cluster # 6294

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Oryza sativa
cluster # 6294 cluster # 6294 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6294#0 length = 765 sequences # 1

consensus_6294#1 length = 527 sequences # 2
consensus_6294#2 length = 214 sequences # 1

consensusID : consensus_6294#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 765
fasta sequence

                              [TGGCGGGCTCCAGAGCTCACAAAGGGAACAAAGCTTGAGCACCACACGCGGAGGGCGGCCGCAACGAGAACAAGGTGGGATCCCCCGGGGCGAGCAGGAGCCAACACCGCGGCACCACCACGCGGCTCGCGGCTCCCGCTGCCTTCGTCTGGATCGCCTCCGCCCGCTCCGTTTGACCCTTTCGTCCTCTTCGCGGATCCGGCGCCGCGGCCGGCGCTCACGCGGGAACAGGTGAAGTACTGCAAGGAGGCGCTCAAGGTGTTGAAGAAGAAGCTCAAGCAAACAGCTGCCATTGACATTTCCAAGGAATTCCATGCTCTCCCGGACATACAGACAGCATTCCAGACGGGAAAATGTACTGCTGCTCAAAATCCTGCTAATAGGGAAAAAAACCGCTACAGTGATGTCATGCCATTTGATGAAACCCGGGTACGTCTAAAGCCCTCAGCAAGTGATCACCCTTCAAGCAATGAATACATCATTGCAAGCCTTATAGAGACTGATGACCAAGGTCAAAGTCATACCAAGTTCATTTCCACTCAAGGTCCCTTGGTCCAGACATTTGGGGATTTCTGGCAGATGGTCTACCAAAACCAGTGTCCTGTGATTGTCATGGTCACTTAATTGATGGTGCCAAGTGTGACCGGTATCTTCCACCGACCGAAGGAAAGAACGGGATTATGAANAATGCACTTGTTACATCNCCAGTTCCAATCCAATGGTGTCTACAATTCCCTTGTTTGGATGTCANCCAANTGATTCCTT]

[+] EMBL CA753555             [TGGCGGGCTCCAGAGCTCACAAAGGGAACAAAGCTTGAGCACCACACGCGGAGGGCGGCCGCAACGAGAACAAGGTGGGATCCCCCGGGGCGAGCAGGAGCCAACACCGCGGCACCACCACGCGGCTCGCGGCTCCCGCTGCCTTCGTCTGGATCGCCTCCGCCCGCTCCGTTTGACCCTTTCGTCCTCTTCGCGGATCCGGCGCCGCGGCCGGCGCTCACGCGGGAACAGGTGAAGTACTGCAAGGAGGCGCTCAAGGTGTTGAAGAAGAAGCTCAAGCAAACAGCTGCCATTGACATTTCCAAGGAATTCCATGCTCTCCCGGACATACAGACAGCATTCCAGACGGGAAAATGTACTGCTGCTCAAAATCCTGCTAATAGGGAAAAAAACCGCTACAGTGATGTCATGCCATTTGATGAAACCCGGGTACGTCTAAAGCCCTCAGCAAGTGATCACCCTTCAAGCAATGAATACATCATTGCAAGCCTTATAGAGACTGATGACCAAGGTCAAAGTCATACCAAGTTCATTTCCACTCAAGGTCCCTTGGTCCAGACATTTGGGGATTTCTGGCAGATGGTCTACCAAAACCAGTGTCCTGTGATTGTCATGGTCACTTAATTGATGGTGCCAAGTGTGACCGGTATCTTCCACCGACCGAAGGAAAGAACGGGATTATGAANAATGCACTTGTTACATCNCCAGTTCCAATCCAATGGTGTCTACAATTCCCTTGTTTGGATGTCANCCAANTGATTCCTT]




>consensus_6294#0
TGGCGGGCTCCAGAGCTCACAAAGGGAACAAAGCTTGAGCACCACACGCGGAGGGCGGCC
GCAACGAGAACAAGGTGGGATCCCCCGGGGCGAGCAGGAGCCAACACCGCGGCACCACCA
CGCGGCTCGCGGCTCCCGCTGCCTTCGTCTGGATCGCCTCCGCCCGCTCCGTTTGACCCT
TTCGTCCTCTTCGCGGATCCGGCGCCGCGGCCGGCGCTCACGCGGGAACAGGTGAAGTAC
TGCAAGGAGGCGCTCAAGGTGTTGAAGAAGAAGCTCAAGCAAACAGCTGCCATTGACATT
TCCAAGGAATTCCATGCTCTCCCGGACATACAGACAGCATTCCAGACGGGAAAATGTACT
GCTGCTCAAAATCCTGCTAATAGGGAAAAAAACCGCTACAGTGATGTCATGCCATTTGAT
GAAACCCGGGTACGTCTAAAGCCCTCAGCAAGTGATCACCCTTCAAGCAATGAATACATC
ATTGCAAGCCTTATAGAGACTGATGACCAAGGTCAAAGTCATACCAAGTTCATTTCCACT
CAAGGTCCCTTGGTCCAGACATTTGGGGATTTCTGGCAGATGGTCTACCAAAACCAGTGT
CCTGTGATTGTCATGGTCACTTAATTGATGGTGCCAAGTGTGACCGGTATCTTCCACCGA
CCGAAGGAAAGAACGGGATTATGAANAATGCACTTGTTACATCNCCAGTTCCAATCCAAT
GGTGTCTACAATTCCCTTGTTTGGATGTCANCCAANTGATTCCTT

consensusID : consensus_6294#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 527
fasta sequence

                              [CACCTCGGCTCCACCACGCGGCTCGCGGCTCCCGCTGCCTTCGTCTGGATCGCCTCCGCCCGCTCCGTTTGACCCTTTCGTCCTCTTCGCGGATCCGGCGCCGCGGCCGGCGCTCACGCGGGAACAGGTGAAGTACTGCAAGGAGGCGCTCAAGGTGTTGAAGAAGAAGCTCAAGCAAACAGCTGCCATTGACATTTCCAAGGAATTCCATGCTCTCCCGGACATACAGACAGCATTCCAGACGGGAAAATTTACTGCTGCTCAAAATCCTGCTAATAGGGAAAAAAACCGCTACAGTGATGTCATGCCATTTGATGAAACCCGGGTACGTTTAAAGCCCTCAGCAAGTGATCACCCTTCAAGCAATGAATACATCAATGCAAGCCTTATAGAGACTGATGACCAAGGTCAAAGTCATACAAAGTTCATTTCCACTCAAGGTCCCTTGGTCAAGACATTTGGGGATTTCTGGCNNNNNGTNNANNNAAACCAGTNTCCNGTGANNGTTATGNTNNNNNNNNNNGATN]

[+] EMBL CF197197             [CACCTCGGCTCCACCACGCGGCTCGCGGCTCCCGCTGCCTTCGTCTGGATCGCCTCCGCCCGCTCCGTTTGACCCTTTCGTCCTCTTCGCGGATCCGGCGCCGCGGCCGGCGCTCACGCGGGAACAGGTGAAGTACTGCAAGGAGGCGCTCAAGGTGTTGAAGAAGAAGCTCAAGCAAACAGCTGCCATTGACATTTCCAAGGAATTCCATGCTCTCCCGGACATACAGACAGCATTCCAGACGGGAAAATTTACTGCTGCTCAAAATCCTGCTAATAGGGAAAAAAACCGCTACAGTGATGTCATGCCATTTGATGAAACCCGGGTACGTTTAAAGCCCTCAGCAAGTGATCACCCTTCAAGCAATGAATACATCAATGCAAGCCTTATAGAGACTGATGACCAAGGTCAAAGTCATACAAAGTTCATTTCCACTCAAGGTCCCTTGGTCAAGACATTTGGGGATTTCTGGCNNNNNGTNNANNNAAACCAGTNTCCNGTGANNGTTATGNTNNNNNNNNNNGATN]
[+] EMBL OSR21562A            [                                                           CCGCTCCGTTTGACCCTTTCGTCCTCTTCGCGGATCCGGCGCCGCGGCCGGCGCTCACGCGGGAACAGGTGAAGTACTGCAAGGAGGCGCTCAAGGTGTTGAAGAAGAAGCTCAAGCAAACAGCTGCCATTGACATTTCCAAGGAATTCCATGCTCTCCCGGACATACAGACAGCATTCCAGACGGGAAAATTTACTGCTGCTCAAAATCCTGCTAATAGGGAAAAAAACCGCTACAGTGATGTCATGCCATTTGATGAAACCCGGGTACGTTTAAAGCCCTCAGCAAGTGATCACCCTTCAAGCAATGAATACATCAATGCAAGCCT                                                                                                                                            ]




>consensus_6294#1
CACCTCGGCTCCACCACGCGGCTCGCGGCTCCCGCTGCCTTCGTCTGGATCGCCTCCGCC
CGCTCCGTTTGACCCTTTCGTCCTCTTCGCGGATCCGGCGCCGCGGCCGGCGCTCACGCG
GGAACAGGTGAAGTACTGCAAGGAGGCGCTCAAGGTGTTGAAGAAGAAGCTCAAGCAAAC
AGCTGCCATTGACATTTCCAAGGAATTCCATGCTCTCCCGGACATACAGACAGCATTCCA
GACGGGAAAATTTACTGCTGCTCAAAATCCTGCTAATAGGGAAAAAAACCGCTACAGTGA
TGTCATGCCATTTGATGAAACCCGGGTACGTTTAAAGCCCTCAGCAAGTGATCACCCTTC
AAGCAATGAATACATCAATGCAAGCCTTATAGAGACTGATGACCAAGGTCAAAGTCATAC
AAAGTTCATTTCCACTCAAGGTCCCTTGGTCAAGACATTTGGGGATTTCTGGCNNNNNGT
NNANNNAAACCAGTNTCCNGTGANNGTTATGNTNNNNNNNNNNGATN

consensusID : consensus_6294#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 214
fasta sequence

                              [GCAAAAAACCGTACAGTGATGTCATGCCATATTGATGAAACCCGTGTACGGTTAAAGCCCTCAGCAAGTGATCACCTTCAAGCAATGAATACATCATTGCAAGCTCATAGAGACTGTTGACCAAGGTCAAAGTCATACAAAGTTCATTTCCACTCAAGGTCCCTTCTTCAGGACATTTGGGGATTCCTGGCAGATGGTCTACGAAAACCAGTCT]

[+] EMBL OS38130              [GCAAAAAACCGTACAGTGATGTCATGCCATATTGATGAAACCCGTGTACGGTTAAAGCCCTCAGCAAGTGATCACCTTCAAGCAATGAATACATCATTGCAAGCTCATAGAGACTGTTGACCAAGGTCAAAGTCATACAAAGTTCATTTCCACTCAAGGTCCCTTCTTCAGGACATTTGGGGATTCCTGGCAGATGGTCTACGAAAACCAGTCT]




>consensus_6294#2
GCAAAAAACCGTACAGTGATGTCATGCCATATTGATGAAACCCGTGTACGGTTAAAGCCC
TCAGCAAGTGATCACCTTCAAGCAATGAATACATCATTGCAAGCTCATAGAGACTGTTGA
CCAAGGTCAAAGTCATACAAAGTTCATTTCCACTCAAGGTCCCTTCTTCAGGACATTTGG
GGATTCCTGGCAGATGGTCTACGAAAACCAGTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6294#0      TGGCGGGCTCCAGAGCTCACAAAGGGAACAAAGCTTGAGCACCACACGCGGAGGGCGGCC 60
consensus_6294#2      ------------------------------------------------------------
consensus_6294#1      ------------------------------------------------------------
                                                                                  

consensus_6294#0      GCAACGAGAACAAGGTGGGATCCCCCGGGGCGAGCAGGAGCCAACACCGCGGCACCACCA 120
consensus_6294#2      ------------------------------------------------------------
consensus_6294#1      --------------------------------------------CACCTCGGCTCCACCA 16
                                                                                  

consensus_6294#0      CGCGGCTCGCGGCTCCCGCTGCCTTCGTCTGGATCGCCTCCGCCCGCTCCGTTTGACCCT 180
consensus_6294#2      ------------------------------------------------------------
consensus_6294#1      CGCGGCTCGCGGCTCCCGCTGCCTTCGTCTGGATCGCCTCCGCCCGCTCCGTTTGACCCT 76
                                                                                  

consensus_6294#0      TTCGTCCTCTTCGCGGATCCGGCGCCGCGGCCGGCGCTCACGCGGGAACAGGTGAAGTAC 240
consensus_6294#2      ------------------------------------------------------------
consensus_6294#1      TTCGTCCTCTTCGCGGATCCGGCGCCGCGGCCGGCGCTCACGCGGGAACAGGTGAAGTAC 136
                                                                                  

consensus_6294#0      TGCAAGGAGGCGCTCAAGGTGTTGAAGAAGAAGCTCAAGCAAACAGCTGCCATTGACATT 300
consensus_6294#2      ------------------------------------------------------------
consensus_6294#1      TGCAAGGAGGCGCTCAAGGTGTTGAAGAAGAAGCTCAAGCAAACAGCTGCCATTGACATT 196
                                                                                  

consensus_6294#0      TCCAAGGAATTCCATGCTCTCCCGGACATACAGACAGCATTCCAGACGGGAAAATGTACT 360
consensus_6294#2      ------------------------------------------------------------
consensus_6294#1      TCCAAGGAATTCCATGCTCTCCCGGACATACAGACAGCATTCCAGACGGGAAAATTTACT 256
                                                                                  

consensus_6294#0      GCTGCTCAAAATCCTGCTAATAGGGAAAAAAACCGCTACAGTGATGTCATGCCAT-TTGA 419
consensus_6294#2      ------------------------GCAAAAAACCG-TACAGTGATGTCATGCCATATTGA 35
consensus_6294#1      GCTGCTCAAAATCCTGCTAATAGGGAAAAAAACCGCTACAGTGATGTCATGCCAT-TTGA 315
                                              * ********* ******************* ****

consensus_6294#0      TGAAACCCGGGTACGTCTAAAGCCCTCAGCAAGTGATCACCCTTCAAGCAATGAATACAT 479
consensus_6294#2      TGAAACCCGTGTACGGTTAAAGCCCTCAGCAAGTGATCACC-TTCAAGCAATGAATACAT 94
consensus_6294#1      TGAAACCCGGGTACGTTTAAAGCCCTCAGCAAGTGATCACCCTTCAAGCAATGAATACAT 375
                      ********* *****  ************************ ******************

consensus_6294#0      CATTGCAAGCCTTATAGAGACTGATGACCAAGGTCAAAGTCATACCAAGTTCATTTCCAC 539
consensus_6294#2      CATTGCAAGC-TCATAGAGACTGTTGACCAAGGTCAAAGTCATACAAAGTTCATTTCCAC 153
consensus_6294#1      CAATGCAAGCCTTATAGAGACTGATGACCAAGGTCAAAGTCATACAAAGTTCATTTCCAC 435
                      ** ******* * ********** ********************* **************

consensus_6294#0      TCAAGGTCCCTTGGTCCAGACATTTGGGGATTTCTGGCAGATGGTCTACCAAAACCAGTG 599
consensus_6294#2      TCAAGGTCCCTTCTTCAGGACATTTGGGGATTCCTGGCAGATGGTCTACGAAAACCAGTC 213
consensus_6294#1      TCAAGGTCCCTTGGTCAAGACATTTGGGGATTTCTGGCNNNNNGTNNANNNAAACCAGTN 495
                      ************  **  ************** *****     **  *   ******** 

consensus_6294#0      TCCTGTGATTGTCATGGTCACTTAATTGATGGTGCCAAGTGTGACCGGTATCTTCCACCG 659
consensus_6294#2      T----------------------------------------------------------- 214
consensus_6294#1      TCCNGTGANNGTTATGNTNNNNNNNNNNGATN---------------------------- 527
                      *                                                           

consensus_6294#0      ACCGAAGGAAAGAACGGGATTATGAANAATGCACTTGTTACATCNCCAGTTCCAATCCAA 719
consensus_6294#2      ------------------------------------------------------------
consensus_6294#1      ------------------------------------------------------------
                                                                                  

consensus_6294#0      TGGTGTCTACAATTCCCTTGTTTGGATGTCANCCAANTGATTCCTT 765
consensus_6294#2      ----------------------------------------------
consensus_6294#1      ----------------------------------------------