Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6317 cluster # 6317       Sequences # 4       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6317#0 length = 1335 sequences # 4  
consensusID : consensus_6317#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1335
fasta sequence 
                              [TCACGCTCCACATCCTCCTCCATCGCCGACGGTTCAATCATGTCGTCGCCGGCGACCGCCGCCGCCGCCGCCGCGTCCTGTGGCGTCCTCCGCCACCACCATCCTCCGGCTTCCCCGCGGCCTCCTCCCACCACCACCACCACCACCTCCCGCCTCCTCCTCGCCTCGCGCTCGCGGGGCCTCCAGCGGCCACTCCGAGTCAACCACGCGCCCCCTCGTCGCCTCCCGCCCACGGCCGCGCGCGCCCAGAGTGCCGCCGCAGCAGGGTACCAGCCGGAGTCGGAGTTCTACAAGGTGGAGGCAATCCTGAGGCCATGGAGGGTGCCTTATGTGTCATCGGGTTTGCTGCAAATGGGGATCAGAGGCGTGACGGTGTCCGACGTGCGGGGTTTCGGCGCACAGGGCGGGTCAACTGAGAGGCATGAAGGGTCAGAATTTGCAGAAGATACATTTATTGATAAAGTTAAGATGGAAATAGTGGTGTCCAAGGATCAGGTTGAAGCTGTTGTTGACAAGATAATTGAAAAGGCAAGAACAGGAGAAATTGGTGATGGAAAAATATTTTTGATACCCGTGTCGGACGTGATC-AGAATACGCACCGGCGAACGAGGGGAGCGAGCGGAGAGGATGGCCGGAGGGCTGGCG-GACA-AGCTGTCCTCAGCAATGCCGATCTCATGAGAGAGCATGTTTCCTGTAGGTACCACTACTGCACTCCCCTGTTGATTAGTGATGATGATGATCATGCCTGTGTGAACTCCAGCAGCAATAATAAAGCT-GGAACGTAATGCCCCTCCAGTCCAGGGCTCCAGGCATCTTACACTGAAAATGTTGTTGCCAGAAACAAACTCAT-GAACTGGATTTCATTATGAACAAAGATGGGGGAACGTGATAGGAGGGGAGGAAGGTAACCGTAGCGTACGGATTCTCGGATGTACTAGACGGTACTAGGGGGGGGGGTGGTGACGACTTGTTGCCTACGGGGTGGGGAGCAGTGACTGAATGTGCGCGCCAGCATTTGCGTTGGATTCAGGCGAATAAGGGGGGCGAGCGTGGAGGAGGGGGTGTAGGGTCGGTTGGCTGGGAGTAAGTGGAGATGTTAGTCGGCGGTTTCGCGGTGCGGTGTGGTAGTGTGGTGTGTGGTGTTCTGTGGTTTGGTCTGTATTGCGGGGGGATGGCCTGAAAGGCACCCCCTTTTTCCGTATGCTCGTCCTTATAAGGTGGCGGCATTATGGTTTGGGATGGTGGTTACGCAGGGAGCGGCTTGTGTGTAGGTGTGCAGATCGTGTGTCGCGGTGGGTGTCTAGTTAGGCCGATTATTCAGTATAGTTATTCACG]

[+] EMBL AK068407             [TCACGCTCCACATCCTCCTCCATCGCCGACGGTTCAATCATGTCGTCGCCGGCGACCGCCGCCGCCGCCGCCGCGTCCTGTGGCGTCCTCCGCCACCACCATCCTCCGGCTTCCCCGCGGCCTCCTCCCACCACCACCACCACCACCTCCCGCCTCCTCCTCGCCTCGCGCTCGCGGGGCCTCCAGCGGCCACTCCGAGTCAACCACGCGCCCCCTCGTCGCCTCCCGCCCACGGCCGCGCGCGCCCAGAGTGCCGCCGCAGCAGGGTACCAGCCGGAGTCGGAGTTCTACAAGGTGGAGGCAATCCTGAGGCCATGGAGGGTGCCTTATGTGTCATCGGGTTTGCTGCAAATGGGGATCAGAGGCGTGACGGTGTCCGACGTGCGGGGTTTCGGCGCACAGGGCGGGTCAACTGAGAGGCATGAAGGGTCAGAATTTGCAGAAGATACATTTATTGATAAAGTTAAGATGGAAATAGTGGTGTCCAAGGATCAGGTTGAAGCTGTTGTTGACAAGATAATTGAAAAGGCAAGAACAGGAGAAATTGGTGATGGAAAAATATTTTTGATACCCGTGTCGGACGTGATC AGAATACGCACCGGCGAACGAGGGGAGCGAGCGGAGAGGATGGCCGGAGGGCTGGCG GACA AGCTGTCCTCAGCAATGCCGATCTCATGAGAGAGCATGTTTCCTGTAGGTACCACTACTGCACTCCCCTGTTGATTAGTGATGATGATGATCATGCCTGTGTGAACTCCAGCAGCAATAATAAAGCT GGAACGTAATGCCCCTCCAGTCCAGGGCTCCAGGCATCTTACACTGAAAATGTTGTTGCCAGAAACAAACTCAT GAACTGGATTTCATTATGAACAAAGATGGGGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AK099152             [TCACGCTCCACATCCTCCTCCATCGCCGACGGTTCAATCATGTCGTCGCCGGCGACCGCCGCCGCCGCCGCCGCGTCCTGTGGCGTCCTCCGCCACCACCATCCTCCGGCTTCCCCGCGGCCTCCTCCCACCACCACCACCACCACCTCCCGCCTCCTCCTCGCCTCGCGCTCGCGGGGCCTCCAGCGGCCACTCCGAGTCAACCACGCGCCCCCTCGTCGCCTCCCGCCCACGGCCGCGCGCGCCCAGAGTGCCGCCGCAGCAGGGTACCAGCCGGAGTCGGAGTTCTACAAGGTGGAGGCAATCCTGAGGCCATGGAGGGTGCCTTATGTGTCATCGGGTTTGCTGCAAATGGGGATCAGAGGCGTGACGGTGTCCGACGTGCGGGGTTTCGGCGCACAGGGCGGGTCAACTGAGAGGCATGAAGGGTCAGAATTTGCAGAAGATACATTTATTGATAAAGTTAAGATGGAAATAGTGGTGTCCAAGGATCAGGTTGAAGCTGTTGTTGACAAGATAATTGAAAAGGCAAGAACAGGAGAAATTGGTGATGGAAAAATATTTTTGATACCCGTGTCGGACGTGATC AGAATACGCACCGGCGAACGAGGGGAGCGAGCGGAGAGGATGGCCGGAGGGCTGGCG GACA AGCTGTCCTCAGCAATGCCGATCTCATGAGAGAGCATGTTTCCTGTAGGTACCACTACTGCACTCCCCTGTTGATTAGTGATGATGATGATCATGCCTGTGTGAACTCCAGCAGCAATAATAAAGCT GGAACGTAATGCCCCTCCAGTCCAGGGCTCCAGGCATCTTACACTGAAAATGTTGTTGCCAGAAACAAACTCAT GAACTGGATTTCATTATGAACAAAGATGGGGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CB685017             [                                                                                                                                                                                                                                                                                                                                                TCGGGTTTGCTGCAAATGGGGATCAGAGGCGTGACGGTGTCCGACGTGCGGGGTTCCGGCGCACAGGGCGGGTCAACTGAGAGGCATGAAGGGTCAGAATTTGCAGAAGATACATTTATTGATAAAGTTAAGATGGAAATAGTGGTGTCCAAGGATCAGGTTGAAGCTGTTGTTGACAAGATAATTGAAAAGGCAAGAACAGGAGAAATTGGTGATGGAAAAATATTTTTGATACCCGTGTCGGACGTGATC AGAATACGCACCGGCGAACGAGGGGAGCGAGCGGAGAGGATGGCCGGAGGGCTGGCG GACA AGCTGTCCTCAGCAATGCCGATCTCATGAGAGAGCATGTTTCCTGTAGGTACCACTACTGCACTCCCCTGTTGATTAGTGATGATGATGATCATGCCTGTGTGAACTCCAGCAGCAATAATAAAGCT GGAACGTAATGCCCCTCCAGTCCAGGGCTCCAGGCATCTTACACTGAAAATGTTGTTGCCAGAAACAAACTCAT GAACTGGATTTCATTATGAACAAAGATGGGGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BE040444             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TTTTTGATGCCCGTGTCGGACGTGATCAAGAATACGCTCCGGCGAACGAGGGGAGCGAGCGGAGAGGATGGCCGGAGGGCTGGCGAGACAGAACTGTCCTCAGCAATGCCGATCTCATGAGAGAGCATGTTTCCTGTATGTACCACTACTGCACTCCCCTGTTGAGGAGTGATGATGATGATCATGCCTGTGTGAACTCCAGCAGCTATAATAAAGCTGGGAACGTAATGCCCCTCCAGTCCAAGGCTCCAGGCATCTTACACTGAAAATGATGGAGCCAGAGACAAACTCATAGAACTGGGTGTGATTCTGAACAAGGATGGGGGAACGTGATAGGAGGGGAGGAAGGTAACCGTAGCGTACGGATTCTCGGATGTACTAGACGGTACTAGGGGGGGGGGTGGTGACGACTTGTTGCCTACGGGGTGGGGAGCAGTGACTGAATGTGCGCGCCAGCATTTGCGTTGGATTCAGGCGAATAAGGGGGGCGAGCGTGGAGGAGGGGGTGTAGGGTCGGTTGGCTGGGAGTAAGTGGAGATGTTAGTCGGCGGTTTCGCGGTGCGGTGTGGTAGTGTGGTGTGTGGTGTTCTGTGGTTTGGTCTGTATTGCGGGGGGATGGCCTGAAAGGCACCCCCTTTTTCCGTATGCTCGTCCTTATAAGGTGGCGGCATTATGGTTTGGGATGGTGGTTACGCAGGGAGCGGCTTGTGTGTAGGTGTGCAGATCGTGTGTCGCGGTGGGTGTCTAGTTAGGCCGATTATTCAGTATAGTTATTCACG]




>consensus_6317#0
TCACGCTCCACATCCTCCTCCATCGCCGACGGTTCAATCATGTCGTCGCCGGCGACCGCC
GCCGCCGCCGCCGCGTCCTGTGGCGTCCTCCGCCACCACCATCCTCCGGCTTCCCCGCGG
CCTCCTCCCACCACCACCACCACCACCTCCCGCCTCCTCCTCGCCTCGCGCTCGCGGGGC
CTCCAGCGGCCACTCCGAGTCAACCACGCGCCCCCTCGTCGCCTCCCGCCCACGGCCGCG
CGCGCCCAGAGTGCCGCCGCAGCAGGGTACCAGCCGGAGTCGGAGTTCTACAAGGTGGAG
GCAATCCTGAGGCCATGGAGGGTGCCTTATGTGTCATCGGGTTTGCTGCAAATGGGGATC
AGAGGCGTGACGGTGTCCGACGTGCGGGGTTTCGGCGCACAGGGCGGGTCAACTGAGAGG
CATGAAGGGTCAGAATTTGCAGAAGATACATTTATTGATAAAGTTAAGATGGAAATAGTG
GTGTCCAAGGATCAGGTTGAAGCTGTTGTTGACAAGATAATTGAAAAGGCAAGAACAGGA
GAAATTGGTGATGGAAAAATATTTTTGATACCCGTGTCGGACGTGATCAGAATACGCACC
GGCGAACGAGGGGAGCGAGCGGAGAGGATGGCCGGAGGGCTGGCGGACAAGCTGTCCTCA
GCAATGCCGATCTCATGAGAGAGCATGTTTCCTGTAGGTACCACTACTGCACTCCCCTGT
TGATTAGTGATGATGATGATCATGCCTGTGTGAACTCCAGCAGCAATAATAAAGCTGGAA
CGTAATGCCCCTCCAGTCCAGGGCTCCAGGCATCTTACACTGAAAATGTTGTTGCCAGAA
ACAAACTCATGAACTGGATTTCATTATGAACAAAGATGGGGGAACGTGATAGGAGGGGAG
GAAGGTAACCGTAGCGTACGGATTCTCGGATGTACTAGACGGTACTAGGGGGGGGGGTGG
TGACGACTTGTTGCCTACGGGGTGGGGAGCAGTGACTGAATGTGCGCGCCAGCATTTGCG
TTGGATTCAGGCGAATAAGGGGGGCGAGCGTGGAGGAGGGGGTGTAGGGTCGGTTGGCTG
GGAGTAAGTGGAGATGTTAGTCGGCGGTTTCGCGGTGCGGTGTGGTAGTGTGGTGTGTGG
TGTTCTGTGGTTTGGTCTGTATTGCGGGGGGATGGCCTGAAAGGCACCCCCTTTTTCCGT
ATGCTCGTCCTTATAAGGTGGCGGCATTATGGTTTGGGATGGTGGTTACGCAGGGAGCGG
CTTGTGTGTAGGTGTGCAGATCGTGTGTCGCGGTGGGTGTCTAGTTAGGCCGATTATTCA
GTATAGTTATTCACG

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)