These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6300#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 818 fasta sequence [GAAGCCGTGTAGTCGTACCTCGTACGTGCGGCCGGGGTTTAATTAATAAATTAGCAACACCTAGCTAGCTACTGGCCAGCCATGGCACAAGGAGTGATGCTGTGGTATGATGATTTCCTAGCAGTATTAGTACTTTCTGTGCTGGTGGCTACGTCGTCGACGGCGGCGAACTGCGGCAGGAAGTGTGGCGACGTGCGCATCCCCTACCCGTTCGGCATCGGCGTCGACTGCGCCTGGCCGGGCTTCGATGTCACATGCAACCATAGCTTTACCCCTCCCAGACCCTACTACGGCAACATAGAGATCATGGACATCTCGGTGGCGGAGGGGGAGATGCGCGTCTACACTCCCGTGGTCTCCCAGTGCTACAACTCATCCAACACCACAGACTCTAACGGATTCGAGTCCTTGCAGCTCACCGTCGCCGACTCGCCGTTCCTGGTCTCTCCTGGGAGAAACGAGTTCACGGGCATCGGCTGCGACACCATGGCGTTGCTGCANGGCAGGGACGACTGGAGCTTCCTCACCGGCTGCATCACGACGTGCGTGAGCTTAAACCAGGCCTGCCCGACGGCAAGCAGTGCTCCGGGCTGGGTGCTGCCCGGTTGCTTCCATCCCACCACCCTTACACCGTACCCCCTCACTGGACAACCTCCTGAAACCCGCCTGGACCTCAGCCATCACCTCCCTTTGTGCTGAAAAGATGTTCAATTCCCGGCAATTTCCGCCCCGTACGACCTTATAATGTTGGATTATGTTTCACTCGACTGCCATCTGACACTTTGNTATTTGTTTCCTGTTTCCCACCTGTTTCCGGA] [+] EMBL CA753334 [GAAGCCGTGTAGTCGTACCTCGTACGTGCGGCCGGGGTTTAATTAATAAATTAGCAACACCTAGCTAGCTACTGGCCAGCCATGGCACAAGGAGTGATGCTGTGGTATGATGATTTCCTAGCAGTATTAGTACTTTCTGTGCTGGTGGCTACGTCGTCGACGGCGGCGAACTGCGGCAGGAAGTGTGGCGACGTGCGCATCCCCTACCCGTTCGGCATCGGCGTCGACTGCGCCTGGCCGGGCTTCGATGTCACATGCAACCATAGCTTTACCCCTCCCAGACCCTACTACGGCAACATAGAGATCATGGACATCTCGGTGGCGGAGGGGGAGATGCGCGTCTACACTCCCGTGGTCTCCCAGTGCTACAACTCATCCAACACCACAGACTCTAACGGATTCGAGTCCTTGCAGCTCACCGTCGCCGACTCGCCGTTCCTGGTCTCTCCTGGGAGAAACGAGTTCACGGGCATCGGCTGCGACACCATGGCGTTGCTGCANGGCAGGGACGACTGGAGCTTCCTCACCGGCTGCATCACGACGTGCGTGAGCTTAAACCAGGCCTGCCCGACGGCAAGCAGTGCTCCGGGCTGGGTGCTGCCCGGTTGCTTCCATCCCACCACCCTTACACCGTACCCCCTCACTGGACAACCTCCTGAAACCCGCCTGGACCTCAGCCATCACCTCCCTTTGTGCTGAAAAGATGTTCAATTCCCGGCAATTTCCGCCCCGTACGACCTTATAATGTTGGATTATGTTTCACTCGACTGCCATCTGACACTTTGNTATTTGTTTCCTGTTTCCCACCTGTTTCCGGA] consensusID : consensus_6300#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 758 fasta sequence [GATCATGGACATCTCGGTGGCGGAGGGGGAGATGCGCGTCTACACTCCCGTGGTCTCCCAGTGCTACAACTCATCCAACACCACAGACTCTAACGGATTCGAGTCCTTGCAGCTCACCGTCGCCGACTCGCCGTTCCTGGTCTCTCCTGGGAGAAACGAGTTCACGGCCATCGGCTGCGACACCATGGCGTTGCTGCAGGGCAGGGACGACTGGAGCTTCCTCACCGGCTGCATCACGACGTGCGTGAGCTTAGACGAGGCTGCCCACGACGGCGAGCAGTGCTCCGGGCTGGGTTGCTGCCAGGTGCCTTCCATCCCACCCAACCTTACCACCGTAGCGCTCGACTGGAGCAACCGTACTGAAAACCTGGCCTGGACATACAGCCCATGCAGCTACGCCTTCGTGGCTGAGAAAGGATGGTACAAATTCAGCCGGCGAGATTTTAGCCGTGCCGGTAGCAAGAGCTTTATGAATCGTGCTGGAGATAGAAGTGTCGTTACAGTGCTTGATTGGGCTATCAGCAGCAACGGATCGTGCTCGTCAACATCGCGGGTTGCTCCTGCCTGTGTCAGCCCCAACAGCTACTGCGTCAACACCACCAATGGACAGGGATATCTTTGCAAGTGCTCCACGGGATATGATGGCAATCCCTACGTCACCGGTGACAGTGGGTGTACAAATATTAATGAATGCAAGCTTAGAAGAGAAGACCCTGCCAAGTACAGAGAACTTTATCCATGTTACGGTGGTAGCAAAT] [+] EMBL CB619116 [GATCATGGACATCTCGGTGGCGGAGGGGGAGATGCGCGTCTACACTCCCGTGGTCTCCCAGTGCTACAACTCATCCAACACCACAGACTCTAACGGATTCGAGTCCTTGCAGCTCACCGTCGCCGACTCGCCGTTCCTGGTCTCTCCTGGGAGAAACGAGTTCACGGCCATCGGCTGCGACACCATGGCGTTGCTGCAGGGCAGGGACGACTGGAGCTTCCTCACCGGCTGCATCACGACGTGCGTGAGCTTAGACGAGGCTGCCCACGACGGCGAGCAGTGCTCCGGGCTGGGTTGCTGCCAGGTGCCTTCCATCCCACCCAACCTTACCACCGTAGCGCTCGACTGGAGCAACCGTACTGAAAACCTGGCCTGGACATACAGCCCATGCAGCTACGCCTTCGTGGCTGAGAAAGGATGGTACAAATTCAGCCGGCGAGATTTTAGCCGTGCCGGTAGCAAGAGCTTTATGAATCGTGCTGGAGATAGAAGTGTCGTTACAGTGCTTGATTGGGCTATCAGCAGCAACGGATCGTGCTCGTCAACATCGCGGGTTGCTCCTGCCTGTGTCAGCCCCAACAGCTACTGCGTCAACACCACCAATGGACAGGGATATCTTTGCAAGTGCTCCACGGGATATGATGGCAATCCCTACGTCACCGGTGACAGTGGGTGTACAAATATTAATGAATGCAAGCTTAGAAGAGAAGACCCTGCCAAGTACAGAGAACTTTATCCATGTTACGGTGGTAGCAAAT] [+] EMBL CB619379 [GATCATGGACATCTCGGTGGCGGAGGGGGAGATGCGCGTCTACACTCCCGTGGTCTCCCAGTGCTACAACTCATCCAACACCACAGACTCTAACGGATTCGAGTCCTTGCAGCTCACCGTCGCCGACTCGCCGTTCCTGGTCTCTCCTGGGAGAAACGAGTTCACGGCCATCGGCTGCGACACCATGGCGTTGCTGCAGGGCAGGGACGACTGGAGCTTCCTCACCGGCTGCATCACGACGTGCGTGAGCTTAGACGAGGCTGCCCACGACGGCGAGCAGTGCTCCGGGCTGGGTTGCTGCCAGGTGCCTTCCATCCCACCCAACCTTACCACCGTAGCGCTCGACTGGAGCAACCGTACTGAAAACCTGGCCTGGACATACAGCCCATGCAGCTACGCCTTCGTGGCTGAGAAAGGATGGTACAAATTCAGCCGGCGAGATTTTAGCCGTGCCGGTAGCAAGAGCTTTATGAATCGTGCTGGAGATAGAAGTGTCGTTACAGTGCTTGATTGGGCTATCAGCAGCAACGGATCGTGCTCGTCAACATCGCGGGTTGCTCCTGCCTGTGTCAGCCCCAACAGCTACTGCGTCAACACCACCAATGGACAGGGATATCTTTGCAAGTGCTCCACGGGATATGATGGCAATCCCTACGTCACCGGTGACAGTGGGTGTACAAATATTAATGAATGCAAGCTTAGAAGAGAAGACCC ] consensusID : consensus_6300#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence [TGTGGTATGATGATTTCCTAGCAGTATTAGTACTTTCTGTGCTGGGGGCCATGTCGTGGACGGCGGCGAACTGCGCCAGGAAGTGTGGCGACGTGCGCATCCCCTACCCGTTCGGCATCGGCGTCGACTGCGCCTGGCCGGGCTTCGATGTCACATGCAACCATAGCTTTACCCCTCCCAGACCCTACTACGGCAACATAGAGATCATGGACATCTCGGTGGCGGAGGGGGAGATGCGCGTCTACACTCCGTGGTCTCCCAGTGCTACAACTCATCCAACACCACAGACTCTAACGGATTCGAGTCCTTGCAGCTCACCGTCGCCGACTCGCCGTTCCTGGTCTCTCCTGGGAGAAACGAGTTCACGGCCATCGGCTGCGACACCATGGCGTTGCTGCAGGGCAGGGACGACTGGAGCTTCCTCACCGGATGCATCACGACGTGCGTGAGCTTAGACGAGGCTGCCCACGACGGCGAGCAGTGCTCCGGGCTGGGTTGCTGCCAGGTGCCTTCCATCCCACCCAACCTTACCACCGTAGCGCTCGACTGGAGCAACCGTACTGAAAACCTGGCCTGGACATACAGCCCATGCAGCTACGCCTTCGTGGCTGAGAAAGGATGGTAAGCTAATTAAATAAAGAAAATCTATCTATTATACCTAAAAAAAAAAAA] [-] EMBL CA759396 [TGTGGTATGATGATTTCCTAGCAGTATTAGTACTTTCTGTGCTGGGGGCCATGTCGTGGACGGCGGCGAACTGCGCCAGGAAGTGTGGCGACGTGCGCATCCCCTACCCGTTCGGCATCGGCGTCGACTGCGCCTGGCCGGGCTTCGATGTCACATGCAACCATAGCTTTACCCCTCCCAGACCCTACTACGGCAACATAGAGATCATGGACATCTCGGTGGCGGAGGGGGAGATGCGCGTCTACACTCCGTGGTCTCCCAGTGCTACAACTCATCCAACACCACAGACTCTAACGGATTCGAGTCCTTGCAGCTCACCGTCGCCGACTCGCCGTTCCTGGTCTCTCCTGGGAGAAACGAGTTCACGGCCATCGGCTGCGACACCATGGCGTTGCTGCAGGGCAGGGACGACTGGAGCTTCCTCACCGGATGCATCACGACGTGCGTGAGCTTAGACGAGGCTGCCCACGACGGCGAGCAGTGCTCCGGGCTGGGTTGCTGCCAGGTGCCTTCCATCCCACCCAACCTTACCACCGTAGCGCTCGACTGGAGCAACCGTACTGAAAACCTGGCCTGGACATACAGCCCATGCAGCTACGCCTTCGTGGCTGAGAAAGGATGGTAAGCTAATTAAATAAAGAAAATCTATCTATTATACCTAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6300#0 GAAGCCGTGTAGTCGTACCTCGTACGTGCGGCCGGGGTTTAATTAATAAATTAGCAACAC 60 consensus_6300#2 ------------------------------------------------------------ consensus_6300#1 ------------------------------------------------------------ consensus_6300#0 CTAGCTAGCTACTGGCCAGCCATGGCACAAGGAGTGATGCTGTGGTATGATGATTTCCTA 120 consensus_6300#2 ----------------------------------------TGTGGTATGATGATTTCCTA 20 consensus_6300#1 ------------------------------------------------------------ consensus_6300#0 GCAGTATTAGTACTTTCTGTGCTGGTGGCTACGTCGTCGACGGCGGCGAACTGCGGCAGG 180 consensus_6300#2 GCAGTATTAGTACTTTCTGTGCTGGGGGCCATGTCGTGGACGGCGGCGAACTGCGCCAGG 80 consensus_6300#1 ------------------------------------------------------------ consensus_6300#0 AAGTGTGGCGACGTGCGCATCCCCTACCCGTTCGGCATCGGCGTCGACTGCGCCTGGCCG 240 consensus_6300#2 AAGTGTGGCGACGTGCGCATCCCCTACCCGTTCGGCATCGGCGTCGACTGCGCCTGGCCG 140 consensus_6300#1 ------------------------------------------------------------ consensus_6300#0 GGCTTCGATGTCACATGCAACCATAGCTTTACCCCTCCCAGACCCTACTACGGCAACATA 300 consensus_6300#2 GGCTTCGATGTCACATGCAACCATAGCTTTACCCCTCCCAGACCCTACTACGGCAACATA 200 consensus_6300#1 ------------------------------------------------------------ consensus_6300#0 GAGATCATGGACATCTCGGTGGCGGAGGGGGAGATGCGCGTCTACACTCCCGTGGTCTCC 360 consensus_6300#2 GAGATCATGGACATCTCGGTGGCGGAGGGGGAGATGCGCGTCTACACTCC-GTGGTCTCC 259 consensus_6300#1 --GATCATGGACATCTCGGTGGCGGAGGGGGAGATGCGCGTCTACACTCCCGTGGTCTCC 58 ************************************************ ********* consensus_6300#0 CAGTGCTACAACTCATCCAACACCACAGACTCTAACGGATTCGAGTCCTTGCAGCTCACC 420 consensus_6300#2 CAGTGCTACAACTCATCCAACACCACAGACTCTAACGGATTCGAGTCCTTGCAGCTCACC 319 consensus_6300#1 CAGTGCTACAACTCATCCAACACCACAGACTCTAACGGATTCGAGTCCTTGCAGCTCACC 118 ************************************************************ consensus_6300#0 GTCGCCGACTCGCCGTTCCTGGTCTCTCCTGGGAGAAACGAGTTCACGGGCATCGGCTGC 480 consensus_6300#2 GTCGCCGACTCGCCGTTCCTGGTCTCTCCTGGGAGAAACGAGTTCACGGCCATCGGCTGC 379 consensus_6300#1 GTCGCCGACTCGCCGTTCCTGGTCTCTCCTGGGAGAAACGAGTTCACGGCCATCGGCTGC 178 ************************************************* ********** consensus_6300#0 GACACCATGGCGTTGCTGCANGGCAGGGACGACTGGAGCTTCCTCACCGGCTGCATCACG 540 consensus_6300#2 GACACCATGGCGTTGCTGCAGGGCAGGGACGACTGGAGCTTCCTCACCGGATGCATCACG 439 consensus_6300#1 GACACCATGGCGTTGCTGCAGGGCAGGGACGACTGGAGCTTCCTCACCGGCTGCATCACG 238 ******************** ***************************** ********* consensus_6300#0 ACGTGCGTGAGCTTAAACCAGGCCTGCC-CGACGGCAAGCAGTGCTCCGGGCTGGGT-GC 598 consensus_6300#2 ACGTGCGTGAGCTTAGACGAGGCTGCCCACGACGGCGAGCAGTGCTCCGGGCTGGGTTGC 499 consensus_6300#1 ACGTGCGTGAGCTTAGACGAGGCTGCCCACGACGGCGAGCAGTGCTCCGGGCTGGGTTGC 298 *************** ** **** ** ******* ******************** ** consensus_6300#0 TGCCCGGTTGCTTCCATCCCACC--ACCCTTACACCGTACCCCCTCACTGGA-CAACC-T 654 consensus_6300#2 TGCCAGGTGCCTTCCATCCCACCCAACCTTACCACCGTAGCGCTCGACTGGAGCAACCGT 559 consensus_6300#1 TGCCAGGTGCCTTCCATCCCACCCAACCTTACCACCGTAGCGCTCGACTGGAGCAACCGT 358 **** *** ************* *** * ******* * * ****** ***** * consensus_6300#0 CCTGAAACCC--GCCTGGACCT-CAGCCATCACCTC----CCTTTGTG-CTGAAAAGATG 706 consensus_6300#2 ACTGAAAACCTGGCCTGGACATACAGCCCATGCAGCTACGCCTTCGTGGCTGAGAAAGGA 619 consensus_6300#1 ACTGAAAACCTGGCCTGGACATACAGCCCATGCAGCTACGCCTTCGTGGCTGAGAAAGGA 418 ****** ** ******** * ***** * * **** *** **** ** consensus_6300#0 T--TCAATTCCCGGCAATTTCCGCCCCGTACGACCTTATAATGTTGGATT-ATGTTTCAC 763 consensus_6300#2 T--GGTAAGCTAATTAAATAAAG---AAAATCTATCTATTATACCTAAAA-AAAAAAAA- 672 consensus_6300#1 TGGTACAAATTCAGCCGGCGAGATTTTAGCCGTGCCGGTAGCAAGAGCTTTATGAATCGT 478 * * * * consensus_6300#0 TCGACTGCCATCTGACACTTTGNTATTTGTTTCCTGTTTCCCACCTGTTTCCGGA----- 818 consensus_6300#2 ------------------------------------------------------------ consensus_6300#1 GCTGGAGATAGAAGTGTCGTTACAGTGCTTGATTGGGCTATCAGCAGCAACGGATCGTGC 538 consensus_6300#0 ------------------------------------------------------------ consensus_6300#2 ------------------------------------------------------------ consensus_6300#1 TCGTCAACATCGCGGGTTGCTCCTGCCTGTGTCAGCCCCAACAGCTACTGCGTCAACACC 598 consensus_6300#0 ------------------------------------------------------------ consensus_6300#2 ------------------------------------------------------------ consensus_6300#1 ACCAATGGACAGGGATATCTTTGCAAGTGCTCCACGGGATATGATGGCAATCCCTACGTC 658 consensus_6300#0 ------------------------------------------------------------ consensus_6300#2 ------------------------------------------------------------ consensus_6300#1 ACCGGTGACAGTGGGTGTACAAATATTAATGAATGCAAGCTTAGAAGAGAAGACCCTGCC 718 consensus_6300#0 ---------------------------------------- consensus_6300#2 ---------------------------------------- consensus_6300#1 AAGTACAGAGAACTTTATCCATGTTACGGTGGTAGCAAAT 758 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||