cluster # 6314

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Oryza sativa
cluster # 6314 cluster # 6314 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6314#0 length = 613 sequences # 3

consensus_6314#1 length = 379 sequences # 1

consensusID : consensus_6314#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 613
fasta sequence

                              [AGCAAACTGAGCGAGGAGCAGAGCCATGCGTCGCGAGGGGAGGCAGCGCGGGTGGGTGTGCGTGTACGACCGCGCCCTGGTCGACCCCGAGGGGAAGCGCCGCGTGGTGGGCGCGGTGGCGGCGCCGGCGACGGTGGCCAACGGCGGGTTCATCAGGGCGCCGCGGAAGCCAACCAACCACTCCAAGTTCACCGGCGGCCGCGCCTTCAGGGAGCTCGCCAGCGGCAAGGGCGCCTGCAGCGGCGGGCCGGCAGCGTCGACGACGGGTGGTAAAGGGAGGCACAAGTTCAAGCACGACGAGATCAAGGCGTACTACCTCGAACTCGAAGCCGGCGCTGATGATGCTGTCGATGAGCTAGGATCGCTATGAGTGACATGGATTCGTGGAGGCAGATGGCATGCATCACCGGAACGGCGGCACGGCGGCATGCAGCTGCCACCGTCGATAGGAGAATTGCAGCGGCGGCGCTAATTGACATGGCAGTTTCCTGTTTTGGTGTGTATGTGTGTGAGTGTGAGTGAAACTGTGTTGTGAATGTGGATCTTTTTAGTTTGGTGTTTCGTTGAATAATTGAACTTTCTCGCCACAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK062310             [AGCAAACTGAGCGAGGAGCAGAGCCATGCGTCGCGAGGGGAGGCAGCGCGGGTGGGTGTGCGTGTACGACCGCGCCCTGGTCGACCCCGAGGGGAAGCGCCGCGTGGTGGGCGCGGTGGCGGCGCCGGCGACGGTGGCCAACGGCGGGTTCATCAGGGCGCCGCGGAAGCCAACCAACCACTCCAAGTTCACCGGCGGCCGCGCCTTCAGGGAGCTCGCCAGCGGCAAGGGCGCCTGCAGCGGCGGGCCGGCAGCGTCGACGACGGGTGGTAAAGGGAGGCACAAGTTCAAGCACGACGAGATCAAGGCGTACTACCTCGAACTCGAAGCCGGCGCTGATGATGCTGTCGATGAGCTAGGATCGCTATGAGTGACATGGATTCGTGGAGGCAGATGGCATGCATCACCGGAACGGCGGCACGGCGGCATGCAGCTGCCACCGTCGATAGGAGAATTGCAGCGGCGGCGCTAATTGACATGGCAGTTTCCTGTTTTGGTGTGTATGTGTGTGAGTGTGAGTGAAACTGTGTTGTGAATGTGGATCTTTTTAGTTTGGTGTTTCGTTGAATAATTGAACTTTCTCGCCACA                        ]
[+] EMBL AU088590             [                                                                                                                                                                                                                   GAGCTCGCCAGCGGCAAGGGCGCCTGCAGCGGCGGGCCGGCAGCGTCGACGACGGGTGGTAAAGGGAGGCACAAGTTCAAGCACGACGAGATCAAGGCGTACTACCTCGAACTCGAAGCCGGCGCTGATGATGCTGTCGATGAGCTAGGATCGCTATGAGTGACATGGATTCGTGGAGGCAGATGGCATGCATCACCGGAACGGCGGCACGGCGGCATGCAGCTGCCACCGTCGATAGGAGAATTGCAGCGGCGGCGCTAATTGACATGGCAGTTTCCTGTTTTGGTGTGTATGTGTGTGAGTGTGAGTGAAACTGTGTTGTGAATGTGGATCTTTTTAGTTTGGTGTTTCGTTGAATAATTGAACTTTCTCGCCACAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL C97271               [                                                                                                                                                                                                                                                                                                                                                                                   tnACATGGATTCGTGGAGGCAGATGGCATGCATNACCGGAACGGCGGCACGGCGGCATGCAGCTGCCACCGTCGATAGGANAATTGCANCGGCGGCGCTAATTGACATGGCAGTTTCCTGTTTTGGTGTGTATGTGTGTGAGTGTGAGTGAAACTGTGTTGTGAATGTGGATCTTTTTAGTTTGGTGTTTCGTTGAATAATTGAACTTTCTCGCCNCAAAAAAAAAAAAAAAAAAAAAAAA ]




>consensus_6314#0
AGCAAACTGAGCGAGGAGCAGAGCCATGCGTCGCGAGGGGAGGCAGCGCGGGTGGGTGTG
CGTGTACGACCGCGCCCTGGTCGACCCCGAGGGGAAGCGCCGCGTGGTGGGCGCGGTGGC
GGCGCCGGCGACGGTGGCCAACGGCGGGTTCATCAGGGCGCCGCGGAAGCCAACCAACCA
CTCCAAGTTCACCGGCGGCCGCGCCTTCAGGGAGCTCGCCAGCGGCAAGGGCGCCTGCAG
CGGCGGGCCGGCAGCGTCGACGACGGGTGGTAAAGGGAGGCACAAGTTCAAGCACGACGA
GATCAAGGCGTACTACCTCGAACTCGAAGCCGGCGCTGATGATGCTGTCGATGAGCTAGG
ATCGCTATGAGTGACATGGATTCGTGGAGGCAGATGGCATGCATCACCGGAACGGCGGCA
CGGCGGCATGCAGCTGCCACCGTCGATAGGAGAATTGCAGCGGCGGCGCTAATTGACATG
GCAGTTTCCTGTTTTGGTGTGTATGTGTGTGAGTGTGAGTGAAACTGTGTTGTGAATGTG
GATCTTTTTAGTTTGGTGTTTCGTTGAATAATTGAACTTTCTCGCCACAAAAAAAAAAAA
AAAAAAAAAAAAA

consensusID : consensus_6314#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 379
fasta sequence

                              [GGCAAGGGCCCTGCAGCGCGGGCCGGCAGCGTCGACGACGGNTGGTAAAGGGAGGCACAAGTTCAAGCACGACGAGATCAAGGCGTACTACCTCGAACTCGAAGCCGGCGCTGATGATGCTGTCGATGAGCTAGGATCGCTATGAGTGACATGGATTCGTGGAGGCAGATGGCATGCATCACCGGAACGGCGGCACGGCGGCATGCAGCTGCCACCGTCGATAGGAGAATTGCAGCGGCGGCGCTAATTGACATGGCAGTTTCCTGTTTTGGTGTGTATGTGTGTGAGTGTGAGTGAAACTGTGTTGTGAATGTGGATCTTTTTAGTTTGGTGTTTCGTTGANANTANANANNANCNANNCACGNTACACNCNACNCNG]

[-] EMBL C26553               [GGCAAGGGCCCTGCAGCGCGGGCCGGCAGCGTCGACGACGGNTGGTAAAGGGAGGCACAAGTTCAAGCACGACGAGATCAAGGCGTACTACCTCGAACTCGAAGCCGGCGCTGATGATGCTGTCGATGAGCTAGGATCGCTATGAGTGACATGGATTCGTGGAGGCAGATGGCATGCATCACCGGAACGGCGGCACGGCGGCATGCAGCTGCCACCGTCGATAGGAGAATTGCAGCGGCGGCGCTAATTGACATGGCAGTTTCCTGTTTTGGTGTGTATGTGTGTGAGTGTGAGTGAAACTGTGTTGTGAATGTGGATCTTTTTAGTTTGGTGTTTCGTTGANANTANANANNANCNANNCACGNTACACNCNACNCNG]




>consensus_6314#1
GGCAAGGGCCCTGCAGCGCGGGCCGGCAGCGTCGACGACGGNTGGTAAAGGGAGGCACAA
GTTCAAGCACGACGAGATCAAGGCGTACTACCTCGAACTCGAAGCCGGCGCTGATGATGC
TGTCGATGAGCTAGGATCGCTATGAGTGACATGGATTCGTGGAGGCAGATGGCATGCATC
ACCGGAACGGCGGCACGGCGGCATGCAGCTGCCACCGTCGATAGGAGAATTGCAGCGGCG
GCGCTAATTGACATGGCAGTTTCCTGTTTTGGTGTGTATGTGTGTGAGTGTGAGTGAAAC
TGTGTTGTGAATGTGGATCTTTTTAGTTTGGTGTTTCGTTGANANTANANANNANCNANN
CACGNTACACNCNACNCNG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6314#0      AGCAAACTGAGCGAGGAGCAGAGCCATGCGTCGCGAGGGGAGGCAGCGCGGGTGGGTGTG 60
consensus_6314#1      ------------------------------------------------------------
                                                                                  

consensus_6314#0      CGTGTACGACCGCGCCCTGGTCGACCCCGAGGGGAAGCGCCGCGTGGTGGGCGCGGTGGC 120
consensus_6314#1      ------------------------------------------------------------
                                                                                  

consensus_6314#0      GGCGCCGGCGACGGTGGCCAACGGCGGGTTCATCAGGGCGCCGCGGAAGCCAACCAACCA 180
consensus_6314#1      ------------------------------------------------------------
                                                                                  

consensus_6314#0      CTCCAAGTTCACCGGCGGCCGCGCCTTCAGGGAGCTCGCCAGCGGCAAGGGCGCCTGCAG 240
consensus_6314#1      -------------------------------------------GGCAAGGGC-CCTGCAG 16
                                                                 ********* *******

consensus_6314#0      CGGCGGGCCGGCAGCGTCGACGACGGGTGGTAAAGGGAGGCACAAGTTCAAGCACGACGA 300
consensus_6314#1      CG-CGGGCCGGCAGCGTCGACGACGGNTGGTAAAGGGAGGCACAAGTTCAAGCACGACGA 75
                      ** *********************** *********************************

consensus_6314#0      GATCAAGGCGTACTACCTCGAACTCGAAGCCGGCGCTGATGATGCTGTCGATGAGCTAGG 360
consensus_6314#1      GATCAAGGCGTACTACCTCGAACTCGAAGCCGGCGCTGATGATGCTGTCGATGAGCTAGG 135
                      ************************************************************

consensus_6314#0      ATCGCTATGAGTGACATGGATTCGTGGAGGCAGATGGCATGCATCACCGGAACGGCGGCA 420
consensus_6314#1      ATCGCTATGAGTGACATGGATTCGTGGAGGCAGATGGCATGCATCACCGGAACGGCGGCA 195
                      ************************************************************

consensus_6314#0      CGGCGGCATGCAGCTGCCACCGTCGATAGGAGAATTGCAGCGGCGGCGCTAATTGACATG 480
consensus_6314#1      CGGCGGCATGCAGCTGCCACCGTCGATAGGAGAATTGCAGCGGCGGCGCTAATTGACATG 255
                      ************************************************************

consensus_6314#0      GCAGTTTCCTGTTTTGGTGTGTATGTGTGTGAGTGTGAGTGAAACTGTGTTGTGAATGTG 540
consensus_6314#1      GCAGTTTCCTGTTTTGGTGTGTATGTGTGTGAGTGTGAGTGAAACTGTGTTGTGAATGTG 315
                      ************************************************************

consensus_6314#0      GATCTTTTTAGTTTGGTGTTTCGTTGAATAATTGAACTTTCTCGCCACAAAAAAAAAAAA 600
consensus_6314#1      GATCTTTTTAGTTTGGTGTTTCGTTGANANTANANANNANCNANNCACGNTACACNCNAC 375
                      ***************************        *    *    ***   * *    * 

consensus_6314#0      AAAAAAAAAAAAA 613
consensus_6314#1      NCNG--------- 379