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Oryza sativa
cluster # 6296 cluster # 6296       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6296#0 length = 2342 sequences # 1  
consensus_6296#1 length = 1254 sequences # 2  
consensus_6296#2 length = 368 sequences # 1  

consensusID : consensus_6296#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 2342
fasta sequence
                              [CTCTCCCTCCCGAGGCCTTGGCCGGCGCGAGGTCGAGGAGAGGAAGCTCCCATGGCGGAGGAGGCGGCGCAGGAGCAGCAGACGGACCCCGCCGCCTCCCGCCCCGTCCGCTGCATCGTCAAACTCGGTACTCGCGCGCGCTCCGTCGCTCCCTTGTTTCCTCTCTGCTCCTCTTTAGCAGCTTCGATGGCGCAGGTGGAGCGGCCATCACGAACAAGGGAGAGCTGGAGAGCATCGACGCGGCGAGCTTGCGGTCGGCGTGCGCGCAGCTGCGGCAGGCCATGTCCCACGGCGGCGCGGCGGGGAAGGTTGTGGGGATGGACTGGAGCAGACGGCCCGGCGATCCGACCGGCCCGGTCGTGGATGTGGAGGGCTTGTCGGAGATGGGAGGCTTGGGGCTCGACTCCAACTTCGTCGTCGTCCATGGTGCCGGTATGCATGGCTCCTCATCTGAACTAACAACTGTGCCTATCTGTCATTTTGTATTGCTGATGAGTTCATGAGCAGAACTGGGGGATCGGTGGTCGGTTGGGATCTGGAGACGATAGGATCAGCTTGATTGCTGTATTTTGGTTTCAGAATACTACTACGGCTAAGTGAAAATTTGGTGCGAAACTGTGAACCAAGTACCATTCTCAATGTGTATCAATGACAAGCAATTGTAAACATTGTTCACGACCTGCTTAACCGGTCTATATTCGGAACGTAGCTGACCTTCGTGGAATATATTTGAATAAATCTGTTTTGATTGGTAGACACCCTGAAAATATAGTTTTAGATCATAGACCATCGGGCCCGGCTTTTATAGAAAGCCAGAAGCGGCACAGTGGTGGGGGAGACCCACTTACAAGAGTTCAGCACAAAAACACAGAAACAGGGCAGAAACCAAACCATGCCAAGGGATACAAAGGGGTTGAAGCTAAGCGACCAAAAGCAAAAGACAACTCAGGCACCTCTAAACAACTCAACAGATAACAGCTAACCAACAGCACCACAGAAAAAGCATCAGTGCTTACCCTACTCCAGCTCTGGGAGGACCAAGGGAGGAGACTGCTTCCATAAGTTTGCTAGCCATGGCCTCCAGCTTCTCAGCATCCTTCCTGCTTAGGACTTTCCACTGCATCAATAAAGATTTGATTTGAAAATGTAGTCCTAGGCAACCAGGGGAGAATAAAGAAAATAGCTCACACTTCATGATGCCTGTAATACTGGCCGACTATAATTGGCCTGTTGTAGTTTAAAGGATACAGCCCACGATTTTGGTGGTGTAATAGCTGACTACCTACATCTGCTACCTCAGGGTCTTTTGGTCACTTCCAAGCAAGTAGATCTGGAGTCCATAAAGGGGGTCTTCATTCAACACTTGTGAAGGCTGGCTTTGTGGCTACAAGAATTTCAGTCACTTCTCTCAACCAGGAGATTGTTAGAGCTCTTGCAAGAGAAGGAATACCGTCTGTTGGGATGTCACCGTTTGCTTGTGGATGGTCTACTAAGCAAAGAAATGTGAGAAAGCAAACAATTAACTAAATTTCTTCTGTTTCTTTGGACATGGACTTGACATTGCAAAGTTCTTGAAGATCTATGTCTAATCCTATCAACAGAGATGCCCTTTGATTTTTTACCTTCCAGTTTTGCACTTACAGCTTGAATCAGTGGATGCTTCTCAAATCATGCTATCACTCCATGTTGGCTTTGTCCCTGTTTTGCATGGAGATGCTGTTCTTGATGAATTGCTGGACTGCACCATTTTGAGTGGGGATGTCATTATACGCCATCTTGCACAGCTTCTGAGTCCAAAATATGTTGTATTTCTGACAGATGTCCATGGAGTATTTGATCGTCCTCCATCAGACCCGAATGCAGTACTTCTCAGAGAGATAGCGGTGGATGAAAATGGCAGCTGGTCGATTGTAAAACCAGCATTGAAAGGCAACAAGAAAGGAGTGGAGATATCTGTAGCTGCACATGACACCACTGGCGGAATGGAGACCAAAATATTGGAAGCTGCTGCGATAGCTAGGCTTGGAGTTGATGTGTATATTACAAAGGTTGGTACAGAACATTCACTGAGAGCCTTAAAAGGGGACACGAGCTCAGAAGATTGGCTTGGAACCGTCATACGATCTTCCAGATAGAATTCTTGGCCTATCATTTTCGGGAGTAAGCATCCATTGGCAAATATTTTATCACCATTATTGTAGGACGATTGTGAAGCTATGAGCTGATCACCTGTCAAATGATTCATGGGGTTATTATTGCTGAATCTCATAGCAGACAATGAGGCAGAGCTCGGTGTTATGCTACAAGTAACAGTCCTACGACATTATAATAAGTAACCTTAT]

[+] EMBL AK068053             [CTCTCCCTCCCGAGGCCTTGGCCGGCGCGAGGTCGAGGAGAGGAAGCTCCCATGGCGGAGGAGGCGGCGCAGGAGCAGCAGACGGACCCCGCCGCCTCCCGCCCCGTCCGCTGCATCGTCAAACTCGGTACTCGCGCGCGCTCCGTCGCTCCCTTGTTTCCTCTCTGCTCCTCTTTAGCAGCTTCGATGGCGCAGGTGGAGCGGCCATCACGAACAAGGGAGAGCTGGAGAGCATCGACGCGGCGAGCTTGCGGTCGGCGTGCGCGCAGCTGCGGCAGGCCATGTCCCACGGCGGCGCGGCGGGGAAGGTTGTGGGGATGGACTGGAGCAGACGGCCCGGCGATCCGACCGGCCCGGTCGTGGATGTGGAGGGCTTGTCGGAGATGGGAGGCTTGGGGCTCGACTCCAACTTCGTCGTCGTCCATGGTGCCGGTATGCATGGCTCCTCATCTGAACTAACAACTGTGCCTATCTGTCATTTTGTATTGCTGATGAGTTCATGAGCAGAACTGGGGGATCGGTGGTCGGTTGGGATCTGGAGACGATAGGATCAGCTTGATTGCTGTATTTTGGTTTCAGAATACTACTACGGCTAAGTGAAAATTTGGTGCGAAACTGTGAACCAAGTACCATTCTCAATGTGTATCAATGACAAGCAATTGTAAACATTGTTCACGACCTGCTTAACCGGTCTATATTCGGAACGTAGCTGACCTTCGTGGAATATATTTGAATAAATCTGTTTTGATTGGTAGACACCCTGAAAATATAGTTTTAGATCATAGACCATCGGGCCCGGCTTTTATAGAAAGCCAGAAGCGGCACAGTGGTGGGGGAGACCCACTTACAAGAGTTCAGCACAAAAACACAGAAACAGGGCAGAAACCAAACCATGCCAAGGGATACAAAGGGGTTGAAGCTAAGCGACCAAAAGCAAAAGACAACTCAGGCACCTCTAAACAACTCAACAGATAACAGCTAACCAACAGCACCACAGAAAAAGCATCAGTGCTTACCCTACTCCAGCTCTGGGAGGACCAAGGGAGGAGACTGCTTCCATAAGTTTGCTAGCCATGGCCTCCAGCTTCTCAGCATCCTTCCTGCTTAGGACTTTCCACTGCATCAATAAAGATTTGATTTGAAAATGTAGTCCTAGGCAACCAGGGGAGAATAAAGAAAATAGCTCACACTTCATGATGCCTGTAATACTGGCCGACTATAATTGGCCTGTTGTAGTTTAAAGGATACAGCCCACGATTTTGGTGGTGTAATAGCTGACTACCTACATCTGCTACCTCAGGGTCTTTTGGTCACTTCCAAGCAAGTAGATCTGGAGTCCATAAAGGGGGTCTTCATTCAACACTTGTGAAGGCTGGCTTTGTGGCTACAAGAATTTCAGTCACTTCTCTCAACCAGGAGATTGTTAGAGCTCTTGCAAGAGAAGGAATACCGTCTGTTGGGATGTCACCGTTTGCTTGTGGATGGTCTACTAAGCAAAGAAATGTGAGAAAGCAAACAATTAACTAAATTTCTTCTGTTTCTTTGGACATGGACTTGACATTGCAAAGTTCTTGAAGATCTATGTCTAATCCTATCAACAGAGATGCCCTTTGATTTTTTACCTTCCAGTTTTGCACTTACAGCTTGAATCAGTGGATGCTTCTCAAATCATGCTATCACTCCATGTTGGCTTTGTCCCTGTTTTGCATGGAGATGCTGTTCTTGATGAATTGCTGGACTGCACCATTTTGAGTGGGGATGTCATTATACGCCATCTTGCACAGCTTCTGAGTCCAAAATATGTTGTATTTCTGACAGATGTCCATGGAGTATTTGATCGTCCTCCATCAGACCCGAATGCAGTACTTCTCAGAGAGATAGCGGTGGATGAAAATGGCAGCTGGTCGATTGTAAAACCAGCATTGAAAGGCAACAAGAAAGGAGTGGAGATATCTGTAGCTGCACATGACACCACTGGCGGAATGGAGACCAAAATATTGGAAGCTGCTGCGATAGCTAGGCTTGGAGTTGATGTGTATATTACAAAGGTTGGTACAGAACATTCACTGAGAGCCTTAAAAGGGGACACGAGCTCAGAAGATTGGCTTGGAACCGTCATACGATCTTCCAGATAGAATTCTTGGCCTATCATTTTCGGGAGTAAGCATCCATTGGCAAATATTTTATCACCATTATTGTAGGACGATTGTGAAGCTATGAGCTGATCACCTGTCAAATGATTCATGGGGTTATTATTGCTGAATCTCATAGCAGACAATGAGGCAGAGCTCGGTGTTATGCTACAAGTAACAGTCCTACGACATTATAATAAGTAACCTTAT]


>consensus_6296#0 CTCTCCCTCCCGAGGCCTTGGCCGGCGCGAGGTCGAGGAGAGGAAGCTCCCATGGCGGAG GAGGCGGCGCAGGAGCAGCAGACGGACCCCGCCGCCTCCCGCCCCGTCCGCTGCATCGTC AAACTCGGTACTCGCGCGCGCTCCGTCGCTCCCTTGTTTCCTCTCTGCTCCTCTTTAGCA GCTTCGATGGCGCAGGTGGAGCGGCCATCACGAACAAGGGAGAGCTGGAGAGCATCGACG CGGCGAGCTTGCGGTCGGCGTGCGCGCAGCTGCGGCAGGCCATGTCCCACGGCGGCGCGG CGGGGAAGGTTGTGGGGATGGACTGGAGCAGACGGCCCGGCGATCCGACCGGCCCGGTCG TGGATGTGGAGGGCTTGTCGGAGATGGGAGGCTTGGGGCTCGACTCCAACTTCGTCGTCG TCCATGGTGCCGGTATGCATGGCTCCTCATCTGAACTAACAACTGTGCCTATCTGTCATT TTGTATTGCTGATGAGTTCATGAGCAGAACTGGGGGATCGGTGGTCGGTTGGGATCTGGA GACGATAGGATCAGCTTGATTGCTGTATTTTGGTTTCAGAATACTACTACGGCTAAGTGA AAATTTGGTGCGAAACTGTGAACCAAGTACCATTCTCAATGTGTATCAATGACAAGCAAT TGTAAACATTGTTCACGACCTGCTTAACCGGTCTATATTCGGAACGTAGCTGACCTTCGT GGAATATATTTGAATAAATCTGTTTTGATTGGTAGACACCCTGAAAATATAGTTTTAGAT CATAGACCATCGGGCCCGGCTTTTATAGAAAGCCAGAAGCGGCACAGTGGTGGGGGAGAC CCACTTACAAGAGTTCAGCACAAAAACACAGAAACAGGGCAGAAACCAAACCATGCCAAG GGATACAAAGGGGTTGAAGCTAAGCGACCAAAAGCAAAAGACAACTCAGGCACCTCTAAA CAACTCAACAGATAACAGCTAACCAACAGCACCACAGAAAAAGCATCAGTGCTTACCCTA CTCCAGCTCTGGGAGGACCAAGGGAGGAGACTGCTTCCATAAGTTTGCTAGCCATGGCCT CCAGCTTCTCAGCATCCTTCCTGCTTAGGACTTTCCACTGCATCAATAAAGATTTGATTT GAAAATGTAGTCCTAGGCAACCAGGGGAGAATAAAGAAAATAGCTCACACTTCATGATGC CTGTAATACTGGCCGACTATAATTGGCCTGTTGTAGTTTAAAGGATACAGCCCACGATTT TGGTGGTGTAATAGCTGACTACCTACATCTGCTACCTCAGGGTCTTTTGGTCACTTCCAA GCAAGTAGATCTGGAGTCCATAAAGGGGGTCTTCATTCAACACTTGTGAAGGCTGGCTTT GTGGCTACAAGAATTTCAGTCACTTCTCTCAACCAGGAGATTGTTAGAGCTCTTGCAAGA GAAGGAATACCGTCTGTTGGGATGTCACCGTTTGCTTGTGGATGGTCTACTAAGCAAAGA AATGTGAGAAAGCAAACAATTAACTAAATTTCTTCTGTTTCTTTGGACATGGACTTGACA TTGCAAAGTTCTTGAAGATCTATGTCTAATCCTATCAACAGAGATGCCCTTTGATTTTTT ACCTTCCAGTTTTGCACTTACAGCTTGAATCAGTGGATGCTTCTCAAATCATGCTATCAC TCCATGTTGGCTTTGTCCCTGTTTTGCATGGAGATGCTGTTCTTGATGAATTGCTGGACT GCACCATTTTGAGTGGGGATGTCATTATACGCCATCTTGCACAGCTTCTGAGTCCAAAAT ATGTTGTATTTCTGACAGATGTCCATGGAGTATTTGATCGTCCTCCATCAGACCCGAATG CAGTACTTCTCAGAGAGATAGCGGTGGATGAAAATGGCAGCTGGTCGATTGTAAAACCAG CATTGAAAGGCAACAAGAAAGGAGTGGAGATATCTGTAGCTGCACATGACACCACTGGCG GAATGGAGACCAAAATATTGGAAGCTGCTGCGATAGCTAGGCTTGGAGTTGATGTGTATA TTACAAAGGTTGGTACAGAACATTCACTGAGAGCCTTAAAAGGGGACACGAGCTCAGAAG ATTGGCTTGGAACCGTCATACGATCTTCCAGATAGAATTCTTGGCCTATCATTTTCGGGA GTAAGCATCCATTGGCAAATATTTTATCACCATTATTGTAGGACGATTGTGAAGCTATGA GCTGATCACCTGTCAAATGATTCATGGGGTTATTATTGCTGAATCTCATAGCAGACAATG AGGCAGAGCTCGGTGTTATGCTACAAGTAACAGTCCTACGACATTATAATAAGTAACCTT AT



consensusID : consensus_6296#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1254
fasta sequence
                              [CCTCCCGAGGCCTTGGCCGGCGCGAGGTCGAGGAGAGGAAGCTCCCATGGCGGAGGAGGCGGCGCAGGAGCAGCAGACGGACCCCGCCGCCTCCCGCCCCGTCCGCTGCATCGTCAAACTCGGTGGAGCGGCCATCACGAACAAGGGAGAGCTGGAGAGCATCGACGCGGCGAGCTTGCGGTCGGCGTGCGCGCAGCTGCGGCAGGCCATGTCCCACGGCGGCGCGGCGGGGAAGGTTGTGGGGATGGACTGGAGCAGACGGCCCGGCGATCCGACCGGCCCGGTCGTGGATGTGGAGGGCTTGTCGGAGATGGGAGGCTTGGGGCTCGACTCCAACTTCGTCGTCGTCCATGGTGCCGGGTCTTTTGGTCACTTCCAAGCAAGTAGATCTGGAGTCCATAAAGGGGGTCTTCATTCAACACTTGTGAAGGCTGGCTTTGTGGCTACAAGAATTTCAGTCACTTCTCTCAACCAGGAGATTGTTAGAGCTCTTGCAAGAGAAGGAATACCGTCTGTTGGGATGTCACCGTTTGCTTGTGGATGGTCTACTAAGCAAAGAAATCTTGAATCAGTGGATGCTTCTCAAATCATGCTATCACTCCATGTTGGCTTTGTCCCTGTTTTGCATGGAGATGCTGTTCTTGATGAATTGCTGGACTGCACCATTTTGAGTGGGGATGTCATTATACGCCATCTTGCACAGCTTCTGAGTCCAAAATATGTTGTATTTCTGACAGATGTCCATGGAGTATTTGATCGTCCTCCATCAGACCCGAATGCAGTACTTCTCAGAGAGATAGCGGTGGATGAAAATGGCAGCTGGTCGATTGTAAAACCAGCATTGAAAGGCAACAAGAAAGGAGTGGAGATATCTGTAGCTGCACATGACACCACTGGCGGAATGGAGACCAAAATATTGGAAGCTGCTGCGATAGCTA-GGCTTGGAGTTGATGTGTATATTACAAAGGTTGGTACAGAACATTCACTGAGAGCCTTAAAAGGGGACACGAGCTCAGAAGATTGGCTTGGAACCGTCATACGATCTTCCAGATAGAATTCTTGGCCTATCATTTTCGGGAGTAAGCATCCATTGGCAAATATTTTATCACCATTATTGTAGGACGATTGTGAAGCTATGAGCTGATCACCTGTCAAATGATTCATGGGGTTATTATTGCTGAATCTCATAGCAGACAATGAGGCAGAGCTCGGTGTTATGCTACAAGTAACAGTCCTACGACATTATAATAAGTA]

[+] EMBL AK060621             [CCTCCCGAGGCCTTGGCCGGCGCGAGGTCGAGGAGAGGAAGCTCCCATGGCGGAGGAGGCGGCGCAGGAGCAGCAGACGGACCCCGCCGCCTCCCGCCCCGTCCGCTGCATCGTCAAACTCGGTGGAGCGGCCATCACGAACAAGGGAGAGCTGGAGAGCATCGACGCGGCGAGCTTGCGGTCGGCGTGCGCGCAGCTGCGGCAGGCCATGTCCCACGGCGGCGCGGCGGGGAAGGTTGTGGGGATGGACTGGAGCAGACGGCCCGGCGATCCGACCGGCCCGGTCGTGGATGTGGAGGGCTTGTCGGAGATGGGAGGCTTGGGGCTCGACTCCAACTTCGTCGTCGTCCATGGTGCCGGGTCTTTTGGTCACTTCCAAGCAAGTAGATCTGGAGTCCATAAAGGGGGTCTTCATTCAACACTTGTGAAGGCTGGCTTTGTGGCTACAAGAATTTCAGTCACTTCTCTCAACCAGGAGATTGTTAGAGCTCTTGCAAGAGAAGGAATACCGTCTGTTGGGATGTCACCGTTTGCTTGTGGATGGTCTACTAAGCAAAGAAATCTTGAATCAGTGGATGCTTCTCAAATCATGCTATCACTCCATGTTGGCTTTGTCCCTGTTTTGCATGGAGATGCTGTTCTTGATGAATTGCTGGACTGCACCATTTTGAGTGGGGATGTCATTATACGCCATCTTGCACAGCTTCTGAGTCCAAAATATGTTGTATTTCTGACAGATGTCCATGGAGTATTTGATCGTCCTCCATCAGACCCGAATGCAGTACTTCTCAGAGAGATAGCGGTGGATGAAAATGGCAGCTGGTCGATTGTAAAACCAGCATTGAAAGGCAACAAGAAAGGAGTGGAGATATCTGTAGCTGCACATGACACCACTGGCGGAATGGAGACCAAAATATTGGAAGCTGCTGCGATAGCTA GGCTTGGAGTTGATGTGTATATTACAAAGGTTGGTACAGAACATTCACTGAGAGCCTTAAAAGGGGACACGAGCTCAGAAGATTGGCTTGGAACCGTCATACGATCTTCCAGATAGAATTCTTGGCCTATCATTTTCGGGAGTAAGCATCCATTGGCAAATATTTTATCACCATTATTGTAGGACGATTGTGAAGCTATGAGCTGATCACCTGTCAAATGATTCATGGGGTTATTATTGCTGAATCTCATAGCAGACAATGAGGCAGAGCTCGGTGTTATGCTACAAGTAACAGTCCTACGACATTATAATAAGTA]
[+] EMBL OSC17381             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ATCGTCCTCCATCAGACCCGAATGCAGTACTTCTCAGAGAGATAGCGGTGGATGAAAATGGCAGCTGGTCGATTGTAAAACCAGCATTGAAAGGCAACAAGAAAGGAGTGGAGATATCTGTAGCTGCACATGACACCACTGGCGGAATGGAGACCAAAATATTGGAAGCTGCTGCGATA NTAGGGCTTGGAGTTGATGTGTATATTACAAAGGTTGGTACAGAACATTCACTGAGAGCCTTAAAAGGGGACACGAGCTCAGAAGATTGGCTTGGAACCGTCATACGATCTTCCAGATAGAATTCTTGGCCTATCATTTTCGGGAGTAAGCATCCNTTGGCAAATATTTTATCACCATTATTGTAGGACGGTTGTTAAG TATGAGCTGATCACCTGTCAAATGATTCATGGGG TATTATTGCT                                                                           ]


>consensus_6296#1 CCTCCCGAGGCCTTGGCCGGCGCGAGGTCGAGGAGAGGAAGCTCCCATGGCGGAGGAGGC GGCGCAGGAGCAGCAGACGGACCCCGCCGCCTCCCGCCCCGTCCGCTGCATCGTCAAACT CGGTGGAGCGGCCATCACGAACAAGGGAGAGCTGGAGAGCATCGACGCGGCGAGCTTGCG GTCGGCGTGCGCGCAGCTGCGGCAGGCCATGTCCCACGGCGGCGCGGCGGGGAAGGTTGT GGGGATGGACTGGAGCAGACGGCCCGGCGATCCGACCGGCCCGGTCGTGGATGTGGAGGG CTTGTCGGAGATGGGAGGCTTGGGGCTCGACTCCAACTTCGTCGTCGTCCATGGTGCCGG GTCTTTTGGTCACTTCCAAGCAAGTAGATCTGGAGTCCATAAAGGGGGTCTTCATTCAAC ACTTGTGAAGGCTGGCTTTGTGGCTACAAGAATTTCAGTCACTTCTCTCAACCAGGAGAT TGTTAGAGCTCTTGCAAGAGAAGGAATACCGTCTGTTGGGATGTCACCGTTTGCTTGTGG ATGGTCTACTAAGCAAAGAAATCTTGAATCAGTGGATGCTTCTCAAATCATGCTATCACT CCATGTTGGCTTTGTCCCTGTTTTGCATGGAGATGCTGTTCTTGATGAATTGCTGGACTG CACCATTTTGAGTGGGGATGTCATTATACGCCATCTTGCACAGCTTCTGAGTCCAAAATA TGTTGTATTTCTGACAGATGTCCATGGAGTATTTGATCGTCCTCCATCAGACCCGAATGC AGTACTTCTCAGAGAGATAGCGGTGGATGAAAATGGCAGCTGGTCGATTGTAAAACCAGC ATTGAAAGGCAACAAGAAAGGAGTGGAGATATCTGTAGCTGCACATGACACCACTGGCGG AATGGAGACCAAAATATTGGAAGCTGCTGCGATAGCTAGGCTTGGAGTTGATGTGTATAT TACAAAGGTTGGTACAGAACATTCACTGAGAGCCTTAAAAGGGGACACGAGCTCAGAAGA TTGGCTTGGAACCGTCATACGATCTTCCAGATAGAATTCTTGGCCTATCATTTTCGGGAG TAAGCATCCATTGGCAAATATTTTATCACCATTATTGTAGGACGATTGTGAAGCTATGAG CTGATCACCTGTCAAATGATTCATGGGGTTATTATTGCTGAATCTCATAGCAGACAATGA GGCAGAGCTCGGTGTTATGCTACAAGTAACAGTCCTACGACATTATAATAAGTA



consensusID : consensus_6296#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 368
fasta sequence
                              [CTCTCCCTCCCGAGGCCTTGNGCCGGCCCCAGGTCGAGGAGAGGAAGCTCCCCTGGCGGAGGAGGCGGCGCAGGAGGCGCCGACGGACCCCGCCGCCTCCCGCCCCGTCCGCTGCCTCGTCAAACTCGGTGGAGCCGCCCTCACCAACAGGGGAGAGCCGGAGAGCCTCGAACGCCGCGAGCCTGCGGGTCGGCGTGCGCCCAGCTGCCGGCGGCCCTGTCCCCCGGCCGGCGCGGCCGGGAAGGTTGTGGGGATGGACTGGAGCAGACCGCCCCGGCGATCCCACCCGCCCCGGTCGTGGATGTGGAGGGGCTTGGTCGAGATGGGGAGGCTTGGGGGGCTCGACCTCCCACCTTCCTCCTTCGTCC]

[+] EMBL CA753508             [CTCTCCCTCCCGAGGCCTTGNGCCGGCCCCAGGTCGAGGAGAGGAAGCTCCCCTGGCGGAGGAGGCGGCGCAGGAGGCGCCGACGGACCCCGCCGCCTCCCGCCCCGTCCGCTGCCTCGTCAAACTCGGTGGAGCCGCCCTCACCAACAGGGGAGAGCCGGAGAGCCTCGAACGCCGCGAGCCTGCGGGTCGGCGTGCGCCCAGCTGCCGGCGGCCCTGTCCCCCGGCCGGCGCGGCCGGGAAGGTTGTGGGGATGGACTGGAGCAGACCGCCCCGGCGATCCCACCCGCCCCGGTCGTGGATGTGGAGGGGCTTGGTCGAGATGGGGAGGCTTGGGGGGCTCGACCTCCCACCTTCCTCCTTCGTCC]


>consensus_6296#2 CTCTCCCTCCCGAGGCCTTGNGCCGGCCCCAGGTCGAGGAGAGGAAGCTCCCCTGGCGGA GGAGGCGGCGCAGGAGGCGCCGACGGACCCCGCCGCCTCCCGCCCCGTCCGCTGCCTCGT CAAACTCGGTGGAGCCGCCCTCACCAACAGGGGAGAGCCGGAGAGCCTCGAACGCCGCGA GCCTGCGGGTCGGCGTGCGCCCAGCTGCCGGCGGCCCTGTCCCCCGGCCGGCGCGGCCGG GAAGGTTGTGGGGATGGACTGGAGCAGACCGCCCCGGCGATCCCACCCGCCCCGGTCGTG GATGTGGAGGGGCTTGGTCGAGATGGGGAGGCTTGGGGGGCTCGACCTCCCACCTTCCTC CTTCGTCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6296#0      CTCTCCCTCCCGAGGCCTTGG-CCGGCGCGAGGTCGAGGAGAGGAAGCTCCCATGGCGGA 59
consensus_6296#2      CTCTCCCTCCCGAGGCCTTGNGCCGGCCCCAGGTCGAGGAGAGGAAGCTCCCCTGGCGGA 60
consensus_6296#1      ------------------------------------------------------------
                                                                                  

consensus_6296#0      GGAGGCGGCGCAGGAGCAGCAGACGGACCCCGCCGCCTCCCGCCCCGTCCGCTGCATCGT 119
consensus_6296#2      GGAGGCGGCGCAGGAGGCGCCGACGGACCCCGCCGCCTCCCGCCCCGTCCGCTGCCTCGT 120
consensus_6296#1      ------------------------------------------------------------
                                                                                  

consensus_6296#0      CAAACTCGGTACTCGCGCGCGCTCCGTCGCTCCCTTGTTTCCTCTCTGCTCCTCTTTAGC 179
consensus_6296#2      CAAACTCGGT-------------------------------------------------- 130
consensus_6296#1      ------------------------------------------------------------
                                                                                  

consensus_6296#0      AGCTTCGATGGCGCAGGTGGAGCGGCCATCACGAACAAGGGAGAGCTGGAGAGCATCGA- 238
consensus_6296#2      ------------------GGAGCCGCCCTCACCAACAGGGGAGAGCCGGAGAGCCTCGAA 172
consensus_6296#1      ------------------------------------------------------------
                                                                                  

consensus_6296#0      CGCGGCGAGCTTGCGG-TCGGCGTGCGCGCAGCTGCGGCAGGCCATGTCCCACGGC-GGC 296
consensus_6296#2      CGCCGCGAGCCTGCGGGTCGGCGTGCGCCCAGCTGCCGGCGGCCCTGTCCCCCGGCCGGC 232
consensus_6296#1      ------------------------------------------------------------
                                                                                  

consensus_6296#0      GCGGCGGGGAAGGTTGTGGGGATGGACTGGAGCAGACGGCCC-GGCGATCCGACCGGCCC 355
consensus_6296#2      GCGGCCGGGAAGGTTGTGGGGATGGACTGGAGCAGACCGCCCCGGCGATCCCACCCGCCC 292
consensus_6296#1      ------------------------------------------------------------
                                                                                  

consensus_6296#0      -GGTCGTGGATGTGGAGGG-CTTGTCGGAGATGGG-AGGCTTGGGGCTCGACTCCAACTT 412
consensus_6296#2      CGGTCGTGGATGTGGAGGGGCTTGGTCGAGATGGGGAGGCTTGGGG---GGCTCGACCTC 349
consensus_6296#1      ------------------------------------------------------------
                                                                                  

consensus_6296#0      C-GTCGTCGTCCATGGTGCCGGTATGCATGGCTCCTCATCTGAACTAACAACTGTGCCTA 471
consensus_6296#2      CCACCTTCCTCCTTCGTCC----------------------------------------- 368
consensus_6296#1      ------------------------------------------------------------
                                                                                  

consensus_6296#0      TCTGTCATTTTGTATTGCTGATGAGTTCATGAGCAGAACTGGGGGATCGGTGGTCGGTTG 531
consensus_6296#2      ------------------------------------------------------------
consensus_6296#1      ------------------------------------------------------------
                                                                                  

consensus_6296#0      GGATCTGGAGACGATAGGATCAGCTTGATTGCTGTATTTTGGTTTCAGAATACTACTACG 591
consensus_6296#2      ------------------------------------------------------------
consensus_6296#1      ------------------------------------------------------------
                                                                                  

consensus_6296#0      GCTAAGTGAAAATTTGGTGCGAAACTGTGAACCAAGTACCATTCTCAATGTGTATCAATG 651
consensus_6296#2      ------------------------------------------------------------
consensus_6296#1      ------------------------------------------------------------
                                                                                  

consensus_6296#0      ACAAGCAATTGTAAACATTGTTCACGACCTGCTTAACCGGTCTATATTCGGAACGTAGCT 711
consensus_6296#2      ------------------------------------------------------------
consensus_6296#1      ------------------------------------------------------------
                                                                                  

consensus_6296#0      GACCTTCGTGGAATATATTTGAATAAATCTGTTTTGATTGGTAGACACCCTGAAAATATA 771
consensus_6296#2      ------------------------------------------------------------
consensus_6296#1      ------------------------------------------------------------
                                                                                  

consensus_6296#0      GTTTTAGATCATAGACCATCGGGCCCGGCTTTTATAGAAAGCCAGAAGCGGCACAGTGGT 831
consensus_6296#2      ------------------------------------------------------------
consensus_6296#1      ------------------------------------------------------------
                                                                                  

consensus_6296#0      GGGGGAGACCCACTTACAAGAGTTCAGCACAAAAACACAGAAACAGGGCAGAAACCAAAC 891
consensus_6296#2      ------------------------------------------------------------
consensus_6296#1      ------------------------------------------------------------
                                                                                  

consensus_6296#0      CATGCCAAGGGATACAAAGGGGTTGAAGCTAAGCGACCAAAAGCAAAAGACAACTCAGGC 951
consensus_6296#2      ------------------------------------------------------------
consensus_6296#1      ---------------------------CCTCCCGAGGCCTTGGCCGGCGCGAGGTCGAGG 33
                                                                                  

consensus_6296#0      ACCTCTAAACAACTCAACAGATAACAGCTAACCAACAGCACCACAGAAAAAGCATCAGTG 1011
consensus_6296#2      ------------------------------------------------------------
consensus_6296#1      AGAGGAAGCTCCCATGGCGGAGGA-GGCGGCGCAGGAGCAGCAGACGGACCCCGCCGCCT 92
                                                                                  

consensus_6296#0      CTTACCCTACTC-CAGCTCTGGGAGGACCAAGGGAGGAGACTGCTTCCATAAGTTTGCTA 1070
consensus_6296#2      ------------------------------------------------------------
consensus_6296#1      CCCGCCCCGTCCGCTGCATCGTCAAACTCGGTGGAG----CGGCCATCACGAACAAGGGA 148
                                                                                  

consensus_6296#0      GCCATGGCCTCCAGCTTCTCAGCATCCTTCCTGCTTAGG-ACTTTCCACTGCATCAATAA 1129
consensus_6296#2      ------------------------------------------------------------
consensus_6296#1      GAGCTGGAGAGCATCGACGCGGCGAGCTTGCGGTCGGCGTGCGCGCAGCTGCGGCAGGCC 208
                                                                                  

consensus_6296#0      AGATTTGATTTGAAAATGTAGTCCTAGGCAACCAGGGGAGAATAAAGAAAATAGCTCACA 1189
consensus_6296#2      ------------------------------------------------------------
consensus_6296#1      ATGTCCCACGGCGGCGCGGCGGGGAAGGTTGTGGGGATGGACTGGAGCAGACGGCCCGGC 268
                                                                                  

consensus_6296#0      CTTCATGATGCCTGTAATACTGGCCGACTATAATTGGCCTGTTGTAGTTTAAAGGATACA 1249
consensus_6296#2      ------------------------------------------------------------
consensus_6296#1      GATC----CGACCGGCCCGGTCGTGGA-TGTGGAGGGCTTGTCGGAGATGGGAGGCT-TG 322
                                                                                  

consensus_6296#0      GCCCACGATTTTGGTGGTGTAATAGCTGACTACCTACATCTGCTACCTCAGGGTCTTTTG 1309
consensus_6296#2      ------------------------------------------------------------
consensus_6296#1      GGGCTCGACTCCAACTTCGTCGTCGTCCA-----------TGGTGCC---GGGTCTTTTG 368
                                                                                  

consensus_6296#0      GTCACTTCCAAGCAAGTAGATCTGGAGTCCATAAAGGGGGTCTTCATTCAACACTTGTGA 1369
consensus_6296#2      ------------------------------------------------------------
consensus_6296#1      GTCACTTCCAAGCAAGTAGATCTGGAGTCCATAAAGGGGGTCTTCATTCAACACTTGTGA 428
                                                                                  

consensus_6296#0      AGGCTGGCTTTGTGGCTACAAGAATTTCAGTCACTTCTCTCAACCAGGAGATTGTTAGAG 1429
consensus_6296#2      ------------------------------------------------------------
consensus_6296#1      AGGCTGGCTTTGTGGCTACAAGAATTTCAGTCACTTCTCTCAACCAGGAGATTGTTAGAG 488
                                                                                  

consensus_6296#0      CTCTTGCAAGAGAAGGAATACCGTCTGTTGGGATGTCACCGTTTGCTTGTGGATGGTCTA 1489
consensus_6296#2      ------------------------------------------------------------
consensus_6296#1      CTCTTGCAAGAGAAGGAATACCGTCTGTTGGGATGTCACCGTTTGCTTGTGGATGGTCTA 548
                                                                                  

consensus_6296#0      CTAAGCAAAGAAATGTGAGAAAGCAAACAATTAACTAAATTTCTTCTGTTTCTTTGGACA 1549
consensus_6296#2      ------------------------------------------------------------
consensus_6296#1      CTAAGCAAAGAAAT---------------------------------------------- 562
                                                                                  

consensus_6296#0      TGGACTTGACATTGCAAAGTTCTTGAAGATCTATGTCTAATCCTATCAACAGAGATGCCC 1609
consensus_6296#2      ------------------------------------------------------------
consensus_6296#1      ------------------------------------------------------------
                                                                                  

consensus_6296#0      TTTGATTTTTTACCTTCCAGTTTTGCACTTACAGCTTGAATCAGTGGATGCTTCTCAAAT 1669
consensus_6296#2      ------------------------------------------------------------
consensus_6296#1      ----------------------------------CTTGAATCAGTGGATGCTTCTCAAAT 588
                                                                                  

consensus_6296#0      CATGCTATCACTCCATGTTGGCTTTGTCCCTGTTTTGCATGGAGATGCTGTTCTTGATGA 1729
consensus_6296#2      ------------------------------------------------------------
consensus_6296#1      CATGCTATCACTCCATGTTGGCTTTGTCCCTGTTTTGCATGGAGATGCTGTTCTTGATGA 648
                                                                                  

consensus_6296#0      ATTGCTGGACTGCACCATTTTGAGTGGGGATGTCATTATACGCCATCTTGCACAGCTTCT 1789
consensus_6296#2      ------------------------------------------------------------
consensus_6296#1      ATTGCTGGACTGCACCATTTTGAGTGGGGATGTCATTATACGCCATCTTGCACAGCTTCT 708
                                                                                  

consensus_6296#0      GAGTCCAAAATATGTTGTATTTCTGACAGATGTCCATGGAGTATTTGATCGTCCTCCATC 1849
consensus_6296#2      ------------------------------------------------------------
consensus_6296#1      GAGTCCAAAATATGTTGTATTTCTGACAGATGTCCATGGAGTATTTGATCGTCCTCCATC 768
                                                                                  

consensus_6296#0      AGACCCGAATGCAGTACTTCTCAGAGAGATAGCGGTGGATGAAAATGGCAGCTGGTCGAT 1909
consensus_6296#2      ------------------------------------------------------------
consensus_6296#1      AGACCCGAATGCAGTACTTCTCAGAGAGATAGCGGTGGATGAAAATGGCAGCTGGTCGAT 828
                                                                                  

consensus_6296#0      TGTAAAACCAGCATTGAAAGGCAACAAGAAAGGAGTGGAGATATCTGTAGCTGCACATGA 1969
consensus_6296#2      ------------------------------------------------------------
consensus_6296#1      TGTAAAACCAGCATTGAAAGGCAACAAGAAAGGAGTGGAGATATCTGTAGCTGCACATGA 888
                                                                                  

consensus_6296#0      CACCACTGGCGGAATGGAGACCAAAATATTGGAAGCTGCTGCGATAGCTAGGCTTGGAGT 2029
consensus_6296#2      ------------------------------------------------------------
consensus_6296#1      CACCACTGGCGGAATGGAGACCAAAATATTGGAAGCTGCTGCGATAGCTAGGCTTGGAGT 948
                                                                                  

consensus_6296#0      TGATGTGTATATTACAAAGGTTGGTACAGAACATTCACTGAGAGCCTTAAAAGGGGACAC 2089
consensus_6296#2      ------------------------------------------------------------
consensus_6296#1      TGATGTGTATATTACAAAGGTTGGTACAGAACATTCACTGAGAGCCTTAAAAGGGGACAC 1008
                                                                                  

consensus_6296#0      GAGCTCAGAAGATTGGCTTGGAACCGTCATACGATCTTCCAGATAGAATTCTTGGCCTAT 2149
consensus_6296#2      ------------------------------------------------------------
consensus_6296#1      GAGCTCAGAAGATTGGCTTGGAACCGTCATACGATCTTCCAGATAGAATTCTTGGCCTAT 1068
                                                                                  

consensus_6296#0      CATTTTCGGGAGTAAGCATCCATTGGCAAATATTTTATCACCATTATTGTAGGACGATTG 2209
consensus_6296#2      ------------------------------------------------------------
consensus_6296#1      CATTTTCGGGAGTAAGCATCCATTGGCAAATATTTTATCACCATTATTGTAGGACGATTG 1128
                                                                                  

consensus_6296#0      TGAAGCTATGAGCTGATCACCTGTCAAATGATTCATGGGGTTATTATTGCTGAATCTCAT 2269
consensus_6296#2      ------------------------------------------------------------
consensus_6296#1      TGAAGCTATGAGCTGATCACCTGTCAAATGATTCATGGGGTTATTATTGCTGAATCTCAT 1188
                                                                                  

consensus_6296#0      AGCAGACAATGAGGCAGAGCTCGGTGTTATGCTACAAGTAACAGTCCTACGACATTATAA 2329
consensus_6296#2      ------------------------------------------------------------
consensus_6296#1      AGCAGACAATGAGGCAGAGCTCGGTGTTATGCTACAAGTAACAGTCCTACGACATTATAA 1248
                                                                                  

consensus_6296#0      TAAGTAACCTTAT 2342
consensus_6296#2      -------------
consensus_6296#1      TAAGTA------- 1254
                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)