cluster # 6288

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Oryza sativa
cluster # 6288 cluster # 6288 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6288#0 length = 844 sequences # 3

consensus_6288#1 length = 461 sequences # 1

consensusID : consensus_6288#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 844
fasta sequence

                              [TTTTTTTTTTTTTCCCAAGACGGTAATACCGTATTTAAAGTTTAGCACCACACAATTATTTTTTATCAACATTTAAAATGAGTTGCTAAGCACCCCTCAAATAGCTAAGCCAACAAGCACACCGGCCAAATAGTTAAAATAGGGATCGTTTGCCATTTGCCACATGAGCAATAATGGGGGTTGCACATGTACGTTCAGCTTCATCTAGAGATTTTTTTTTCTTCAAATTGTAGCCATTGCGATTGACCTTTGCTGCTATCCATGGCATTAGAGATCTCCTGTAAAACCGTTCACATTGCTAGAGTTTTCTGACACTGTAAATAAAAAAGGCGAGGCACTTCCTCCGTTTTTCGATATCTGATCATCCATAGAAAGTTCAAGGGGATGTTCTATGCTAATAAACCGTCCGCCTTTTCCTCTACGCCTCAATTTTGCTTGCTTTTGGCGAGCCTCAACAAGGATCCTCTTTCGAATTGCTGCTACTTTATCTTCTGATCCAACAATTTTTCGACGTTGTCTCCTTCGGATAATTGCATGGTACTGCTTTGCATTCACATATATAGGCTCATCATCAGCATGTTCTGTAGGTAGTGGTAGCAGTGGAGTACACTTCATACCCTTGGTAGGTATGTGTTCAAGAGGTTGGTTGCA-CTCAGGTTTAGGATGCAAATTTTTAGCTTCTAGATTGACTAGAGATAATTCAGGTGACACTTTCCCAGGACCATCAAGCTTACGTTGATTGCCCTGNNTGCTTTCACCAAAACCCATTGTATCTGTGGGACTTGCAAGCAGGTGCTCTATGAGAGGAATGGATATCCCCTTGTTCTTCTTGAAATCCTTCTGN]

[+] EMBL CA762859             [TTTTTTTTTTTTTCCCAAGACGGTAATACCGTATTTAAAGTTTAGCACCACACAATTATTTTTTATCAACATTTAAAATGAGTTGCTAAGCACCCCTCAAATAGCTAAGCCAACAAGCACACCGGCCAAATAGTTAAAATAGGGATCGTTTGCCATTTGCCACATGAGCAATAATGGGGGTTGCACATGTACGTTCAGCTTCATCTAGAGATTTTTTTTTCTTCAAATTGTAGCCATTGCGATTGACCTTTGCTGCTATCCATGGCATTAGAGATCTCCTGTAAAACCGTTCACATTGCTAGAGTTTTCTGACACTGTAAATAAAAAAGGCGAGGCACTTCCTCCGTTTTTCGATATCTGATCATCCATAGAAAGTTCAAGGGGATGTTCTATGCTAATAAACCGTCCGCCTTTTCCTCTACGCCTCAATTTTGCTTGCTTTTGGCGAGCCTCAACAAGGATCCTCTTTCGAATTGCTGCTACTTTATCTTCTGATCCAACAATTTTTCGACGTTGACTCCTTCGGATAATTGCATGGCACTGCTTTGCATTCACATATATAGGCTCATCATCAGCATGTTCTGTAGGTAGTGGCAGCAGTGGAGTACACTCCATACCCTTGGTAAGGATGTGTTCAAGAGGTTGGTTGCACCTCA GTTTAGGAAGCAAA TTTTAGC TCTAGAATGACTA                                                                                                                                                        ]
[+] EMBL CA762858             [                               tttttttttTTTAGCACCACACGATTATTTTTTATCAACATTTAAAATGAGTTGCTAAGCACCCCTCAAATAGCTAAGCCAACAAGCACACCGGCCAAATAGTTAAGATAGGGATCATTTGCCATTTGCCACATGAGCAATAATGTGGGTTGCACATGTACGTTCAGCTTCATCTAGAGATTTTTTTTTCTTCAGATTGTAGCCCTTGCGATTGACCTTTGCTGCTATCCATGGCATTAGAGATCTCCTGTAAAACCGTTCACATTGCTAGAGTTTTCTGACACTGTAGATAAAGAAGGCGAGGCACTTCCTCCGTCTTTCGATATCTGATCATCCATAGAAAGTTCAAGGGGATGTTCTATGCTAATAAACCGTCCGCCTTTTCCTCTACGCCTCAATTTTGCTTGCTTTTGGCGAGCCTCAACAAGGATCCTCTTTCGAATTGCTGCTACTTTATCTTCTGATCCAACAATTTTTCGACGTTGTCTCCTTCGGATAATTGCATGGTACTGCTTTGCATTCACATATATAGGCTCATCATCAGCATGTTCTGTAGGTAGTGGTAGCAGTGGAGTACACTTCATACCCTTGGTAGGTATGTGTTCAAGAGGTTGGTTGCA CTCAGGTTTAGGATGCAAATTTTTAGCTTCTAGATTGACTAGAGATAATTCAGGTGACACTTTCCCAGGACC                                                                                                                         ]
[-] EMBL OSS10634A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TTCGACGTTGTCT CTTCGGATAATTGCATGGTACTGCTTTGCANTCACATATATAGGCTCATCATCAGCATGTTCTGTAGGTAGTGGTAGCAGTGGAGTACACTTCATACCCTTGGTAGGTATGTGTTCAATAGGTTGGTTGCA CTCAGGTTTAGGATGCAAATTTTTAGCTTCTAGATTGACTAGGGATAANTCAGTTGACACTTTCCCAGGACCATCAAGCTTACGTTGATTGCCCTGNNTGCTTTCACCAAAACCCATTGTATCTGTGGGACTTGCAAGCAGGTGCTCTATGAGAGGAATGGATATCCCCTTGTTCTTCTTGAAATCCTTCTGN]




>consensus_6288#0
TTTTTTTTTTTTTCCCAAGACGGTAATACCGTATTTAAAGTTTAGCACCACACAATTATT
TTTTATCAACATTTAAAATGAGTTGCTAAGCACCCCTCAAATAGCTAAGCCAACAAGCAC
ACCGGCCAAATAGTTAAAATAGGGATCGTTTGCCATTTGCCACATGAGCAATAATGGGGG
TTGCACATGTACGTTCAGCTTCATCTAGAGATTTTTTTTTCTTCAAATTGTAGCCATTGC
GATTGACCTTTGCTGCTATCCATGGCATTAGAGATCTCCTGTAAAACCGTTCACATTGCT
AGAGTTTTCTGACACTGTAAATAAAAAAGGCGAGGCACTTCCTCCGTTTTTCGATATCTG
ATCATCCATAGAAAGTTCAAGGGGATGTTCTATGCTAATAAACCGTCCGCCTTTTCCTCT
ACGCCTCAATTTTGCTTGCTTTTGGCGAGCCTCAACAAGGATCCTCTTTCGAATTGCTGC
TACTTTATCTTCTGATCCAACAATTTTTCGACGTTGTCTCCTTCGGATAATTGCATGGTA
CTGCTTTGCATTCACATATATAGGCTCATCATCAGCATGTTCTGTAGGTAGTGGTAGCAG
TGGAGTACACTTCATACCCTTGGTAGGTATGTGTTCAAGAGGTTGGTTGCACTCAGGTTT
AGGATGCAAATTTTTAGCTTCTAGATTGACTAGAGATAATTCAGGTGACACTTTCCCAGG
ACCATCAAGCTTACGTTGATTGCCCTGNNTGCTTTCACCAAAACCCATTGTATCTGTGGG
ACTTGCAAGCAGGTGCTCTATGAGAGGAATGGATATCCCCTTGTTCTTCTTGAAATCCTT
CTGN

consensusID : consensus_6288#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 461
fasta sequence

                              [AATTTTTCGACGTTGTCTCCTTCGGATAATTGCATGGTACTGCTTTGCATTCACATATATAGGCTCATCATCAGCATGTTCTGTAGGTAGTGGTAGCAGTGGAGTACACTTCATACCCTTGGTAGGTATGTGTTCTTTTTTAGAACTTTTAGGGGCNTTNGTNAAGGTGACCCTCTCTCTCCTCTCCTCTTTAATCTTGTGAGTGACGCTCTAGCTGNGNGGTTTGACAGTGCCNNANCTGAAGAGGTTGGTTGCACTCAGGTTTAGGATGCAAANNNTTAGCTTCTAGATTGACTAGAGATAATTCAGTTGACACTTTCCCAGGACCATCAAGCTTACGTTGATTGCCCTGGGTGCTTTCACCAAAACCCATTGTATCTGTGGGACTTGCAAGCAGGTGCTCTATGAGAGGAATGGATATCCCCTTGCTCTTCTTGAAATCCTTCTGTCGGTCCGCCTCC]

[-] EMBL CB097037             [AATTTTTCGACGTTGTCTCCTTCGGATAATTGCATGGTACTGCTTTGCATTCACATATATAGGCTCATCATCAGCATGTTCTGTAGGTAGTGGTAGCAGTGGAGTACACTTCATACCCTTGGTAGGTATGTGTTCTTTTTTAGAACTTTTAGGGGCNTTNGTNAAGGTGACCCTCTCTCTCCTCTCCTCTTTAATCTTGTGAGTGACGCTCTAGCTGNGNGGTTTGACAGTGCCNNANCTGAAGAGGTTGGTTGCACTCAGGTTTAGGATGCAAANNNTTAGCTTCTAGATTGACTAGAGATAATTCAGTTGACACTTTCCCAGGACCATCAAGCTTACGTTGATTGCCCTGGGTGCTTTCACCAAAACCCATTGTATCTGTGGGACTTGCAAGCAGGTGCTCTATGAGAGGAATGGATATCCCCTTGCTCTTCTTGAAATCCTTCTGTCGGTCCGCCTCC]




>consensus_6288#1
AATTTTTCGACGTTGTCTCCTTCGGATAATTGCATGGTACTGCTTTGCATTCACATATAT
AGGCTCATCATCAGCATGTTCTGTAGGTAGTGGTAGCAGTGGAGTACACTTCATACCCTT
GGTAGGTATGTGTTCTTTTTTAGAACTTTTAGGGGCNTTNGTNAAGGTGACCCTCTCTCT
CCTCTCCTCTTTAATCTTGTGAGTGACGCTCTAGCTGNGNGGTTTGACAGTGCCNNANCT
GAAGAGGTTGGTTGCACTCAGGTTTAGGATGCAAANNNTTAGCTTCTAGATTGACTAGAG
ATAATTCAGTTGACACTTTCCCAGGACCATCAAGCTTACGTTGATTGCCCTGGGTGCTTT
CACCAAAACCCATTGTATCTGTGGGACTTGCAAGCAGGTGCTCTATGAGAGGAATGGATA
TCCCCTTGCTCTTCTTGAAATCCTTCTGTCGGTCCGCCTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6288#0      TTTTTTTTTTTTTCCCAAGACGGTAATACCGTATTTAAAGTTTAGCACCACACAATTATT 60
consensus_6288#1      ------------------------------------------------------------
                                                                                  

consensus_6288#0      TTTTATCAACATTTAAAATGAGTTGCTAAGCACCCCTCAAATAGCTAAGCCAACAAGCAC 120
consensus_6288#1      ------------------------------------------------------------
                                                                                  

consensus_6288#0      ACCGGCCAAATAGTTAAAATAGGGATCGTTTGCCATTTGCCACATGAGCAATAATGGGGG 180
consensus_6288#1      ------------------------------------------------------------
                                                                                  

consensus_6288#0      TTGCACATGTACGTTCAGCTTCATCTAGAGATTTTTTTTTCTTCAAATTGTAGCCATTGC 240
consensus_6288#1      ------------------------------------------------------------
                                                                                  

consensus_6288#0      GATTGACCTTTGCTGCTATCCATGGCATTAGAGATCTCCTGTAAAACCGTTCACATTGCT 300
consensus_6288#1      ------------------------------------------------------------
                                                                                  

consensus_6288#0      AGAGTTTTCTGACACTGTAAATAAAAAAGGCGAGGCACTTCCTCCGTTTTTCGATATCTG 360
consensus_6288#1      ------------------------------------------------------------
                                                                                  

consensus_6288#0      ATCATCCATAGAAAGTTCAAGGGGATGTTCTATGCTAATAAACCGTCCGCCTTTTCCTCT 420
consensus_6288#1      ------------AATTTTTCGACGTTGTCTCCTTCGGATAA-TTGCATGG-TACTGCTTT 46
                                  ** **   *  * ***    * *  ****   *   *  *  * ** *

consensus_6288#0      ACGCCTCAATTTTGCTTGCTTTTGGCGAGCCTCAACAAGGATCCTCTTTCGAATTGCTGC 480
consensus_6288#1      GCAT-TCACATATATAGGCTCATCATCAGCATGTTCTGTAGGTAGTGGTAGCAGTGGAGT 105
                       *   ***  * *    ***  *    *** *   *            * * * **  * 

consensus_6288#0      -TACTTTATCTTCTGATCCAACAATTTTTCGACGTTGTCTCCTTCGGATAATTGCATGGT 539
consensus_6288#1      ACACTTCATACCCTTGGTAGGTATGTGTTCTTTTTTAGAACTTTTAGGGGCNTTNGTNAA 165
                        **** **   **        *  * ***    **    * **  *     *   *   

consensus_6288#0      ACTGCTTTGCATTCACATATATAGGCTCATCATCAGCATGTTCTGTAGGTAGTGGTAGCA 599
consensus_6288#1      GGTGACCCTCTCTCTCCT-------CTCCTCTTTA--ATCTTGTGAGTGACGCTCTAGCT 216
                        **     *  ** * *       *** ** * *  ** ** **   *  *   **** 

consensus_6288#0      GTGGAGTACACTTCATACCCTTGGTAG-GTATGTGTTCAAGAGGTTGGTTGCACTCAGGT 658
consensus_6288#1      GNGNGGT-------------TTGACAGTGCCNNANCTGAAGAGGTTGGTTGCACTCAGGT 263
                      * *  **             ***  ** *       * **********************

consensus_6288#0      TTAGGATGCAAATTTTTAGCTTCTAGATTGACTAGAGATAATTCAGGTGACACTTTCCCA 718
consensus_6288#1      TTAGGATGCAAANNNTTAGCTTCTAGATTGACTAGAGATAATTCAGTTGACACTTTCCCA 323
                      ************   ******************************* *************

consensus_6288#0      GGACCATCAAGCTTACGTTGATTGCCCTGNNTGCTTTCACCAAAACCCATTGTATCTGTG 778
consensus_6288#1      GGACCATCAAGCTTACGTTGATTGCCCTGGGTGCTTTCACCAAAACCCATTGTATCTGTG 383
                      *****************************  *****************************

consensus_6288#0      GGACTTGCAAGCAGGTGCTCTATGAGAGGAATGGATATCCCCTTGTTCTTCTTGAAATCC 838
consensus_6288#1      GGACTTGCAAGCAGGTGCTCTATGAGAGGAATGGATATCCCCTTGCTCTTCTTGAAATCC 443
                      ********************************************* **************

consensus_6288#0      TTCTGN------------ 844
consensus_6288#1      TTCTGTCGGTCCGCCTCC 461
                      *****