cluster # 6332

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Oryza sativa
cluster # 6332 cluster # 6332 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6332#0 length = 700 sequences # 3

consensus_6332#1 length = 488 sequences # 1

consensusID : consensus_6332#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 700
fasta sequence

                              [NAATGTTGTCTCGAAGTGAGTGCCNTGGAAACATTGGAAAATACTTCTCCCTTCAAAAGAATTAGCCATCTTAAGAGATACACTTGTCAATGCAGAGAATCTTCACTATGTAACTGATGATGTTCAGAATCTAATGACAAAACTCAGTAACCTAGAAGCAAAACTAGAAGAGGCTGAAAGTGTGATAGTTAAACTGAGGGAGGACACCAGAACTACCATTAGGGAGCGGGATAAGCTAAAGCACGAAATGGTCGTCTTGACAAGGAAGGGCGCTTCACGGAGCCAGGCTGGTTTCCCTTTGCTGTTTGTGGTCTACATGGCGATCCTTGGCGCGTCACTCGGTTACCTGTTGCACCTATGATTCTGATTGATTGGTGCAGCTGGAGACGAAGTAACAGTATCACAGGGAGTACGTGCTGAGCTTTCTCACAGCAGCTGGAGTAGGAAAAGAAAAGAAATCAGAGGCAGGTAGCCTCCTCTTGGTACTGAATCAGGGATGAACTCTTGTCACGTGACGATCGTCACAACAATTAGTTCAGGCGTCCACTTACTAGGTGATTAACCAATTAAACGGAGTACATAAAACAGCATGATTTTTTATTTACGCTGTACATAACCTCTTTATATAAGTTTCCTGCCCGTGGACCGTGGTCGCTAGAGATAATCCAGGATGTTGTTCAGAGTTAAAAAAAAAAACACT]

[+] EMBL AU088670             [NAATGTTGTCTCGAAGTGAGTGCCNTGGAAACATTGGAAAATACTTCTCCCTTCAAAAGAATTAGCCATCTTAAGAGATACACTTGTCAATGCAGAGAATCTTCACTATGTAACTGATGATGTTCAGAATCTAATGACAAAACTCAGTAACCTAGAAGCAAAACTAGAAGAGGCTGAAAGTGTGATAGTTAAACTGAGGGAGGACACCAGAACTACCATTAGGGAGCGGGATAAGCTAAAGCACGAAATGGTCGTCTTGACAAGGAAGGGCGCTTCACGGAGCCAGGCTGGTTTCCCTTTGCTGTTTGTGGTCTACATGGCGATCCTTGGCGCGTCACTCGGTTACCTGTTGCACCTATGATTCTGATTGATTGGTGCAGCTGGAGACGAAGTAACAGTATCACAGGGAGTACGTGCTGAGCTTTCTCACAGCAGCTGGAGTAGGAAAAGAAAAGAAATCAGAGGCAGGTAGCCTCCTCTTGGTACTGAATCAGGGATGAACTCTTGTCACGTGACGATCGTCACAACAATTAGTTCAGGCGTCCACTTACTAGGTGATTAACCAATTAAACGGAGTACATAAAACAGCATGATTTTTTATTTACGCTGTACATAACCTCTTTATATAAGTTTCCTGCCCGTGGACCGTGGTCGCTAGAGATAATCCAGGATGTTGTTCAGAGTTAAAAAAAAAAA    ]
[-] EMBL CF307381             [                                                                                    TGTCAATGCAGAGAATCTTCACTATGTAACTGATGATGTTCAGAATCTAATGACAAAACTCAGTAACCTAGAAGCAAAACTAGAAGAGGCTGAAAGTGTGATAGTTAAACTGAGGGAGGACACCAGAACTACCATTAGGGAGCGGGATAAGCTAAAGCACGAAATGGTCGTCTTGACAAGGAAGGGCGCTTCACGGAGCCAGGCTGGTTTCCCTTTGCTGTTTGTGGTCTACATGGCGATCCTTGGCGCGTCACTCGGTTACCTGTTGCACCTATGATTCTGATTGATTGGTGCAGCTGGAGACGAAGTAACAGTATCACAGGGAGTACGTGCTGAGCTTTCTCACAGCAGCTGGAGTAGGAAAAGAAAAGAAATCAGAGGCAGGTAGCCTCCTCTTGGTACTGAATCAGGGATGAACTCTTGTCACGTGACGATCGTCACAACAATTAGTTCAGGCGTCCACTTACTAGGTGATTAACCAATTAAACGGAGTACATAAAACAGCATGATTTTTTATTTACGCTGTACATAACCTCTTTATATAAGTTTCCTGCCCGTGGACCGTGGTCGCTAGAGATAATCCAGGATGTTGTTCAGAGTTAAAAcctttgtcact]
[+] EMBL OSR03721A            [                                                                                                                                                                                                                  AACTACCATTAGGGAGCGGGATAAGCTAAAGCACGAAATGGTCGTCTTGACAAGGAAGGGCGCTTCACGGAGCCAGGCTGGTTTCCCTTTGCTGTTTGTGGTCTACATGGCGATCCTTGGCGCGTCACTCGGTTACCTGTTGCACCTATGATTCTGATTGATTGGTGCAGCTGGAGACGAAGTAACAGTATCACAGGGAGTACGTGCTGAGCTTTCTCACAGCAGCTGGAGTAGGAAAAGAAAAGAAATCAGAGGCAGGTAGCCTCCTCTTGGTACTGAATCAGGGATGAACTCTTGTCACGTGACGATCGTCACAACAATTAGTTCAGGCGTCCACTTACTAGGTGATTAACCAATTAAACGGAGTACATAAAACAGCATGATTTTTTATTTACGCTGTACATAACCTCTTTATATAAGTTTCCTGCCCGTG                                                         ]




>consensus_6332#0
NAATGTTGTCTCGAAGTGAGTGCCNTGGAAACATTGGAAAATACTTCTCCCTTCAAAAGA
ATTAGCCATCTTAAGAGATACACTTGTCAATGCAGAGAATCTTCACTATGTAACTGATGA
TGTTCAGAATCTAATGACAAAACTCAGTAACCTAGAAGCAAAACTAGAAGAGGCTGAAAG
TGTGATAGTTAAACTGAGGGAGGACACCAGAACTACCATTAGGGAGCGGGATAAGCTAAA
GCACGAAATGGTCGTCTTGACAAGGAAGGGCGCTTCACGGAGCCAGGCTGGTTTCCCTTT
GCTGTTTGTGGTCTACATGGCGATCCTTGGCGCGTCACTCGGTTACCTGTTGCACCTATG
ATTCTGATTGATTGGTGCAGCTGGAGACGAAGTAACAGTATCACAGGGAGTACGTGCTGA
GCTTTCTCACAGCAGCTGGAGTAGGAAAAGAAAAGAAATCAGAGGCAGGTAGCCTCCTCT
TGGTACTGAATCAGGGATGAACTCTTGTCACGTGACGATCGTCACAACAATTAGTTCAGG
CGTCCACTTACTAGGTGATTAACCAATTAAACGGAGTACATAAAACAGCATGATTTTTTA
TTTACGCTGTACATAACCTCTTTATATAAGTTTCCTGCCCGTGGACCGTGGTCGCTAGAG
ATAATCCAGGATGTTGTTCAGAGTTAAAAAAAAAAACACT

consensusID : consensus_6332#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 488
fasta sequence

                              [                                                                                                                                        AGGGACGGNATAAGCTAAAGCACGAAATGGTCGTCTTGACAAGGAAGGGCGCTTCACGGAGCCAGGCTGGTTTCCCTTTGCTGTTTGTGGTCTACATGGCGATCCTTGGCGCGTCACTCGGTTACCTGTTNCACCTATGATTCTGATTGATTGGTGCAGCTGGAGACGAAGTAACAGTATCACAGGGNGTACGTGCTGAGCTTTCTCACAGCAGCTGGNGTNGGAAAAGAAAAGAAATCAGAGGCAGGTAGCCTCCTCTTGGTACTGAATCAGGGATGAACTCTTGTCACGTGACGATCGTCACAACAATTAGTTCAGGCGTCCACTTACTAGGTGATTAACCAATTAAACGGNGTACATAAAACAGCATGATTTTTTATTTACGCTGTACATAACCTCTTTATATAAGTTTCCTGCCCGTGGACCGTGGTCGCTAGAGATAATCCAGGATGTTGTTCAGAGTTAAAACCTTTGTTNCTAAAAAANAA]

[+] EMBL AU164535             [                                                                                                                                        AGGGACGGNATAAGCTAAAGCACGAAATGGTCGTCTTGACAAGGAAGGGCGCTTCACGGAGCCAGGCTGGTTTCCCTTTGCTGTTTGTGGTCTACATGGCGATCCTTGGCGCGTCACTCGGTTACCTGTTNCACCTATGATTCTGATTGATTGGTGCAGCTGGAGACGAAGTAACAGTATCACAGGGNGTACGTGCTGAGCTTTCTCACAGCAGCTGGNGTNGGAAAAGAAAAGAAATCAGAGGCAGGTAGCCTCCTCTTGGTACTGAATCAGGGATGAACTCTTGTCACGTGACGATCGTCACAACAATTAGTTCAGGCGTCCACTTACTAGGTGATTAACCAATTAAACGGNGTACATAAAACAGCATGATTTTTTATTTACGCTGTACATAACCTCTTTATATAAGTTTCCTGCCCGTGGACCGTGGTCGCTAGAGATAATCCAGGATGTTGTTCAGAGTTAAAACCTTTGTTNCTAAAAAANAA]




>consensus_6332#1
AGGGACGGNATAAGCTAAAGCACGAAATGGTCGTCTTGACAAGGAAGGGCGCTTCACGGA
GCCAGGCTGGTTTCCCTTTGCTGTTTGTGGTCTACATGGCGATCCTTGGCGCGTCACTCG
GTTACCTGTTNCACCTATGATTCTGATTGATTGGTGCAGCTGGAGACGAAGTAACAGTAT
CACAGGGNGTACGTGCTGAGCTTTCTCACAGCAGCTGGNGTNGGAAAAGAAAAGAAATCA
GAGGCAGGTAGCCTCCTCTTGGTACTGAATCAGGGATGAACTCTTGTCACGTGACGATCG
TCACAACAATTAGTTCAGGCGTCCACTTACTAGGTGATTAACCAATTAAACGGNGTACAT
AAAACAGCATGATTTTTTATTTACGCTGTACATAACCTCTTTATATAAGTTTCCTGCCCG
TGGACCGTGGTCGCTAGAGATAATCCAGGATGTTGTTCAGAGTTAAAACCTTTGTTNCTA
AAAAANAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6332#0      NAATGTTGTCTCGAAGTGAGTGCCNTGGAAACATTGGAAAATACTTCTCCCTTCAAAAGA 60
consensus_6332#1      ------------------------------------------------------------
                                                                                  

consensus_6332#0      ATTAGCCATCTTAAGAGATACACTTGTCAATGCAGAGAATCTTCACTATGTAACTGATGA 120
consensus_6332#1      ------------------------------------------------------------
                                                                                  

consensus_6332#0      TGTTCAGAATCTAATGACAAAACTCAGTAACCTAGAAGCAAAACTAGAAGAGGCTGAAAG 180
consensus_6332#1      ------------------------------------------------------------
                                                                                  

consensus_6332#0      TGTGATAGTTAAACTGAGGGAGGACACCAGAACTACCATTAGGGAGCGGGATAAGCTAAA 240
consensus_6332#1      -----------------------------------------AGGGACGGNATAAGCTAAA 19
                                                                **  *** **********

consensus_6332#0      GCACGAAATGGTCGTCTTGACAAGGAAGGGCGCTTCACGGAGCCAGGCTGGTTTCCCTTT 300
consensus_6332#1      GCACGAAATGGTCGTCTTGACAAGGAAGGGCGCTTCACGGAGCCAGGCTGGTTTCCCTTT 79
                      ************************************************************

consensus_6332#0      GCTGTTTGTGGTCTACATGGCGATCCTTGGCGCGTCACTCGGTTACCTGTTGCACCTATG 360
consensus_6332#1      GCTGTTTGTGGTCTACATGGCGATCCTTGGCGCGTCACTCGGTTACCTGTTNCACCTATG 139
                      *************************************************** ********

consensus_6332#0      ATTCTGATTGATTGGTGCAGCTGGAGACGAAGTAACAGTATCACAGGGAGTACGTGCTGA 420
consensus_6332#1      ATTCTGATTGATTGGTGCAGCTGGAGACGAAGTAACAGTATCACAGGGNGTACGTGCTGA 199
                      ************************************************ ***********

consensus_6332#0      GCTTTCTCACAGCAGCTGGAGTAGGAAAAGAAAAGAAATCAGAGGCAGGTAGCCTCCTCT 480
consensus_6332#1      GCTTTCTCACAGCAGCTGGNGTNGGAAAAGAAAAGAAATCAGAGGCAGGTAGCCTCCTCT 259
                      ******************* ** *************************************

consensus_6332#0      TGGTACTGAATCAGGGATGAACTCTTGTCACGTGACGATCGTCACAACAATTAGTTCAGG 540
consensus_6332#1      TGGTACTGAATCAGGGATGAACTCTTGTCACGTGACGATCGTCACAACAATTAGTTCAGG 319
                      ************************************************************

consensus_6332#0      CGTCCACTTACTAGGTGATTAACCAATTAAACGGAGTACATAAAACAGCATGATTTTTTA 600
consensus_6332#1      CGTCCACTTACTAGGTGATTAACCAATTAAACGGNGTACATAAAACAGCATGATTTTTTA 379
                      ********************************** *************************

consensus_6332#0      TTTACGCTGTACATAACCTCTTTATATAAGTTTCCTGCCCGTGGACCGTGGTCGCTAGAG 660
consensus_6332#1      TTTACGCTGTACATAACCTCTTTATATAAGTTTCCTGCCCGTGGACCGTGGTCGCTAGAG 439
                      ************************************************************

consensus_6332#0      ATAATCCAGGATGTTGTTCAGAGTTAAAAAAAAAAACACT--------- 700
consensus_6332#1      ATAATCCAGGATGTTGTTCAGAGTTAAAACCTTTGTTNCTAAAAAANAA 488
                      *****************************         **