCT 357
consensus_6280#1 CAGGTCCTTCGGCGACTCCATGCGCGCCGGCGGCCACTGCGAGAACTCCGTGGTTTGCCT 360
************************************************************
consensus_6280#0 GCCCCCGCGCCGCAGGTGGCGCGCCCTGCGGCGGCTCAGCACCGTCGGGCTCTTCTCGCC 417
consensus_6280#1 GCCCCCGCGCCGCAGGTGGCGCGCCCTGCGGCGGCTCAGCACCGTCGGGCTCTTCTCGCC 420
************************************************************
consensus_6280#0 GCGCCGGCTCGACGCCATGAGGGCTCTCCTGGAGGAGAAGGTGGCCGAGCTTGTCCGCCG 477
consensus_6280#1 GCGCCGGCTCGACGCCATGAGGGCTCTCCTGGAGGAGAAGGTGGCCGAGCTTGTCCGCCG 480
************************************************************
consensus_6280#0 CGTGTCCGGCCACGCCGCGCGCGGCGAGGCCGTGGACGTGGGCCACGCCGCGCACGTCGC 537
consensus_6280#1 CGTGTCCGGCCACGCCGCGCGCGGCGAGGCCGTGGACGTGGGCCACGCCGCGCACGTCGC 540
************************************************************
consensus_6280#0 CGCGCTGGGCGTCCTGTCGCGCACCATGTTCTCCGTCGACCTCGACCCCGAGGCGGCGCG 597
consensus_6280#1 CGCGCTGGGCGTCCTGTCGCGCACCATGTTCTCCGTCGACCTCGACCCCGAGGCGGCGCG 600
************************************************************
consensus_6280#0 CGAGGTGAGCGACATCGTGGACGAGGCGTCGGTGCTGGGCACCGGGCCGAACGTCTCCGA 657
consensus_6280#1 CGAGGTGAGCGACATCGTGGACGAGGCGTCGGTGCTGGGCACCGGGCCGAACGTCTCCGA 660
************************************************************
consensus_6280#0 CTTCTTCCCGGCGATCGCGCCGGCCGACCTCCAGGGAGTTCGCCGGAGGATGGCGAGGCT 717
consensus_6280#1 CTTCTTCCCGGCGATCGCGCCGGCCGACCTCCAGGGAGTTCGCCGGAGGATGGCGAGGCT 720
************************************************************
consensus_6280#0 GGTGAAGAGGATGTACGCCATCATTGACGAGCAGATCGAGCGGAGGATGCATGGCCGCAC 777
consensus_6280#1 GGTGAAGAGGATGTACGCCATCATTGACGAGCAGATCGAGCGGAGGATGCATGGCCGCAC 780
************************************************************
consensus_6280#0 CGCCGGCGAGCCACGCAAGAACGACCTGCTCGACGTGATGCTGGAGGAGGGGGAGAGTAA 837
consensus_6280#1 CGCCGGCGAGCCACGCAAGAACGACCTGCTCGACGTGATGCTGGAGGAGGGGGAGAGTAA 840
************************************************************
consensus_6280#0 AGAAGATAGCAACGAAATTAACCGTGATGCCATCCGTGGACTTTTTACAG-----ATTTG 892
consensus_6280#1 AGAAGATAGCAACGAAATTAACCGTGATGCCATCCGTGGACTTTTTACAGTGAGTACTTG 900
************************************************** * ***
consensus_6280#0 TTCA-CTGGTGGAGAGACGACTTCTCACACAATGGAGTGTGCAATGGCAGAACTATTGCA 951
consensus_6280#1 TACAACTTGCGGACGGATATTAATTTGTG-AATAAA------------------------ 935
* ** ** * *** ** * *** *
consensus_6280#0 GTGTCCAAACTCGATGAGAAGGGTGCACGAACTCAAGAGTGTGATAGGCAGCAAACAACA 1011
consensus_6280#1 ------------------------------------------------------------
consensus_6280#0 AATGGATGAACATGATATTACCAAACTGCCCTACCACCATACGAGGCCGAAGCCACGATA 1071
consensus_6280#1 ------------------------------------------------------------
consensus_6280#0 GAAATACAAGGTTACACCATTCCTAAGGGAGCGAAAGTGCTTATAAACTTGTGGGCGATC 1131
consensus_6280#1 ------------------------------------------------------------
consensus_6280#0 AATCGATGCGCCAACACATGGACCGAGCCAGATAAGTTCATGCCAGAGAGGTTCTACGAT 1191
consensus_6280#1 ------------------------------------------------------------
consensus_6280#0 AGTGACATTACTTTCATGGGGAGGGATTTTCAACTAATTCCTTTTGGAGCTGGAAAGCGC 1251
consensus_6280#1 ------------------------------------------------------------
consensus_6280#0 ATTTGCCTTGGATTGCCACTAGCTCACAGAATGGTCCATTTGATGCTTGGCTCGTTGCTA 1311
consensus_6280#1 ------------------------------------------------------------
consensus_6280#0 CACCGATTCACATGGACATTGCCAGCTGAGGCTGGGAAAAATGGAGTGGATATGAGGGAG 1371
consensus_6280#1 ------------------------------------------------------------
consensus_6280#0 AGGTTTGGGTTAACACTATCATTTGTTGCTCCCCTCTATGTAATAGCTCAAGAAATACAA 1431
consensus_6280#1 ------------------------------------------------------------
consensus_6280#0 TAAGAAACATGTGACTTTTTTATGATGAAGAATAGAAGAACATTACAAATGTAATGCGAT 1491
consensus_6280#1 ------------------------------------------------------------
consensus_6280#0 GATAGCTGCTCTAAATATGTAATCACCCAAGATATTTTCTG 1532
consensus_6280#1 -----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||