These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6308#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 787 fasta sequence [CAATTCATCAATTATTTTGGGTGGTAGTTGGAAACCCACGCATAGTACAGTTTGCAGTTTGACTCAGTTAACACGGAATACGCTGAACTGCATAGCAAGCAGCAACTTACTCAGTGAAACATGAGTAGTTGGGTAAAACACTCCAACAAATGTTATACAAGATCCTGTGGGTCATCCATCTTCTCACTTCTCGGCGCTAATATAGTACAGGGAGATATATGGAGCAACAAATGTGTACATACGGTTTTGCTCTAGTACAGGGAAACACTGCGAAAAGCGGTGCTAGAGGCCTATTCTCTCAGCATTGTAAAGATACCATGGTTTTTTATGAGGTTCTAATGCTTGGTGTTAGCATTTTGTAACGTTCAGATCCTTGCGATCGATGGAGCTACCTGTGCAGCCATTACAGGCCATTTCCAACTGCTACGTAGTAACTAAAAGCACATTTTGCAGTTACAGAATCCCAAGTACTTAATCCTTGGGAAGGGTGAGATCATCAGCAGAAGCTACCCTTTTTCCATTATAACGCTGCTTCCCGAAGGAGAATGGAACATATCTGTATTTTATCATATGAAGAATCTGTCGCTTCATTGTGACTGTAAACAAAACCACCCAATAGAATAGAAGAATAGGCCAAAACACAGGCACATCGAACACACTGAAGAACGTCAGGACAAAAGCAATACAGAATGCTTTAACAATGGAATACCTGTAAAGGAGAAAGTCAAATTAAAGTTAGTTTTATCTGTCAAAGAAAAAATAACTTCACAGAAAACACAGCAGACAT] [-] EMBL CA767281 [CAATTCATCAATTATTTTGGGTGGTAGTTGAAAACCCACGCATAGTACAGTTTGCAGTTTGACTCAGTTAACACGGAATACGCTGAACTGCATAGCAAGCAGCAACTTACTCAGTGAAACATGAGTAGTTGGGTAAAACACTCCAACAAATGTTATACAAGATCCTGTGGGTCATCCATCTTCTCACTTCTCGGCGCTAATATAGTACAGGGAGATATATGGAGCAACAAATGTGTACATACGGTTTTGCTCTAGTACAGGGAAACACTGCGAAAAGCGGTGCTAGAGGCCTATTCTCTCAGCATTGTAAAGATACCATGGTTTTTTATGAGGTTCTAATGCTTGGTGTTAGCATTTTGTAACGTTCAGATCCTTGCGATCGATGGAGCTACCTGTGCAGCCATTACAGGCCATTTCCAACTGCTACGTAGTAACTAAAAGCACATTTTGCAGTTACAGAATCCCAAGTACTTAATCCTTGGGAAGGGTGAGATCATCAGCAGAAGCTACCCTTTTTCCATTATAACGCTGCTTCCCGAAGGAGAATGGAACATATCTGTATTTTATCATATGAAGAATCTGTCGCTTCATTGTGACTATAAACAAAACCACCCAATAGAATAGAAGAATAGGCCAAAACACA ] [+] EMBL CB647402 [ tcctttttTTATTTTGGGTGGTAGTTGGAAACCCACGCATAGTCCAGTTTGCAGTTTGACTCAGTTAACACGGAATACGCTGAACTGCATAGCAAGCAGCAACTTACTCAGTGAAACATGAGTAGTTGGGTAAAACACTCCAACAAATGTTATACAAGATCCTGTGGGTCATCCATCTTCTCACTTCTCGGCGCTAATATAGTACAGGGAGATATATGGAGCAACAAATGTGTACATACGGTTTTGCTCTAGTACAGGGAAACACTGCGAAAAGCGGTGCTAGAGGCCTATTCTCTCAGCATTGTAAAGATACCATGGTTTTTTATGAGGTTCTAATGCTTGGTGTTAGCATTTTGTAACGTTCAGATCCTTGCGATCGATGGAGCTACCTGTGCAGCCATTACAGGCCATTTCCAACTGCTACGTAGTAACTAAAAGCACATTTTGCAGTTACAGAATCCCAAGTACTTAATCCTTGGGAAGGGTGAGATCATCAGCAGAAGCTACCCTTTTTCCATTATAACGCTGCTTCCCGAAGGAGAATGGAACATATCTGTATTTTATCATATGAAGAATCTGTCGCTTCATTGTGACTGTAAACAAAACCACCCAATAGAATAGAAGAATAGGCCAAAACACAGGCACATCGAACACACTGAAGAACGTCAGGACAAAAGCAATACAGAATGCTTTAACAATGGAATACCTGTAAAGGAGAAAGTCAAATTAAAGTTAGTTTTATCTGTCAAAGAAAAAATAACTTCACAGAAAACACAGCAGACAT] [+] EMBL CB647447 [ TAGTTGGAAACCCACGCATAGTACATTTTGCAGTTTGACTCAGTTAACACGGAATACGCTGAACTGCATAGCAAGCAGCAACTTACTCAGTGAAACATGAGTAGTTGGGTAAAACACTCCAACAAATGTTATACAAGATCCTGTGGGTCATCCATCTTCTCACTTCTCGGCGCTAATATAGTACAGGGAGATATATGGAGCAACAAATGTGTACATACGGTTTTGCTCTAGTACAGGGAAACACTGCGAAAAGCGGTGCTAGAGGCCTATTCTCTCAGCATTGTAAAGATACCATGGTTTTTTATGAGGTTCTAATGCTTGGTGTTAGCATTTTGTAACGTTCAGATCCTTGCGATCGATGGAGCTACCTGTGCAGCCATTACAGGCCATTTCCAACTGCTACGTAGTAACTAAAAGCACATTTTGCAGTTACAGAATCCCAAGTACTTAATCCTTGGGAAGGGTGAGATCATCAGCAGAAGCTACCCTTTTTCCATTATAACGCTGCTTCCCGAAGGAGAATGGAACATATCTGTATTTTATCATATGAAGAATCTGTCGCTTCATTGTGACTGTAAACAAAACCACCCAATAGAATAGAAGAATAGGCCAAAACACAGGCACATCGAACACACTGAAGAACGTCCGGACAAAAGCAATACAGAATGCTTTAACAATGGAATACCTGTAAAGGAGAAAGTCAAATTAAAGTTAG ] consensusID : consensus_6308#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 535 fasta sequence [TTTCCAAGTGTTAAGTAGTAACTAAAGCACATATTGCAGGTACAGAATCCCAAGTANTTAATCCTTGGAAGGGGTGAGATCATCAGCAGAAGCTACCTTTTTCCCATTATAACGGTGCTTCCCGAAGGAGAATGGAACATATCTGTATTTTATCATATGAAGGATCTGTCGCTTCATGGTGACTGTAAACAAAACCACCCAATAGAATAGAAGAATAGGCCAAAACACAGGCACATCGCACACACTGAAGGACGTCAGGACAAAAGCGATACAGAATGCTTTAACAATGGCATACCAGAATTTGAACTCCGGAAGGCGACGGACGAAAGGGCGGAACTCGTCAGATGCGCGGGTGGGGAGCGCGGCCCCCCCCTCGCCGAGCACCTCGGCGACCTCGGGGTCGACCTGGGGCGAGAGGAAGGCGATGAGGAGGTTGAGGATGTAGATGCCGAGGGCGTAGGTCACGATGTAGTACCCTCCCGCGAACCAGACACGCAGCGCGTACGCGGCCGCCACGCCGGCGAAGGCCAGCCAC] [-] EMBL CA753165 [TTTCCAAGTGTTAAGTAGTAACTAAAGCACATATTGCAGGTACAGAATCCCAAGTANTTAATCCTTGGAAGGGGTGAGATCATCAGCAGAAGCTACCTTTTTCCCATTATAACGGTGCTTCCCGAAGGAGAATGGAACATATCTGTATTTTATCATATGAAGGATCTGTCGCTTCATGGTGACTGTAAACAAAACCACCCAATAGAATAGAAGAATAGGCCAAAACACAGGCACATCGCACACACTGAAGGACGTCAGGACAAAAGCGATACAGAATGCTTTAACAATGGCATACCAGAATTTGAACTCCGGAAGGCGACGGACGAAAGGGCGGAACTCGTCAGATGCGCGGGTGGGGAGCGCGGCCCCCCCCTCGCCGAGCACCTCGGCGACCTCGGGGTCGACCTGGGGCGAGAGGAAGGCGATGAGGAGGTTGAGGATGTAGATGCCGAGGGCGTAGGTCACGATGTAGTACCCTCCCGCGAACCAGACACGCAGCGCGTACGCGGCCGCCACGCCGGCGAAGGCCAGCCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6308#0 CAATTCATCAATTATTTTGGGTGGTAGTTGGAAACCCACGCATAGTACAGTTTGCAGTTT 60 consensus_6308#1 ------------------------------------------------------------ consensus_6308#0 GACTCAGTTAACACGGAATACGCTGAACTGCATAGCAAGCAGCAACTTACTCAGTGAAAC 120 consensus_6308#1 ------------------------------------------------------------ consensus_6308#0 ATGAGTAGTTGGGTAAAACACTCCAACAAATGTTATACAAGATCCTGTGGGTCATCCATC 180 consensus_6308#1 ------------------------------------------------------------ consensus_6308#0 TTCTCACTTCTCGGCGCTAATATAGTACAGGGAGATATATGGAGCAACAAATGTGTACAT 240 consensus_6308#1 ------------------------------------------------------------ consensus_6308#0 ACGGTTTTGCTCTAGTACAGGGAAACACTGCGAAAAGCGGTGCTAGAGGCCTATTCTCTC 300 consensus_6308#1 ------------------------------------------------------------ consensus_6308#0 AGCATTGTAAAGATACCATGGTTTTTTATGAGGTTCTAATGCTTGGTGTTAGCATTTTGT 360 consensus_6308#1 ------------------------------------------------------------ consensus_6308#0 AACGTTCAGATCCTTGCGATCGATGGAGCTACCTGTGCAGCCATTACAGGCCATTTCCAA 420 consensus_6308#1 -----------------------------------------------------TTTCCAA 7 ******* consensus_6308#0 CTGCTACGTAGTAACTAAAAGCACATTTTGCAGTTACAGAATCCCAAGTACTTAATCCTT 480 consensus_6308#1 GTGTTAAGTAGTAACTAAA-GCACATATTGCAGGTACAGAATCCCAAGTANTTAATCCTT 66 ** ** ************ ****** ****** **************** ********* consensus_6308#0 GGGAAGGGTGAGATCATCAGCAGAAGCTACCCTTTTTCCATTATAACGCTGCTTCCCGAA 540 consensus_6308#1 GGAAGGGGTGAGATCATCAGCAGAAGCTACCTTTTTCCCATTATAACGGTGCTTCCCGAA 126 ** * ************************** **** *********** *********** consensus_6308#0 GGAGAATGGAACATATCTGTATTTTATCATATGAAGAATCTGTCGCTTCATTGTGACTGT 600 consensus_6308#1 GGAGAATGGAACATATCTGTATTTTATCATATGAAGGATCTGTCGCTTCATGGTGACTGT 186 ************************************ ************** ******** consensus_6308#0 AAACAAAACCACCCAATAGAATAGAAGAATAGGCCAAAACACAGGCACATCGAACACACT 660 consensus_6308#1 AAACAAAACCACCCAATAGAATAGAAGAATAGGCCAAAACACAGGCACATCGCACACACT 246 **************************************************** ******* consensus_6308#0 GAAGAACGTCAGGACAAAAGCAATACAGAATGCTTTAACAATGGAATACCTGTA------ 714 consensus_6308#1 GAAGGACGTCAGGACAAAAGCGATACAGAATGCTTTAACAATGGCATACCAGAATTTGAA 306 **** **************** ********************** ***** * * consensus_6308#0 ------AAGGAGAAAGTCAAAT---TAAAGTTAGTTTTATCTGTCAAAGAAAAAATAA-- 763 consensus_6308#1 CTCCGGAAGGCGACGGACGAAAGGGCGGAACTCGTCAGATGCGCGGGTGGGGAGCGCGGC 366 **** ** * * ** * * ** ** * * * consensus_6308#0 -----CTTCACAGAAAACACAGCAGACAT------------------------------- 787 consensus_6308#1 CCCCCCCTCGCCGAGCACCTCGGCGACCTCGGGGTCGACCTGGGGCGAGAGGAAGGCGAT 426 * ** * ** ** * *** * consensus_6308#0 ------------------------------------------------------------ consensus_6308#1 GAGGAGGTTGAGGATGTAGATGCCGAGGGCGTAGGTCACGATGTAGTACCCTCCCGCGAA 486 consensus_6308#0 ------------------------------------------------- consensus_6308#1 CCAGACACGCAGCGCGTACGCGGCCGCCACGCCGGCGAAGGCCAGCCAC 535 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||