cluster # 632

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 632 cluster # 632 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_632#0 length = 559 sequences # 1

consensus_632#1 length = 167 sequences # 1

consensusID : consensus_632#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 559
fasta sequence

                              [AGATGCGGCTTTGCCGCATAATGGACCAGCCAGTACGAAATACTCCATACGTTTCATATTGATCATCATTTAACACAAATTAAAATTTTTAAATTGATCATCATGTAATCATAGCCCTTCGTTCGACGTGTAATATTATTGCATTTAAGCATGAAAATTGAGTATGCATGCATGTATGTAGGAATTCGAGGCAGTAAAGCTATCGTTTCATAGAGCAAGTTTAATACCAGTATAACCAACTACTGACTCCAAATCATCTATAGTCAATTTAGTAGCCAATTCATATAATACTTACCTATAAACATTACTACACAATTCATACTTGGTTGCACCTGTCATACACACATGTATCTTGGAGTCTGGAGTCTGTGCTATAGCTGGCTATAAATCTGTAGCTCGCTGCTCTTCTCTCTTCTCTTTTATCTTCTCGAAATGTGTTTATAACTGGACCTGCTCTTATGTATGGGGCCTAAGAGGAGTTAAAGTGTGCATGTTTATTGATTTTTCCCTACCACATACTCACATTAAGTGAAATGCAGGAAAGTTAATATTTTTTTTT]

[+] EMBL CB096797             [AGATGCGGCTTTGCCGCATAATGGACCAGCCAGTACGAAATACTCCATACGTTTCATATTGATCATCATTTAACACAAATTAAAATTTTTAAATTGATCATCATGTAATCATAGCCCTTCGTTCGACGTGTAATATTATTGCATTTAAGCATGAAAATTGAGTATGCATGCATGTATGTAGGAATTCGAGGCAGTAAAGCTATCGTTTCATAGAGCAAGTTTAATACCAGTATAACCAACTACTGACTCCAAATCATCTATAGTCAATTTAGTAGCCAATTCATATAATACTTACCTATAAACATTACTACACAATTCATACTTGGTTGCACCTGTCATACACACATGTATCTTGGAGTCTGGAGTCTGTGCTATAGCTGGCTATAAATCTGTAGCTCGCTGCTCTTCTCTCTTCTCTTTTATCTTCTCGAAATGTGTTTATAACTGGACCTGCTCTTATGTATGGGGCCTAAGAGGAGTTAAAGTGTGCATGTTTATTGATTTTTCCCTACCACATACTCACATTAAGTGAAATGCAGGAAAGTTAATATTTTTTTTT]




>consensus_632#0
AGATGCGGCTTTGCCGCATAATGGACCAGCCAGTACGAAATACTCCATACGTTTCATATT
GATCATCATTTAACACAAATTAAAATTTTTAAATTGATCATCATGTAATCATAGCCCTTC
GTTCGACGTGTAATATTATTGCATTTAAGCATGAAAATTGAGTATGCATGCATGTATGTA
GGAATTCGAGGCAGTAAAGCTATCGTTTCATAGAGCAAGTTTAATACCAGTATAACCAAC
TACTGACTCCAAATCATCTATAGTCAATTTAGTAGCCAATTCATATAATACTTACCTATA
AACATTACTACACAATTCATACTTGGTTGCACCTGTCATACACACATGTATCTTGGAGTC
TGGAGTCTGTGCTATAGCTGGCTATAAATCTGTAGCTCGCTGCTCTTCTCTCTTCTCTTT
TATCTTCTCGAAATGTGTTTATAACTGGACCTGCTCTTATGTATGGGGCCTAAGAGGAGT
TAAAGTGTGCATGTTTATTGATTTTTCCCTACCACATACTCACATTAAGTGAAATGCAGG
AAAGTTAATATTTTTTTTT

consensusID : consensus_632#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 167
fasta sequence

                              [GGGATAATACTAGAAAGTTTGTGATAATCTGAAACGGAGGTAGTAGAAAATAGATGCGGCTTTGCCGCATAATGGACCAAGCCAGTACGAAATACTGCCGTACGTTTCATATTGATCATCATTTAACACNAAATTAAAATTTTTAAATTGATCATCCAAAAAAAAAA]

[+] EMBL BI805670             [GGGATAATACTAGAAAGTTTGTGATAATCTGAAACGGAGGTAGTAGAAAATAGATGCGGCTTTGCCGCATAATGGACCAAGCCAGTACGAAATACTGCCGTACGTTTCATATTGATCATCATTTAACACNAAATTAAAATTTTTAAATTGATCATCCAAAAAAAAAA]




>consensus_632#1
GGGATAATACTAGAAAGTTTGTGATAATCTGAAACGGAGGTAGTAGAAAATAGATGCGGC
TTTGCCGCATAATGGACCAAGCCAGTACGAAATACTGCCGTACGTTTCATATTGATCATC
ATTTAACACNAAATTAAAATTTTTAAATTGATCATCCAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_632#0      ---------------------------------------------------AGATGCGGC 9
consensus_632#1      GGGATAATACTAGAAAGTTTGTGATAATCTGAAACGGAGGTAGTAGAAAATAGATGCGGC 60
                                                                        *********

consensus_632#0      TTTGCCGCATAATGGACCA-GCCAGTACGAAATACT-CCATACGTTTCATATTGATCATC 67
consensus_632#1      TTTGCCGCATAATGGACCAAGCCAGTACGAAATACTGCCGTACGTTTCATATTGATCATC 120
                     ******************* **************** ** ********************

consensus_632#0      ATTTAACACAAA-TTAAAATTTTTAAATTGATCATCATGTAATCATAGCCCTTCGTTCGA 126
consensus_632#1      ATTTAACACNAAATTAAAATTTTTAAATTGATCATCCAAAAAAAAAA------------- 167
                     ********* ** ***********************    **  * *             

consensus_632#0      CGTGTAATATTATTGCATTTAAGCATGAAAATTGAGTATGCATGCATGTATGTAGGAATT 186
consensus_632#1      ------------------------------------------------------------
                                                                                 

consensus_632#0      CGAGGCAGTAAAGCTATCGTTTCATAGAGCAAGTTTAATACCAGTATAACCAACTACTGA 246
consensus_632#1      ------------------------------------------------------------
                                                                                 

consensus_632#0      CTCCAAATCATCTATAGTCAATTTAGTAGCCAATTCATATAATACTTACCTATAAACATT 306
consensus_632#1      ------------------------------------------------------------
                                                                                 

consensus_632#0      ACTACACAATTCATACTTGGTTGCACCTGTCATACACACATGTATCTTGGAGTCTGGAGT 366
consensus_632#1      ------------------------------------------------------------
                                                                                 

consensus_632#0      CTGTGCTATAGCTGGCTATAAATCTGTAGCTCGCTGCTCTTCTCTCTTCTCTTTTATCTT 426
consensus_632#1      ------------------------------------------------------------
                                                                                 

consensus_632#0      CTCGAAATGTGTTTATAACTGGACCTGCTCTTATGTATGGGGCCTAAGAGGAGTTAAAGT 486
consensus_632#1      ------------------------------------------------------------
                                                                                 

consensus_632#0      GTGCATGTTTATTGATTTTTCCCTACCACATACTCACATTAAGTGAAATGCAGGAAAGTT 546
consensus_632#1      ------------------------------------------------------------
                                                                                 

consensus_632#0      AATATTTTTTTTT 559
consensus_632#1      -------------