Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6323 cluster # 6323       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6323#0 length = 1175 sequences # 4  

consensusID : consensus_6323#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1175
fasta sequence
                              [ATTCCAAATCCGCCATCGCATCCTTCTCTCCATCCACCGAGGCGGCGCCACCACCTCTCGTCCGGCGGCGGCGCGGCGCGACGCTCCATCCCCGGCGAAAAGGCCGCCGGATTCCCTGTGGGGGCGGCGGAGAGGCGTCGGAGGAGGCTGGCGCCGGCGCGGCGACAAGCTTAATTAAGCAAATTGGATTCGGATCACAAAGGAGGCGGTGCCTGTAGAAAAGCCATGGCTTCTTCGGTGTTCAAGGCGATGGCAGAGAAGGCAGGGCCGTCTGTCCGAAAGCAGGCCCTTACGCTGACCGATGCAGCGGCGTCGAGGGTGCGCCAGCTGCTTGGCGTACGGCAGCGTGCTTATCTCCGTCTTGGCGTCAAGGCCCGTGGTTGCAATGGGTTGTCGTACACAATGAATTATGCTGATGAGAAGGGAAAATTCGATGAACTTGTGGAAGATAAAGGAGTTAAGATACTAATTGATCCGAAAGCTCTTATGCACGTGATTGGAACC-AAAATGGATTTCATTGATGATCCACTTAGGTCTGAGTTTGTGTTTATGAACCCTAATTCCAAGGGAGAATGTGGTTGCGGCGAATCATTTATGACATCAACCAAAAACAAAGGCCCGGCATAGTCCACCAAGTTTTGGCAGCGATTTGTTGATTATTTGATGTATAGAAGTATGTTGCTAATTTGCTATACACTTCAGTGACCCATTGTAGAGGAAAATTTCATTTCAGCTCCATTGAGCTGATTATCCTTCGTCACTCAGCATGGTTGGCACTTGTTACCTTTCACCTCTGGATTGGATCATCTGCAGCAAAGGAGGATACTGCCATTCCCCTCTAGCACGAAACATCCAATTGCAAGATGCCTCCTGATTGCATACTCTGGTGAGAACAATGGAGGTCAGCGTTCCAGCAACTCGCCTGAGGGATCATATAACAGGATTTTCGGCATTCCATCCACTCGCTAAGGGATCATATAACAGAGGTCTTGTTTACATCTTGTAAGATGGCATCCAAGGATAGATGTGGCATTGTTTTTTTTCCTCTTTTGCACCATGATCTGATAATCACCTTGCTGCATGTTCATACTGAGATTTTGATCTCTCATGTAACGGGATTTTATGCCATTTATGCTTTTCCTGGTTGGAAGTTGATGTTAAATTTAACAAAAAAA]

[+] EMBL AK071132             [ATTCCAAATCCGCCATCGCATCCTTCTCTCCATCCACCGAGGCGGCGCCACCACCTCTCGTCCGGCGGCGGCGCGGCGCGACGCTCCATCCCCGGCGAAAAGGCCGCCGGATTCCCTGTGGGGGCGGCGGAGAGGCGTCGGAGGAGGCTGGCGCCGGCGCGGCGACAAGCTTAATTAAGCAAATTGGATTCGGATCACAAAGGAGGCGGTGCCTGTAGAAAAGCCATGGCTTCTTCGGTGTTCAAGGCGATGGCAGAGAAGGCAGGGCCGTCTGTCCGAAAGCAGGCCCTTACGCTGACCGATGCAGCGGCGTCGAGGGTGCGCCAGCTGCTTGGCGTACGGCAGCGTGCTTATCTCCGTCTTGGCGTCAAGGCCCGTGGTTGCAATGGGTTGTCGTACACAATGAATTATGCTGATGAGAAGGGAAAATTCGATGAACTTGTGGAAGATAAAGGAGTTAAGATACTAATTGATCCGAAAGCTCTTATGCACGTGATTGGAACC AAAATGGATTTCATTGATGATCCACTTAGGTCTGAGTTTGTGTTTATGAACCCTAATTCCAAGGGAGAATGTGGTTGCGGCGAATCATTTATGACATCAACCAAAAACAAAGGCCCGGCATAGTCCACCAAGTTTTGGCAGCGATTTGTTGATTATTTGATGTATAGAAGTATGTTGCTAATTTGCTATACACTTCAGTGACCCATTGTAGAGGAAAATTTCATTTCAGCTCCATTGAGCTGATTATCCTTCGTCACTCAGCATGGTTGGCACTTGTTACCTTTCACCTCTGGATTGGATCATCTGCAGCAAAGGAGGATACTGCCATTCCCCTCTAGCACGAAACATCCAATTGCAAGATGCCTCCTGATTGCATACTCTGGTGAGAACAATGGAGGTCAGCGTTCCAGCAACTCGCCTGAGGGATCATATAACAGGATTTTCGGCATTCCATCCACTCGCTAAGGGATCATATAACAGAGGTCTTGTTTACATCTTGTAAGATGGCATCCAAGGATAGATGTGGCATTGTTTTTTTTCCTCTTTTGCACCATGATCTGATAATCACCTTGCTGCATGTTCATACTGAGATTTTGATCTCTCATGTAACGGGATTTTATGCCATTTATGCTTTTCCTGGTTGGAAGTTGATGTTAAATTTAAC       ]
[+] EMBL AK099510             [      AATCCGCCATCGCATCCTTCTCTCCATCCACCGAGGCGGCGCCACCACCTCTCGTCCGGCGGCGGCGCGGCGCGACGCTCCATCCCCGGCGAAAAGGCCGCCGGATTCCCTGTGGGGGCGGCGGAGAGGCGTCGGAGGAGGCTGGCGCCGGCGCGGCGACAAGCTTAATTAAGCAAATTGGATTCGGATCACAAAGGAGGCGGTGCCTGTAGAAAAGCCATGGCTTCTTCGGTGTTCAAGGCGATGGCAGAGAAGGCAGGGCCGTCTGTCCGAAAGCAGGCCCTTACGCTGACCGATGCAGCGGCGTCGAGGGTGCGCCAGCTGCTTGGCGTACGGCAGCGTGCTTATCTCCGTCTTGGCGTCAAGGCCCGTGGTTGCAATGGGTTGTCGTACACAATGAATTATGCTGATGAGAAGGGAAAATTCGATGAACTTGTGGAAGATAAAGGAGTTAAGATACTAATTGATCCGAAAGCTCTTATGCACGTGATTGGAACC AAAATGGATTTCATTGATGATCCACTTAGGTCTGAGTTTGTGTTTATGAACCCTAATTCCAAGGGAGAATGTGGTTGCGGCGAATCATTTATGACATCAACCAAAAACAAAGGCCCGGCATAGTCCACCAAGTTTTGGCAGCGATTTGTTGATTATTTGATGTATAGAAGTATGTTGCTAATTTGCTATACACTTCAGTGACCCATTGTAGAGGAAAATTTCATTTCAGCTCCATTGAGCTGATTATCCTTCGTCACTCAGCATGGTTGGCACTTGTTACCTTTCACCTCTGGATTGGATCATCTGCAGCAAAGGAGGATACTGCCATTCCCCTCTAGCACGAAACATCCAATTGCAAGATGCCTCCTGATTGCATACTCTGGTGAGAACAATGGAGGTCAGCGTTCCAGCAACTCGCCTGAGGGATCATATAACAGGATTTTCGGCATTCCATCCACTCGCTAAGGGATCATATAACAGAGGTCTTGTTTACATCTTGTAAGATGGCATCCAAGGATAGATGTGGCATTGTTTTTTTTCCTCTTTTGCACCATGATCTGATAATCACCTTGCTGCATGTTCATACTGAGATTTTGATCTCTCATGTAACGGGA                                                         ]
[+] EMBL D43114               [                                                                                                                                                                                                                                                                                            GGCCCTTACGCTGACCGATGCAGCGGCGTCGAGGGTGCGCCA CTGCTTGGCGTACGGCAGCGTGCTTATCTCCGTCTTGGCGTCAAGGCCCGTGGTTGCAATGGGTTGTCGTACACAATGAATTATGCTGATGAGAAGGGAAAATTCGATGAACTTGTGGAAGATAANGGAGTTAAGATACTAATTGATCCGAAAGCTCTTATGCACGTGATTGGAACC AAAATGGATTTCATTGATGATCCACTTAGGTCTGAGTTTGTGTTTATGAACCCTAATTCCAAGGGAGAATGTGGTTGCGGCGAATCATTTATGACATCAACCAAAAACAAAGGCCCGGCATAGTCCACCAAGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CA762980             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CACGTGATTGGAACCAAAAATGGATTTCATTGATGATCCACTTAGGTCTGAGTTTGTGTTTATGAACCCTAATTCCAAGGGAGAATGTGGTTGCGGCGAATCATTTATGACATCAACCAAAAACAAAGGCCCGGCATAGTCCACCAAGTTTTGGCAGCGATTTGTTGATTATNTGATGTATAGAAGTATGTTGCTAATNTGCTATACACTTCAGTGACCCATTGTAGAGGAAAATTTCATTTCAGCTCCATTGAGCTGATTATCCTTCGTCACTCAGCATGGTTGGCACTTGTTACCTTTCACCTCTGGATTGGATCATCTGCAGCAAAGGAGGATACTGCCATTCCCCTCTAGCACGAAACATCCAATTGCAAGATGCCTCCTGATTGCATACTCTGGTGAGAACAATGGAGGTCAGCGTTCCAGCAACTCGCCTGAGGGATCATATAACAGGATTTTCGGCATTCCATCCACTCGCTAAGGGATCATATAACAGAGGTCTTGTTTACATATTGTAAGATGGCATCCAAGGATAGATGTGGCATTGTTTTTTTTCCTCTTTTGCACCATGATCTGATAATCACCTTGCTGCATGTTCATACTGAGATTTTGATCTCTCATGTAACGGGATTTTATGCCATTTATGCTCTTCCTGGTTGGAAGTTGATGTTAAATTTAAAAAAAAAA]


>consensus_6323#0 ATTCCAAATCCGCCATCGCATCCTTCTCTCCATCCACCGAGGCGGCGCCACCACCTCTCG TCCGGCGGCGGCGCGGCGCGACGCTCCATCCCCGGCGAAAAGGCCGCCGGATTCCCTGTG GGGGCGGCGGAGAGGCGTCGGAGGAGGCTGGCGCCGGCGCGGCGACAAGCTTAATTAAGC AAATTGGATTCGGATCACAAAGGAGGCGGTGCCTGTAGAAAAGCCATGGCTTCTTCGGTG TTCAAGGCGATGGCAGAGAAGGCAGGGCCGTCTGTCCGAAAGCAGGCCCTTACGCTGACC GATGCAGCGGCGTCGAGGGTGCGCCAGCTGCTTGGCGTACGGCAGCGTGCTTATCTCCGT CTTGGCGTCAAGGCCCGTGGTTGCAATGGGTTGTCGTACACAATGAATTATGCTGATGAG AAGGGAAAATTCGATGAACTTGTGGAAGATAAAGGAGTTAAGATACTAATTGATCCGAAA GCTCTTATGCACGTGATTGGAACCAAAATGGATTTCATTGATGATCCACTTAGGTCTGAG TTTGTGTTTATGAACCCTAATTCCAAGGGAGAATGTGGTTGCGGCGAATCATTTATGACA TCAACCAAAAACAAAGGCCCGGCATAGTCCACCAAGTTTTGGCAGCGATTTGTTGATTAT TTGATGTATAGAAGTATGTTGCTAATTTGCTATACACTTCAGTGACCCATTGTAGAGGAA AATTTCATTTCAGCTCCATTGAGCTGATTATCCTTCGTCACTCAGCATGGTTGGCACTTG TTACCTTTCACCTCTGGATTGGATCATCTGCAGCAAAGGAGGATACTGCCATTCCCCTCT AGCACGAAACATCCAATTGCAAGATGCCTCCTGATTGCATACTCTGGTGAGAACAATGGA GGTCAGCGTTCCAGCAACTCGCCTGAGGGATCATATAACAGGATTTTCGGCATTCCATCC ACTCGCTAAGGGATCATATAACAGAGGTCTTGTTTACATCTTGTAAGATGGCATCCAAGG ATAGATGTGGCATTGTTTTTTTTCCTCTTTTGCACCATGATCTGATAATCACCTTGCTGC ATGTTCATACTGAGATTTTGATCTCTCATGTAACGGGATTTTATGCCATTTATGCTTTTC CTGGTTGGAAGTTGATGTTAAATTTAACAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)