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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6310 cluster # 6310       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6310#0 length = 1044 sequences # 4  

consensusID : consensus_6310#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1044
fasta sequence
                              [GACGAGACAAGGGGGACTCATTGTGGTTTCACATGTACACTAGCGGACATAATAAATCAAATGTCCTTAAATGGATTAAGGCTAAGAAAGTATTTTCAAGACAATATGTTTTCGTTCCTATTGTTATATGGGGACACTGGAACCTCCTTGTCTTATGCAACTTTGGTGAGACAGACTACCTGGGTACTGACAAAGGACCACGCATGCTGCTGCTGGATTCACTTAAAACAACAAATCCGACAAGGTTGCGATCGAATATCAAAAGATTTATTGCTGATATTTTTAAAACTGAAGAGCGGGAAGAGAATGAGCAATTCATTAACAAAATCTGTCTTGAGTTTCCTGAGGTGCCACAGCAGAATGGGGATGAATGTGGTATATATGTTCTTTACTTTATCTACTGTTTTCTTCAGAACAAAGCACTGGGAGAAGATTTCAGCCAGCTGTTTGATGATCCAGAAGAATGGGAGAACTTCCGCAAGGGTGTTCATTCATTCCGAGAGAACAGAGAAAATGAAATTGCAGAATAGGTGAGCATGGTGGATGGCAATATTTCACCAGCTATATGTAGTTATCAGAATACAACAGCAAATTACCTGTTCATCTTCCTGGTGGCACA-ACCT-GAAGAAGTTTGAAGACTGTCAAGAATTT-GTTTGTCATACA-GTTCATGCCGTCAAGAGGAAGATGGCTATTTCTCAGATACAAAGCAGCATCAGTGTCAACCTAGCGCT-GTCGAGATCTTTCGTTGATCCAGGCTATTGATAAGCTGAAAGCCCCTTTTTTGGATAGGGTTCCATCAACATTCAGCACCTGTTAGCCGTATAGAGTCACAGATGATTCATTCCTTAAAAAAAAAAGAATATTTAAACGATTTGATACTATACTTATGCATTGTCTAGAAATGCTGGGTGGGATTTCCACCACCTTTCAGAATATTTAGCTGGGGGTTATATGATGTACATCAATATGTTTGTATCAGATCTTAAAGATGGTGTATTCCCCCTTCCAGATAATATATTACAGTTTCGTAAAAAAAAAAAAAAA]

[+] EMBL CA764801             [GACGAGACAAGGGGGACTCATTGTGGTTTCACATGTACACTAGCGGACATAATAAATCAAATGTCCTTAAATGGATTAAGGCTAAGAAAGTATTTTCAAGACAATATGTTTTCGTTCCTATTGTTATATGGGGACACTGGAACCTCCTTGTCTTATGCAACTTTGGTGAGACAGACTACCTGGGTACTGACAAAGGACCACGCATGCTGCTGCTGGATTCACTTAAAACAACAAATCCGACAAGGTTGCGATCGAATATCAAAAGATTTATTGCTGATATTTTTAAAACTGAAGAGCGGGAAGAGAATGAGCAATTCATTAACAAAATCTGTCTTGAGTTTCCTGAGGTGCCACAGCAGAATGGGGATGAATGTGGTATATATGTTCTTTACTTTATCTACTGTTTTCTTCAGAACAAAGCACTGGGAGAAGATTTCAGCCAGCTGTTTGATGATCCAGAAGAATGGGAGAACTTCCGCAAGGGTGTTCATTCATTCCGAGAGAACAGAGAAAATGAAATTGCAGAATAGGTGAGCATGGTGGATGGCAATATTTCACCAGCTATATGTAGTTATCAGAATACAACAGCAAATTACCTGTTCATCTTCCTGGTGGCACA ACCTGGAAGAAGTTTGAAGACTGTCAAGAATTT GTTTGTCATACA GTTCATGCCGTCAAGAGGAAGATGGCTATTTCTCAGATACAAAGCAGCATCAGTGTCAACCTAGCGCT GTCGAGATCTTTCGNTGATCCAGGCTATTGATAAGCTGAAAGCCCCTTTTTTGGATAGGGGTNCATCAACATTCAGCACCTGNTAGCCGTAT                                                                                                                                                                                                                             ]
[-] EMBL CA760924             [                                                                                                                                                                                                                                                                                                                                                                                                                          CAGAACAAAGCACTGGGAGAAGATTTCAGCCAGCTGTTTGATGATCCAGAAGAATGGGAGAACTTCCGCAAGGGTGTTCATTCATTCCGAGAGAACAGAGAAAATGAAATTGCAGAATAGGTGAGCATGGTGGATGGCAATATTTCACCAGCTATATGTAGTTATCAGAATACAACAGCAAATTACCTGTTCATTTTCCTGGTGGCACA ACCT GAAGAAGTTTGAAGACTGTCAAGAATTT GTTTGTTATACA GTTCATGCCGTCAAGAGGAAGATGGCTATTTTTCAGATACAAAGCAGCATCAGTGTCAACCTAGCGCT GTCGAGATCTTTCGTTGATCCAGGCTATTGATAAGCTGAAAGCCCC TTTTTGGATAGGGTTCCATCAACATTCAGCACCTGTTAGCCGTATAGAGTCACAGATGATTCATTCCTTAAAAAAAAAAGAATATTTAAACGATTTGATACTATACTTATGCATTGTCTAGAAATGCTGGGTGGGATTTCCACCACCTTTCAGAATATTTAGCTGGGGGTTATATGATGTACATCAATATGTTTGTATCAGATCTTAAAGATGGTGTATTCCCCCTTCCAGATAATATATTACAGTTTCGTAAAAAAAAAAAAAAA]
[+] EMBL AK058342             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TGCAGAATAGGTGAGCATGGTGGATGGCAATATTTCACCAGCTATATGTAGTTATCAGAATACAACAGCAAATTACCTGTTCATCTTCCTGGTGGCACA ACCT GAAGAAGTTTGAAGACTGTCAAGAATTT GTTTGTCATACA GTTCATGCCGTCAAGAGGAAGATGGCTATTTCTCAGATACAAAGCAGCATCAGTGTCAACCTAGCGCT GTCGAGATCTTTCGTTGATCCAGGCTATTGATAAGCTGAAAGCCCCTTTTTTGGATAGGGTTCCATCAACATTCAGCACCTGTTAGCCGTATAGAGTCACAGATGA                                                                                                                                                                                                               ]
[+] EMBL BI801296             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ATGTAGTTATCAGAATAC ACAGCAAATTACCTGTTCATCTTCCTGGTGGCACATACCT GAAGAAGTTTGAAGACTGTCAAGAATTTGGTTTGTCATACACGTTCATGCCGTCAAGAGGAAGATGGCTATTTCTCAGATAC AAGCAGCATCAGTGTCAACCTAGCGCTGGTCGAGATCTTTCATTGATCCAGGCTATTGATAAGCTGAAAGCCCCTTTTTTGGATAGGGTTCCATCAACATTCAGCACCTGTTAGCCGTATAGAGTCACAGATGATTCATTCCTTAAAAA                                                                                                                                                                                                ]


>consensus_6310#0 GACGAGACAAGGGGGACTCATTGTGGTTTCACATGTACACTAGCGGACATAATAAATCAA ATGTCCTTAAATGGATTAAGGCTAAGAAAGTATTTTCAAGACAATATGTTTTCGTTCCTA TTGTTATATGGGGACACTGGAACCTCCTTGTCTTATGCAACTTTGGTGAGACAGACTACC TGGGTACTGACAAAGGACCACGCATGCTGCTGCTGGATTCACTTAAAACAACAAATCCGA CAAGGTTGCGATCGAATATCAAAAGATTTATTGCTGATATTTTTAAAACTGAAGAGCGGG AAGAGAATGAGCAATTCATTAACAAAATCTGTCTTGAGTTTCCTGAGGTGCCACAGCAGA ATGGGGATGAATGTGGTATATATGTTCTTTACTTTATCTACTGTTTTCTTCAGAACAAAG CACTGGGAGAAGATTTCAGCCAGCTGTTTGATGATCCAGAAGAATGGGAGAACTTCCGCA AGGGTGTTCATTCATTCCGAGAGAACAGAGAAAATGAAATTGCAGAATAGGTGAGCATGG TGGATGGCAATATTTCACCAGCTATATGTAGTTATCAGAATACAACAGCAAATTACCTGT TCATCTTCCTGGTGGCACAACCTGAAGAAGTTTGAAGACTGTCAAGAATTTGTTTGTCAT ACAGTTCATGCCGTCAAGAGGAAGATGGCTATTTCTCAGATACAAAGCAGCATCAGTGTC AACCTAGCGCTGTCGAGATCTTTCGTTGATCCAGGCTATTGATAAGCTGAAAGCCCCTTT TTTGGATAGGGTTCCATCAACATTCAGCACCTGTTAGCCGTATAGAGTCACAGATGATTC ATTCCTTAAAAAAAAAAGAATATTTAAACGATTTGATACTATACTTATGCATTGTCTAGA AATGCTGGGTGGGATTTCCACCACCTTTCAGAATATTTAGCTGGGGGTTATATGATGTAC ATCAATATGTTTGTATCAGATCTTAAAGATGGTGTATTCCCCCTTCCAGATAATATATTA CAGTTTCGTAAAAAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)