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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6309#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1666 fasta sequence
[GCCTTCTCGTCGGCGTCCGATCCCAAAACCCTCGCCGGCGGCATGGGCGACATCGTCCGGCAAATCCTGGGGTGGTTCCCCGGCCATCCCGCCTCCGGAAACGGCGCCACGCTTTCCGCCGCCGAGGGCTACGGCAGCGAGGACCGCGTCAGCGCGCTCCCCGACGACCTTCTCCGCAACATCGTCGCCCGCCTCCCCGTCAAGGACGCGGCTCGCACCGCGGCGCTCGCCTCCCGCTGGCGGCGCGTCTGGAGCTCCACGCCGCTCGTCCTCCGCGACGCCGATCTCCTCTTCTCCGCCGGCGAGGCCGCGGGCGTCGCGGCCGTCGGCCGCGCCCTCGCCGGTCACCCGGGCCCCTTCCGCGTCGTCCACATCGAGCACTGCATGTTCGCGTTCCACCGTCCCGAGCTCGCCGAGTGGGCGCGCCTCGTCGCCGCCAAGGGCGTGGAGGACCTCGTCTTCGTCAACATTCCCGTCCACTACTTCGATGTGCCCCTCCCCGCCGACATCCTCCGCTGCGCCGCTCTCCGCCGCCTCTTCATCGGCAACTGGAATTTCCCGGCCACCTCTGGCTTCCCCCGCGGCGCCGACGTCTTCCCCCACCTCCTGGAGCTCTACATTTGGAACACCGTCATGAGCGCCAGGGACCTCAACCATCTGCTCGCCTGCAGCCCAGTGCTGCAGAGCCTCGCGCTCGCCCTCAACAGCCATCCCAACCGCGTCCGCCTCTGCAGCCAGAGCCTCCAATGCGTGCTTCTTTTCTTGTCTAAGGCGGAGGAGGTCGCCGTGGTGGATGCCCCACTGCTGCAGCGCCTCGTTCTGTGGAAAATATCAACTTCTTATGATACAGATGATGAGTTGCCAGTAAAGATTAGGCTTGCTTGTGCACCGGAGCTACAGGTCCTGGGCTATCTGGAGCCAAGAGCTCACCAGCTGCAGATTGGCGAAACCATCATCAAGGCTGACACAAAGGTGATTCCAAGCTCCATGGTTCCGAGTATCAAGGTATTGGCCTTGAGGGTGAATTTTTGTGTGCAAGAGGAGATCGCTATGCTGGTCAGCTTCCTCAGATGCTTTCCCAATGTTGAAACACTGCACATCGAGTCTGATATAGATGATGAGTTCACTGGCCAGCCCCATGCCAAGTTCTGGCAGGAGGTCTGTCCTGTTGAATGTATCAATTCACACGTCAAGAAGATTGTCTTTCATGATTTTCATGGGGACAAATGCGAGCTTGAATTCATCGATTTCATCGCCAGGACAGCACAGGAGCTTCAGGCTTTACTGCTTATGTTGACCAGTAAAACGTATGGTCCTGTTGTTGATGTGGATGAAGTGAACAGCCAATTGGGCGTCCTGTCATTTGCATCTGAAGAGTGCATAACGTCGCTGCTTGGGCCTAAAGTGCAGATGGTTCACATATTCCACAGATCATTGGATCTTTCTGTGGATGACCCTTTCCTCTGATGAACTTGAATGCGCTAGCTGGATAAATATTCCTTGATCTTTGCCTTATTATGGAAACAGTTACCCTTATGTTGCAGTGTTGCCTAGTTAGGCACTCTCTTGTTGTTAATGTGCTTCCTCTGAGATAGGGCTAGTAGTTTCAATATTACTAAGTGGCTGTAAGCGTTTAAATTTGTAGTACTATGGTTTACTGCAAGGA]
[+] EMBL AK069151 [GCCTTCTCGTCGGCGTCCGATCCCAAAACCCTCGCCGGCGGCATGGGCGACATCGTCCGGCAAATCCTGGGGTGGTTCCCCGGCCATCCCGCCTCCGGAAACGGCGCCACGCTTTCCGCCGCCGAGGGCTACGGCAGCGAGGACCGCGTCAGCGCGCTCCCCGACGACCTTCTCCGCAACATCGTCGCCCGCCTCCCCGTCAAGGACGCGGCTCGCACCGCGGCGCTCGCCTCCCGCTGGCGGCGCGTCTGGAGCTCCACGCCGCTCGTCCTCCGCGACGCCGATCTCCTCTTCTCCGCCGGCGAGGCCGCGGGCGTCGCGGCCGTCGGCCGCGCCCTCGCCGGTCACCCGGGCCCCTTCCGCGTCGTCCACATCGAGCACTGCATGTTCGCGTTCCACCGTCCCGAGCTCGCCGAGTGGGCGCGCCTCGTCGCCGCCAAGGGCGTGGAGGACCTCGTCTTCGTCAACATTCCCGTCCACTACTTCGATGTGCCCCTCCCCGCCGACATCCTCCGCTGCGCCGCTCTCCGCCGCCTCTTCATCGGCAACTGGAATTTCCCGGCCACCTCTGGCTTCCCCCGCGGCGCCGACGTCTTCCCCCACCTCCTGGAGCTCTACATTTGGAACACCGTCATGAGCGCCAGGGACCTCAACCATCTGCTCGCCTGCAGCCCAGTGCTGCAGAGCCTCGCGCTCGCCCTCAACAGCCATCCCAACCGCGTCCGCCTCTGCAGCCAGAGCCTCCAATGCGTGCTTCTTTTCTTGTCTAAGGCGGAGGAGGTCGCCGTGGTGGATGCCCCACTGCTGCAGCGCCTCGTTCTGTGGAAAATATCAACTTCTTATGATACAGATGATGAGTTGCCAGTAAAGATTAGGCTTGCTTGTGCACCGGAGCTACAGGTCCTGGGCTATCTGGAGCCAAGAGCTCACCAGCTGCAGATTGGCGAAACCATCATCAAGGCTGACACAAAGGTGATTCCAAGCTCCATGGTTCCGAGTATCAAGGTATTGGCCTTGAGGGTGAATTTTTGTGTGCAAGAGGAGATCGCTATGCTGGTCAGCTTCCTCAGATGCTTTCCCAATGTTGAAACACTGCACATCGAGTCTGATATAGATGATGAGTTCACTGGCCAGCCCCATGCCAAGTTCTGGCAGGAGGTCTGTCCTGTTGAATGTATCAATTCACACGTCAAGAAGATTGTCTTTCATGATTTTCATGGGGACAAATGCGAGCTTGAATTCATCGATTTCATCGCCAGGACAGCACAGGAGCTTCAGGCTTTACTGCTTATGTTGACCAGTAAAACGTATGGTCCTGTTGTTGATGTGGATGAAGTGAACAGCCAATTGGGCGTCCTGTCATTTGCATCTGAAGAGTGCATAACGTCGCTGCTTGGGCCTAAAGTGCAGATGGTTCACATATTCCACAGATCATTGGATCTTTCTGTGGATGACCCTTTCCTCTGATGAACTTGAATGCGCTAGCTGGATAAATATTCCTTGATCTTTGCCTTATTATGGAAACAGTTACCCTTATGTTGCAGTGTTGCCTAGTTAGGCACTCTCTTGTTGTTAATGTGCTTCCTCTGAGATAGGGCTAGTAGTTTCAATATTACTAAGTGGCTGTAAGCGTTTAAATTTGTAGTACTATGGTTTACTGCAAGGA]
consensusID : consensus_6309#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1109 fasta sequence
[GATTGCTTCTTTATACTGTACTGACGATGGTAGAACTGTACTACAGTATAGAATTCAGTCTAGGTTCTTCAGACTTGCCGATGGCTTGAACAAGAATAAAAACAGAGACACCTTTCGAACTGAAGAAGCAACCATCAAAATAAAAAGGCTCGTGAATTACAGTATCTTGGAGCTGAAGAAGCAATGTTCAGCTTTCCATCCACACTAGCCGCGGCAACCCCCTAGCCTCCGCCGCCGCCGCGCCCACCTTCTTCCCCGACGCCTAGGACGACGACGACGACAGCGCCACGTCCAAGGCCGCCTCCGGTGGTTCCCCGGCCATCCCGCCTCCGACAACGGCGCCACGCTTTCCGCCGCCGAGGGCTACGACGGCGAGGACCGCGTCAGCGCACTCCCCGACGACCTCCTCGTCGCCCGCCTCCCGTCAAGGACGCGACTCGCACCGCCGCGCTCGCCTTCCGCTGGCGGCGCGTCTGGAGCTCCACGCCGCTCGTCCTCCGCGGCAAGCCCCTTGTGCGCCGGCGTGGAGGGCCCTAGGGGCGGCGAGGTCGACGATGGCCGCCGCCCACGGCGAGGTCCCCGTGGAGGCGGTGGTGGCCAGCGCGTGGAGGAAGCGCGGCGGCGGCGGCGCTGGTCGCCGATCTCCTCCTCTCCGCCGCCGAGGCCGTGGGCGTTGCAGCCGTCGGCCGCGCCCTCGCCGGTCACCCAGACCCCTTCCGCGTCGTGCACCGGTCCGAGCTCGCCGGGTCCTCAACCATCTGCTTGCCTGCAAGCCTCGCGCTCGCGCTCAACAGGCAGAGAGAGAGAGAGAGGAGGAACCGAGGAGCAGCTGACGTGGCATTCTGACATATGGGACCCACGTTGGTTCCATGCTGACTCAGCCGTCACATAGACCAAAACCGGGGTCAAAACCACCGAAGAATCTCGGGTGACCGGTTTTGTATAGTTAAGGGACCCTATATATCTGTTTTTGCGGTTCGATGACGTTTTTTTATCTCACTGACAAGTTGAGGGACCTTGGGTGTACCTGTTCCTTTGTGTTATAAACATATCACAAAACTACAGACTTAGTCATAAATAAATTTATAAAAAAGGACTACATATTTTAG]
[-] EMBL AK062616 [GATTGCTTCTTTATACTGTACTGACGATGGTAGAACTGTACTACAGTATAGAATTCAGTCTAGGTTCTTCAGACTTGCCGATGGCTTGAACAAGAATAAAAACAGAGACACCTTTCGAACTGAAGAAGCAACCATCAAAATAAAAAGGCTCGTGAATTACAGTATCTTGGAGCTGAAGAAGCAATGTTCAGCTTTCCATCCACACTAGCCGCGGCAACCCCCTAGCCTCCGCCGCCGCCGCGCCCACCTTCTTCCCCGACGCCTAGGACGACGACGACGACAGCGCCACGTCCAAGGCCGCCTCCGGTGGTTCCCCGGCCATCCCGCCTCCGACAACGGCGCCACGCTTTCCGCCGCCGAGGGCTACGACGGCGAGGACCGCGTCAGCGCACTCCCCGACGACCTCCTCGTCGCCCGCCTCCCGTCAAGGACGCGACTCGCACCGCCGCGCTCGCCTTCCGCTGGCGGCGCGTCTGGAGCTCCACGCCGCTCGTCCTCCGCGGCAAGCCCCTTGTGCGCCGGCGTGGAGGGCCCTAGGGGCGGCGAGGTCGACGATGGCCGCCGCCCACGGCGAGGTCCCCGTGGAGGCGGTGGTGGCCAGCGCGTGGAGGAAGCGCGGCGGCGGCGGCGCTGGTCGCCGATCTCCTCCTCTCCGCCGCCGAGGCCGTGGGCGTTGCAGCCGTCGGCCGCGCCCTCGCCGGTCACCCAGACCCCTTCCGCGTCGTGCACCGGTCCGAGCTCGCCGGGTCCTCAACCATCTGCTTGCCT ]
[-] EMBL CA753116 [ CTTGAACGAGAATAAAGACAGAGACACCTTTCGAAGTGAAGAAGCAACCATCAAAATAAAAAGGCTCGTGAATTACAGTATCTTGGAGCTGAAGAAGCAATGTTCAGCTTTCCATCCACACTAGCCGCGGCAACCCCCTAGCCTCCGCCGCCGCCGCGCCCACCTTCTTCCCCGACGCCTAGGACGACGACGACGACAGCGCCACGTCCAAGGCCGCCTCCGGTGGTTCCCCGGCCATCCCGCCTCCGACAACGGCGCCACGCTTTCCGCCGCCGAGGGCTACGACGGCGAGGACCGCGTCAGCGCGCTCCCCGACGACCTCCTCGTCGCCCGCCTCCCGTCAAGGACGCGACTCGCACCGCCGCGCTCGCCTCCCGCTGGCGGCGCGTCTGGAGCTCCACGCCGCTCGTCCTCCGCGGCAAGCCCCTTGTGCGCCGGCGTGGAGGGCCCTAGGGGCGGCGTGGTCGACGATGGCCGCCGCCCACGGCGAGGTCCCCGTGGAGGCGGTGGTG ]
[+] EMBL AK063241 [ ATGTTCAGCTTTCCATCCACACTAGCCGCGGCAACCCCCTAGCCTCCGCCGCCGCCGCGCCCACCTTCTTCCCCGACGCCTAGGACGACGACGACGACAGCGCCACGTCCAAGGCCGCCTCCGGTGGTTCCCCGGCCATCCCGCCTCCGACAACGGCGCCACGCTTTCCGCCGCCGAGGGCTACGACGGCGAGGACCGCGTCAGCGCACTCCCCGACGACCTCCTCGTCGCCCGCCTCCCGTCAAGGACGCGACTCGCACCGCCGCGCTCGCCTTCCGCTGGCGGCGCGTCTGGAGCTCCACGCCGCTCGTCCTCCGCGGCAAGCCCCTTGTGCGCCGGCGTGGAGGGCCCTAGGGGCGGCGAGGTCGACGATGGCCGCCGCCCACGGCGAGGTCCCCGTGGAGGCGGTGGTGGCCAGCGCGTGGAGGAAGCGCGGCGGCGGCGGCGCTGGTCGCCGATCTCCTCCTCTCCGCCGCCGAGGCCGTGGGCGTTGCAGCCGTCGGCCGCGCCCTCGCCGGTCACCCAGACCCCTTCCGCGTCGTGCACCGGTCCGAGCTCGCCGGGTCCTCAACCATCTGCTTGCCTGCAAGCCTCGCGCTCGCGCTCAACAGGCAGAGAGAGAGAGAGAGGAGGAACCGAGGAGCAGCTGACGTGGCATTCTGACATATGGGACCCACGTTGGTTCCATGCTGACTCAGCCGTCACATAGACCAAAACCGGGGTCAAAACCACCGAAGAATCTCGGGTGACCGGTTTTGTATAGTTAAGGGACCCTATATATCTGTTTTTGCGGTTCGATGACGTTTTTTTATCTCACTGACAAGTTGAGGGACCTTGGGTGTACCTGTTCCTTTGTGTTATAAACATATCACAAAACTACAGACTTAGTCATAAATAAATTTATAAAAAAGGACTACATATTTTAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6309#0 ----GCCTTCTCGT-CGGCGTC--CGATCCCAAAACCCTCGCCGGCGGCATGGGCGACAT 53
consensus_6309#1 GATTGCTTCTTTATACTGTACTGACGATGGTAGAACTGTA--CTACAGTATAGAATTCA- 57
** * * * * * **** * *** * * * * ** * **
consensus_6309#0 CGTCCGGCAAATCCTGGGGTGGTTCCCCGGCCATCCCGCCTCCGGAAACGGCGCCACGCT 113
consensus_6309#1 -GTCTAG--GTTCTTCAGACTTGCCGATGGCTTGAACAAGAATAAAAACAGAGACAC-CT 113
*** * ** * * * *** * **** * * *** **
consensus_6309#0 TTCCGCCGCCGAGGGCTACGGCAGCGAGGACCGCGTCAGCGCGCTCCCCGACGACCTTCT 173
consensus_6309#1 TTCGAACTGAAGAAGCAACCATCAAAATAAAAAGGCTCGTGAATTAC---AGTATCTTGG 170
*** * ** ** * * * * * * * * * ***
consensus_6309#0 --CCGCAACATCGTCGCCCGCCTCCCCGTCAAGGACGCGGCTCGCACCGCGGCGCTCGCC 231
consensus_6309#1 AGCTGAAGAAGCAATGTTCAGCTTTCCATC---CACACTAGCCGCGGCAACCCCCTAGCC 227
* * * * * * * ** ** ** ** * *** * * ** ***
consensus_6309#0 TCCCGCTGGCGGCGCGTCTGGAGCTCCACGCCGCTCGTCCTCCGCGACGCCGATCTCCTC 291
consensus_6309#1 TCC-GCCGCCGCCGCGCCCA-----CCTTCTTCCCCGACGCCTAGGACGACGACGACGAC 281
*** ** * ** **** * ** * ** * * **** *** * *
consensus_6309#0 TTCTCCGCCGGCGAGGCCGCGGGCGTCGCGGCCGTCGGCCGCGCCCTCGCCGGTCACCCG 351
consensus_6309#1 AGCGCCACGTCCAAGGCCGCCTCCGGTG-GTTCCCCGGCCATCCCGCCTCCGACAACGGC 340
* ** * * ******* ** * * * ***** ** * *** **
consensus_6309#0 GGCCCCTTCCGCGTCGTCCACATCGAGCACTGC-ATGTTCGCGTTCCACCGTCCCGAGCT 410
consensus_6309#1 GCCACGCTTTCCGCCGCCGAGGGCTACGACGGCGAGGACCGCGTCAGCGCACTCCCCGAC 400
* * * * ** ** * * * * ** ** * * ***** * ** *
consensus_6309#0 CGCCGAGTGGGCGCGCCTCGTCGCCGCCAAGGGCGTGGAGGACCTCGTCTTCGTCAACAT 470
consensus_6309#1 GACCTCCTCGTCGC-CCGCCTC-CCGTCAAGGACGCGACTCGCACCGCCGCGCTCGCCTT 458
** * * *** ** * ** *** ***** ** * * ** * ** * *
consensus_6309#0 TCCCGTCCACTACTTCGATGTGCCCCTCCCCGCCGACATCCTCCGCTGCGCCGCTCTCCG 530
consensus_6309#1 CCGCTGGCGGCGCGTCTG-GAGCTCCACGCCGCT--CGTCCTCCGCGGCAAGCCCCTTGT 515
* * * * ** * ** ** * **** * ******** ** * **
consensus_6309#0 CCGCCT-CTTCATCGGCAACTGGAATTTCCCGGCCACCTCTGGCTTCCCCCGCGGCGCCG 589
consensus_6309#1 GCGCCGGCGTGGAGGGCCCTAGGGGCGGCGAGGTCGACGATGGCCGCCGCCC--ACGGCG 573
**** * * *** ** * ** * * **** ** ** ** **
consensus_6309#0 ACGTCTTCCCCCACCTCCTGGAGCTCTACATTTGGAACACCGTCATGAGCGCCAGGGACC 649
consensus_6309#1 AGGTCCCCGTGGAGGCGGTGGTGGCCAGCGCGTGGAGGA--AGCGCG-GCGGCGGCGGCG 630
* *** * * *** * * * **** * * * *** * * * *
consensus_6309#0 TCAACCATCTGCTCGCCTGCAGCCCAGTGCTGCAGAGCCTCGCGCTCGCCCTCAACAGCC 709
consensus_6309#1 CTGGTCGCC-GATCTCCTCCTCTCC---GCCGCCGAGGC-CGTGGGCGTT----GCAGCC 681
* * * ** *** * ** ** ** *** * ** * ** *****
consensus_6309#0 ATCCCAACCGCGTCCGCCTCTGCAGCCAGAGCCTCCAATGCGTGCTTCTTTTCTTGTCTA 769
consensus_6309#1 GTC--GGCCGCGCCCTCGCCGGTCACCCAGACCCCTTCCGCG---TCGTGCACCGGTCCG 736
** ***** ** * * * ** ** * *** * * * ***
consensus_6309#0 AGGCGGAGGAGGTCGCCGTGGTGGATGCCCCACTGCTGCAGCGCCTCGTTCTGTGGAAAA 829
consensus_6309#1 AGCTCGCCGGGTCCTCAACCAT--CTGCTTGCCTGCA--AGCCTCGCGCTC-GCGCTCAA 791
** * * * * * * *** **** *** * ** ** * * **
consensus_6309#0 TATCAACTTCTTATGATACAGATGATGAGTTGCCAGTAAAGATTAGGCTTGCTTGTGCAC 889
consensus_6309#1 CAGGCA--------GAGAGAGAGAGAGAGGAGGAACCGAGGAGCAG-CTGACGTGGCATT 842
* * ** * *** *** * * * ** ** ** * **
consensus_6309#0 CGGAGCTACAGGTCCTGGGCTATCTGGAGCCAAGAGCTCACCAGCTGCAGATTGGCGAAA 949
consensus_6309#1 CTGACATATGGGACCCACGTTGGTTCCATGCTG--ACTCAGCCGTCACATAG-ACCAAAA 899
* ** ** ** ** * * * * * **** * * ** * * ***
consensus_6309#0 CCATCATCAAGGCTGACACAAAGGTGATTCCAAGCTCCATGGTTCCGAGTA-TCAAGGTA 1008
consensus_6309#1 CCGGGGTCAAAACCACCGAAGA----ATCTCGGGTGAC-CGGTTTTGTATAGTTAAGG-- 952
** **** * * * * ** * * * **** * ** * ****
consensus_6309#0 TTGGCCTTGAGGGTGAATTTTTGTGTGCAAGAGGAGATCGCTATGCTGGTCAGCTTCCTC 1068
consensus_6309#1 --GACCCTATATATCTGTTTTTGCGGTTCGATGACGTTTTTTTATCTCACTGACAAGTTG 1010
* ** * * ****** * * * * * ** * *
consensus_6309#0 AGATGCTTTCCCAATGTTGAAACACTGCACATCGAGTCTGATATAGATGATGAGTTCACT 1128
consensus_6309#1 AGGGACCTTG--GGTGT----ACCTGTTCCTTTGTGTTATAAACATATCACAAAACTACA 1064
** * ** *** ** * * * ** * * * ** * * **
consensus_6309#0 GGCCAGCCCCATGCCAAGTTCTGGCAGGAGGTCTGTCCTGTTGAATGTATCAATTCACAC 1188
consensus_6309#1 GACTTAGTCATAAATAAATTTATAAAAAAGGACTACATATTTTAG--------------- 1109
* * * ** ** * *** ** ** *
consensus_6309#0 GTCAAGAAGATTGTCTTTCATGATTTTCATGGGGACAAATGCGAGCTTGAATTCATCGAT 1248
consensus_6309#1 ------------------------------------------------------------
consensus_6309#0 TTCATCGCCAGGACAGCACAGGAGCTTCAGGCTTTACTGCTTATGTTGACCAGTAAAACG 1308
consensus_6309#1 ------------------------------------------------------------
consensus_6309#0 TATGGTCCTGTTGTTGATGTGGATGAAGTGAACAGCCAATTGGGCGTCCTGTCATTTGCA 1368
consensus_6309#1 ------------------------------------------------------------
consensus_6309#0 TCTGAAGAGTGCATAACGTCGCTGCTTGGGCCTAAAGTGCAGATGGTTCACATATTCCAC 1428
consensus_6309#1 ------------------------------------------------------------
consensus_6309#0 AGATCATTGGATCTTTCTGTGGATGACCCTTTCCTCTGATGAACTTGAATGCGCTAGCTG 1488
consensus_6309#1 ------------------------------------------------------------
consensus_6309#0 GATAAATATTCCTTGATCTTTGCCTTATTATGGAAACAGTTACCCTTATGTTGCAGTGTT 1548
consensus_6309#1 ------------------------------------------------------------
consensus_6309#0 GCCTAGTTAGGCACTCTCTTGTTGTTAATGTGCTTCCTCTGAGATAGGGCTAGTAGTTTC 1608
consensus_6309#1 ------------------------------------------------------------
consensus_6309#0 AATATTACTAAGTGGCTGTAAGCGTTTAAATTTGTAGTACTATGGTTTACTGCAAGGA 1666
consensus_6309#1 ----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||