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Oryza sativa
cluster # 6340 cluster # 6340       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6340#0 length = 3311 sequences # 3  
consensus_6340#1 length = 520 sequences # 1  

consensusID : consensus_6340#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 3311
fasta sequence
                              [TCCTCTCCTCGCCTCCAATGGCGCTGCTCTTCCCACCACCACCCCACGCGCTCTCCCCCAAACCCCCCTTCCCCTCCACTCTCCGCTCCACGAGGTCACTGCGTCTCCGCCGCGCCACCGCCGCCGCCGCCGCCGCCGGGGCCGGAGTCTCCTCCTCTTCCCCCTCGACCTCCTCGCCGGAGAAGGCCCCGGCGCTGGACGTCGCCAGCGGGAAGAGGGGTGGTAAGAAGAGGAGGTCCCTGAAGCCGAGCTTCGAGAAGCAGGCCATCCGCCGCTGGTCCGCGAGGGCGCCGTCCCAGCGCGCCTCCTTCCCCTGGCAGCAGCAGCAGCAGCAGCAGCAGCCGGGCGGAGGTGAGGGTGAGGCCGCGGGCGATCAGGAATCCGGTTGGAGTGGGAGCTCCACGCTGCAGTCCATCGTGGATTACTTCGACTTCGACTACGATTCCTCGGATGGTGATGGCGATGGCGATGGCGATGGCGTCGTGGTCGGCGGCGAAGCGGCCGAGGCCCAGGAGGATGGGCCGCGTCCCGAGCCGAGCTTCCTTCTCGGGAGCCGGCCGGTGTCAGCGCCGTGGATGCACGGGGAAGAAGAGCCCATGACGAACCAATTGGTTTCTGACGAGGAAGGGTTGGATGGGGATGGTGCTTCCGAGGATGAGATGGGTTTAGTTGATGGAGACGGAGACGAAGACGAAGATTTGGGGAGTGAGGAGGAGACGCTAAGTGAGAGCTCAGACGGGGAATTCTCCGAGGATTATGCAGCACCGGCCGCAAATTCTTCTTCTATGATGGATTCGGTACTGGACCATGTTTCTTCAGGTGGTGGGTTTTATAGAGGTACTAGGCGGAGTAGCGTAAATTCAATTGTTAACACAATGAGGAATTCGATGGAGGAAAGTAGTAGAAATGCTGCGATTGAGTGTCCCGAGACCGAGGATTTTGTCCAGAAGCTCGGTCCTGTGCTCCTCCCATGGGAGAGGGAGGGGGATGTCGATAGGCCGAGAAAGCGCAGCAACACGGAGCTGGCTGAGAGGACTATCCCAGAGCACGAGCTGCGGAGGCTTAGAGATGTGGCATTGAGGATGAAGGAGAGGATGAGGGTTGGTCCAGGAGGGGTCACTCAGCTCATTGTGGAGAGCATTCATCAGAAATGGAGGGTGGAAGAGGTGGTCAAGCTGAGATTTGAAGGACCTCCAAGCCTGAACATGAAGAGAACTCATGATATACTAGAGGAGAGGACTGGAGGAGTTGTAATATGGAGGTCAGGGAGATCAGTTGTTTTATATAGGGGAATGAACTACAACCTTCGATGTGTGCAGTCGTATACACAAACTACAGAGGTTAATTTTGATAAAAGAGTTAGTAGTAATAGTGTTGAACCTATCCATGTTGAACATAAATTTCAGAAGTCAGGTGCAGATGGACTGAATCGCTCAGCATATATTGTCAATTCCTCTGAAAAACCTACAGAGACATTTGATATCGATAGCTTCTTGGATCAGTTGGGACCGCGGTATAAAGATTGGTCTGGTCGTGGCCCTATTCCTGTGGATGCTGACTTGCTTCCTGGTGTTGTTCCTGGTTACAAGACACCATTTAGACTACTTCCTTACATGGTTAAAAGTACCCTTCGGAATAAGGAAATGACGGCTCTGCGTAGACTTGCAAGGCAAACTGCTCCTCATTTTGCTCTAGGGAGAAACAGGGAACACCAAGGATTAGCTACTGCTATCGTTAAATTGTGGGAGAAAAGTTCTATTGCAAAGATTGCCATCAAGAGGGGGGTTCCAAATACATGCAATGACAGAATGGCAGAAGAAATCAGGAAATTAACAGGAGGAGTGCTTCTATCGAGGAACAAGGAGTACATTGTCTTCTACAGGGGCAATGATTTCATAACACCTAAAGTAAGGCAAGTCTTGGTGGAGAAGCAAGAGCAAGCAATCACTTGGCAGGATGAGGAAGAATTGGCTCGGCTTAAAGCATCAGCCTCGATCAGTGTCAGACCCAAAGTATTTAAAAATCCCCCAGTTGCTGGCACTCTCGCGGAAACTAGAGAGGCAAAATCTCGATGGGGAGATTCCATTAATGCTGAGCTCAGGAAAAAGGAGAAGAATCACATGATTCTTACAAAACATACCTCTCTTTTGAGGAACTTGAAGAGAAAATTGATTTTGGCAAAAACAAAGGTCATAAAAGCAGAAAAGGCCTTGGCTAAAGTTCAAGAATTTCTCTCTCCAGCAGAGCTTCCAACTGATTTGGAAACTGTTACAGATGAGGAACGCTTCTTACTTCGCAGAATTGGCCTGAAAATGAAGGCCTTTCTAATGCTTGGAAGACGAGAAGTTTTTGATGGAACAGTACAGAACATGCACTTGCATTGGAAGCATCGAGAATTAGTCAAGGTTCTTGTAAAGGGGAAGAGCTTTCCACAAGTAAAACATATTGCAATATCTCTGGAAGCTGAAAGTGGAGGAGTGCTCATTTCAGTTGATAAGACGACAAAAGGATATGCAATCATTTTGTACCGGGGTAAGAACTACAAGACGCCCCAAATTTTGAAG-CTCGAAACCTATTGTCAAGGAGAAAAGCATTGGCACGGTCTATAGAGCTCCAAAGGCGGGAGGGATTAAATCATCATATCTCAAATCTGCGAGACAAGATCTGGAAGCTGAAGTCTCAACTTGTACGAATGCAAGTTGCTGGGGAAAAACCAGATGCGGAGTTACTTCAAACAGTTGAGGCTGATTTGTCTAAAGATGACGATAAAATAGAGGATGAAGGAGAGGAGGCCTACCTGCAAACTTACATCAGTGAGGATGAAGAGGAACCTGAGGATGATCAGAATGAATATCTCTGAATCTTAACTGGCGAAACTTCGGTGAGTCCGGGAGAAAAGTCAGTAGTAAAGCATTGCATGTTCATATTGTGAAATTTCTGCAGTGTTACTCAAGAGGCAGGCAGTTTTAAGATTCATCTATGGATTATTGCCAACACAAATTGACCTGCAACAGCATTAGTGGCCTTTGTCCATTGCGAGATCAACGACAAAGGATGTAGCTTGAGTGTGTGTGGATTGTGGTGCATGGTCTGCAGTTGCTGCCATTCCTTTTTTTTTTTTTTTTTACCTTGGCTACTTCCATAGCTCCATCCATGCCTGATGCCCTGATGGCCTTCTACATCCTGCAGATTTGAAAAGGTTTCTGTCAACACACGATCAAGTTGTCTGCTGTGCAGAAGTTTGCAAAGTGGCAGTGTATAAATCAGGCTCGTGTGAGTTCGTTTCATTTTGCAGAAGCTGTAATTATATC]

[+] EMBL AK065958             [TCCTCTCCTCGCCTCCAATGGCGCTGCTCTTCCCACCACCACCCCACGCGCTCTCCCCCAAACCCCCCTTCCCCTCCACTCTCCGCTCCACGAGGTCACTGCGTCTCCGCCGCGCCACCGCCGCCGCCGCCGCCGCCGGGGCCGGAGTCTCCTCCTCTTCCCCCTCGACCTCCTCGCCGGAGAAGGCCCCGGCGCTGGACGTCGCCAGCGGGAAGAGGGGTGGTAAGAAGAGGAGGTCCCTGAAGCCGAGCTTCGAGAAGCAGGCCATCCGCCGCTGGTCCGCGAGGGCGCCGTCCCAGCGCGCCTCCTTCCCCTGGCAGCAGCAGCAGCAGCAGCAGCAGCCGGGCGGAGGTGAGGGTGAGGCCGCGGGCGATCAGGAATCCGGTTGGAGTGGGAGCTCCACGCTGCAGTCCATCGTGGATTACTTCGACTTCGACTACGATTCCTCGGATGGTGATGGCGATGGCGATGGCGATGGCGTCGTGGTCGGCGGCGAAGCGGCCGAGGCCCAGGAGGATGGGCCGCGTCCCGAGCCGAGCTTCCTTCTCGGGAGCCGGCCGGTGTCAGCGCCGTGGATGCACGGGGAAGAAGAGCCCATGACGAACCAATTGGTTTCTGACGAGGAAGGGTTGGATGGGGATGGTGCTTCCGAGGATGAGATGGGTTTAGTTGATGGAGACGGAGACGAAGACGAAGATTTGGGGAGTGAGGAGGAGACGCTAAGTGAGAGCTCAGACGGGGAATTCTCCGAGGATTATGCAGCACCGGCCGCAAATTCTTCTTCTATGATGGATTCGGTACTGGACCATGTTTCTTCAGGTGGTGGGTTTTATAGAGGTACTAGGCGGAGTAGCGTAAATTCAATTGTTAACACAATGAGGAATTCGATGGAGGAAAGTAGTAGAAATGCTGCGATTGAGTGTCCCGAGACCGAGGATTTTGTCCAGAAGCTCGGTCCTGTGCTCCTCCCATGGGAGAGGGAGGGGGATGTCGATAGGCCGAGAAAGCGCAGCAACACGGAGCTGGCTGAGAGGACTATCCCAGAGCACGAGCTGCGGAGGCTTAGAGATGTGGCATTGAGGATGAAGGAGAGGATGAGGGTTGGTCCAGGAGGGGTCACTCAGCTCATTGTGGAGAGCATTCATCAGAAATGGAGGGTGGAAGAGGTGGTCAAGCTGAGATTTGAAGGACCTCCAAGCCTGAACATGAAGAGAACTCATGATATACTAGAGGAGAGGACTGGAGGAGTTGTAATATGGAGGTCAGGGAGATCAGTTGTTTTATATAGGGGAATGAACTACAACCTTCGATGTGTGCAGTCGTATACACAAACTACAGAGGTTAATTTTGATAAAAGAGTTAGTAGTAATAGTGTTGAACCTATCCATGTTGAACATAAATTTCAGAAGTCAGGTGCAGATGGACTGAATCGCTCAGCATATATTGTCAATTCCTCTGAAAAACCTACAGAGACATTTGATATCGATAGCTTCTTGGATCAGTTGGGACCGCGGTATAAAGATTGGTCTGGTCGTGGCCCTATTCCTGTGGATGCTGACTTGCTTCCTGGTGTTGTTCCTGGTTACAAGACACCATTTAGACTACTTCCTTACATGGTTAAAAGTACCCTTCGGAATAAGGAAATGACGGCTCTGCGTAGACTTGCAAGGCAAACTGCTCCTCATTTTGCTCTAGGGAGAAACAGGGAACACCAAGGATTAGCTACTGCTATCGTTAAATTGTGGGAGAAAAGTTCTATTGCAAAGATTGCCATCAAGAGGGGGGTTCCAAATACATGCAATGACAGAATGGCAGAAGAAATCAGGAAATTAACAGGAGGAGTGCTTCTATCGAGGAACAAGGAGTACATTGTCTTCTACAGGGGCAATGATTTCATAACACCTAAAGTAAGGCAAGTCTTGGTGGAGAAGCAAGAGCAAGCAATCACTTGGCAGGATGAGGAAGAATTGGCTCGGCTTAAAGCATCAGCCTCGATCAGTGTCAGACCCAAAGTATTTAAAAATCCCCCAGTTGCTGGCACTCTCGCGGAAACTAGAGAGGCAAAATCTCGATGGGGAGATTCCATTAATGCTGAGCTCAGGAAAAAGGAGAAGAATCACATGATTCTTACAAAACATACCTCTCTTTTGAGGAACTTGAAGAGAAAATTGATTTTGGCAAAAACAAAGGTCATAAAAGCAGAAAAGGCCTTGGCTAAAGTTCAAGAATTTCTCTCTCCAGCAGAGCTTCCAACTGATTTGGAAACTGTTACAGATGAGGAACGCTTCTTACTTCGCAGAATTGGCCTGAAAATGAAGGCCTTTCTAATGCTTGGAAGACGAGAAGTTTTTGATGGAACAGTACAGAACATGCACTTGCATTGGAAGCATCGAGAATTAGTCAAGGTTCTTGTAAAGGGGAAGAGCTTTCCACAAGTAAAACATATTGCAATATCTCTGGAAGCTGAAAGTGGAGGAGTGCTCATTTCAGTTGATAAGACGACAAAAGGATATGCAATCATTTTGTACCGGGGTAAGAACTACAAGACGCCCCAAATTTTGAAG CTCGAAACCTATTGTCAAGGAGAAAAGCATTGGCACGGTCTATAGAGCTCCAAAGGCGGGAGGGATTAAATCATCATATCTCAAATCTGCGAGACAAGATCTGGAAGCTGAAGTCTCAACTTGTACGAATGCAAGTTGCTGGGGAAAAACCAGATGCGGAGTTACTTCAAACAGTTGAGGCTGATTTGTCTAAAGATGACGATAAAATAGAGGATGAAGGAGAGGAGGCCTACCTGCAAACTTACATCAGTGAGGATGAAGAGGAACCTGAGGATGATCAGAATGAATATCTCTGAATCTTAACTGGCGAAACTTCGGTGAGTCCGGGAGAAAAGTCAGTAGTAAAGCATTGCATGTTCATATTGTGAAATTTCTGCAGTGTTACTCAAGAGGCAGGCAGTTTTAAGATTCATCTATGGATTATTGCCAACACAAATTGACCTGCAACAGCATTAGTGGCCTTTGTCCATTGCGAGATCAACGACAAAGGATGTAGCTTGAGTGTGTGTGGATTGTGGTGCATGGTCTGCAGTTGCTGCCATTCCTTTTTTTTTTTTTTTTTACCTTGGCTACTTCCATAGCTCCATCCATGCCTGATGCCCTGATGGCCTTCTACATCCTGCAGATTTGAAAAGGTTTCTGTCAACACACGATCAAGTTGTCTGCTGTGCAGAAGTTTGCAAAGTGGCAGTGTATAAATCAGGCTCGTGTGAGTTCGTTTCATTTTGCAGAAGCTGTAATTATATC]
[+] EMBL CF310347             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CTTCGCAGAATTGGCCTGAAAATGAAGGCCTTTCTAATGCTTGGAAGACGAGAAGTTTTTGATGGAACAGTACAGAACATGCACTTGCATTGGAAGCATCGAGAATTAGTCAAGGTTCTTGTAAAGGGGAAGAGCTTTCCACAAGTAAAACATATTGCAATATCTCTGGAAGCTGAAAGTGGAGGAGTGCTCATTTCAGTTGATAAGACGACAAAAGGATATGCAATCATTTTGTACCGGGGTAAGAACTACAAGACGCCCCAAATTTTGAAGCCTCGAAACCTATTGTCAAGGAGAAAAGCATTGGCACGGTCTATAGAGCTCCAAAGGCGGGAGGGATTAAATCATCATATCTCAAATCTGCGAGACAAGATCTGGAAGCTGAAGTCTCAACTTGTACGAATGCAAGTTGCTGGGGAAAAACCAGATGCGGAGTTACTTCAAACAGTTGAGGCTGATTTGTCTAAAGATGACGATAAAATAGAGGATGAAGGAGAGGAGGCCTACCTGCAAACTTACATCAGTGAGGATGAAGAGGAACCTGANGATGATCAGAATGAATATCTCTGAATCTTAACTGGCGAAACTTCGGTGAGTCCGGGAGAAAAGTCAGTAGTAAAGCATTG                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CA766460             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       cGAGACAAG GGGGGCACGGTCTATAGAGCTCCAAAGGCGGGAGGGATTAAATCATCATATCTCAAATCTGCGAGACAAGATCTGGAAGCTGAAGTCTCAACTTGTACGAATGCAGGTTGCTGGGGAAAAACCAGATGCGGAGTTACTTCAAACAGTTGAGGCTGATTTGTCTAAAGATGACGATAAAATAGAGGATGAAGGAGAGGAGGCCTACCTGCAAACTTACATCAGTGAGGATGAAGAGGAACCTGAGGATGATCAGAATGAATATCTCTGAATCTTAACTGGCGAAACTTCGGTGAGTCCGGGAGAAAAGTCAGTAGTAAAGCATTGCATGTTCATATTGTGAAATTTCTGCAGTGTTACTCAAGAGGCAGGCAGTTTTAAGATTCATCTATGGATTATTGCCAACACAAATTGACCTGCAACAGCATTAGTGGCCTTTGTCCATTGCGAGATCAACGACAAAGGATGTAGCTTGAGTGTGTGTGGATTGTGGTGCATGGTCTGCAGTTGCTGCCATTCC    TTTTTTTTTTTTTACCTTGGCTACTTCCATAGCTCCATCCATGCCTGATGCCCTGATGGCCTTCTACATCCTGCAGATTTGAAAAGGNTTCTGTCAACACACGATCAAGTTGTCTGCTGTGCAGAAGTTTGCAAAGNGGCAGTGTATAAATCAAGCTCGNGTGAGTTCGTTTCA                        ]


>consensus_6340#0 TCCTCTCCTCGCCTCCAATGGCGCTGCTCTTCCCACCACCACCCCACGCGCTCTCCCCCA AACCCCCCTTCCCCTCCACTCTCCGCTCCACGAGGTCACTGCGTCTCCGCCGCGCCACCG CCGCCGCCGCCGCCGCCGGGGCCGGAGTCTCCTCCTCTTCCCCCTCGACCTCCTCGCCGG AGAAGGCCCCGGCGCTGGACGTCGCCAGCGGGAAGAGGGGTGGTAAGAAGAGGAGGTCCC TGAAGCCGAGCTTCGAGAAGCAGGCCATCCGCCGCTGGTCCGCGAGGGCGCCGTCCCAGC GCGCCTCCTTCCCCTGGCAGCAGCAGCAGCAGCAGCAGCAGCCGGGCGGAGGTGAGGGTG AGGCCGCGGGCGATCAGGAATCCGGTTGGAGTGGGAGCTCCACGCTGCAGTCCATCGTGG ATTACTTCGACTTCGACTACGATTCCTCGGATGGTGATGGCGATGGCGATGGCGATGGCG TCGTGGTCGGCGGCGAAGCGGCCGAGGCCCAGGAGGATGGGCCGCGTCCCGAGCCGAGCT TCCTTCTCGGGAGCCGGCCGGTGTCAGCGCCGTGGATGCACGGGGAAGAAGAGCCCATGA CGAACCAATTGGTTTCTGACGAGGAAGGGTTGGATGGGGATGGTGCTTCCGAGGATGAGA TGGGTTTAGTTGATGGAGACGGAGACGAAGACGAAGATTTGGGGAGTGAGGAGGAGACGC TAAGTGAGAGCTCAGACGGGGAATTCTCCGAGGATTATGCAGCACCGGCCGCAAATTCTT CTTCTATGATGGATTCGGTACTGGACCATGTTTCTTCAGGTGGTGGGTTTTATAGAGGTA CTAGGCGGAGTAGCGTAAATTCAATTGTTAACACAATGAGGAATTCGATGGAGGAAAGTA GTAGAAATGCTGCGATTGAGTGTCCCGAGACCGAGGATTTTGTCCAGAAGCTCGGTCCTG TGCTCCTCCCATGGGAGAGGGAGGGGGATGTCGATAGGCCGAGAAAGCGCAGCAACACGG AGCTGGCTGAGAGGACTATCCCAGAGCACGAGCTGCGGAGGCTTAGAGATGTGGCATTGA GGATGAAGGAGAGGATGAGGGTTGGTCCAGGAGGGGTCACTCAGCTCATTGTGGAGAGCA TTCATCAGAAATGGAGGGTGGAAGAGGTGGTCAAGCTGAGATTTGAAGGACCTCCAAGCC TGAACATGAAGAGAACTCATGATATACTAGAGGAGAGGACTGGAGGAGTTGTAATATGGA GGTCAGGGAGATCAGTTGTTTTATATAGGGGAATGAACTACAACCTTCGATGTGTGCAGT CGTATACACAAACTACAGAGGTTAATTTTGATAAAAGAGTTAGTAGTAATAGTGTTGAAC CTATCCATGTTGAACATAAATTTCAGAAGTCAGGTGCAGATGGACTGAATCGCTCAGCAT ATATTGTCAATTCCTCTGAAAAACCTACAGAGACATTTGATATCGATAGCTTCTTGGATC AGTTGGGACCGCGGTATAAAGATTGGTCTGGTCGTGGCCCTATTCCTGTGGATGCTGACT TGCTTCCTGGTGTTGTTCCTGGTTACAAGACACCATTTAGACTACTTCCTTACATGGTTA AAAGTACCCTTCGGAATAAGGAAATGACGGCTCTGCGTAGACTTGCAAGGCAAACTGCTC CTCATTTTGCTCTAGGGAGAAACAGGGAACACCAAGGATTAGCTACTGCTATCGTTAAAT TGTGGGAGAAAAGTTCTATTGCAAAGATTGCCATCAAGAGGGGGGTTCCAAATACATGCA ATGACAGAATGGCAGAAGAAATCAGGAAATTAACAGGAGGAGTGCTTCTATCGAGGAACA AGGAGTACATTGTCTTCTACAGGGGCAATGATTTCATAACACCTAAAGTAAGGCAAGTCT TGGTGGAGAAGCAAGAGCAAGCAATCACTTGGCAGGATGAGGAAGAATTGGCTCGGCTTA AAGCATCAGCCTCGATCAGTGTCAGACCCAAAGTATTTAAAAATCCCCCAGTTGCTGGCA CTCTCGCGGAAACTAGAGAGGCAAAATCTCGATGGGGAGATTCCATTAATGCTGAGCTCA GGAAAAAGGAGAAGAATCACATGATTCTTACAAAACATACCTCTCTTTTGAGGAACTTGA AGAGAAAATTGATTTTGGCAAAAACAAAGGTCATAAAAGCAGAAAAGGCCTTGGCTAAAG TTCAAGAATTTCTCTCTCCAGCAGAGCTTCCAACTGATTTGGAAACTGTTACAGATGAGG AACGCTTCTTACTTCGCAGAATTGGCCTGAAAATGAAGGCCTTTCTAATGCTTGGAAGAC GAGAAGTTTTTGATGGAACAGTACAGAACATGCACTTGCATTGGAAGCATCGAGAATTAG TCAAGGTTCTTGTAAAGGGGAAGAGCTTTCCACAAGTAAAACATATTGCAATATCTCTGG AAGCTGAAAGTGGAGGAGTGCTCATTTCAGTTGATAAGACGACAAAAGGATATGCAATCA TTTTGTACCGGGGTAAGAACTACAAGACGCCCCAAATTTTGAAGCTCGAAACCTATTGTC AAGGAGAAAAGCATTGGCACGGTCTATAGAGCTCCAAAGGCGGGAGGGATTAAATCATCA TATCTCAAATCTGCGAGACAAGATCTGGAAGCTGAAGTCTCAACTTGTACGAATGCAAGT TGCTGGGGAAAAACCAGATGCGGAGTTACTTCAAACAGTTGAGGCTGATTTGTCTAAAGA TGACGATAAAATAGAGGATGAAGGAGAGGAGGCCTACCTGCAAACTTACATCAGTGAGGA TGAAGAGGAACCTGAGGATGATCAGAATGAATATCTCTGAATCTTAACTGGCGAAACTTC GGTGAGTCCGGGAGAAAAGTCAGTAGTAAAGCATTGCATGTTCATATTGTGAAATTTCTG CAGTGTTACTCAAGAGGCAGGCAGTTTTAAGATTCATCTATGGATTATTGCCAACACAAA TTGACCTGCAACAGCATTAGTGGCCTTTGTCCATTGCGAGATCAACGACAAAGGATGTAG CTTGAGTGTGTGTGGATTGTGGTGCATGGTCTGCAGTTGCTGCCATTCCTTTTTTTTTTT TTTTTTACCTTGGCTACTTCCATAGCTCCATCCATGCCTGATGCCCTGATGGCCTTCTAC ATCCTGCAGATTTGAAAAGGTTTCTGTCAACACACGATCAAGTTGTCTGCTGTGCAGAAG TTTGCAAAGTGGCAGTGTATAAATCAGGCTCGTGTGAGTTCGTTTCATTTTGCAGAAGCT GTAATTATATC



consensusID : consensus_6340#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 520
fasta sequence
                              [GGAGGCCTACCTGCAAACTTACATCAGTGAGGATGAAGAGGAACCTGAGGATGATCAGAATGAATATCTCTGAATCTTAACTGGCGAAACTTCGGTGAGTCCGGGAGAAAAGTCAGTAGTAAAGCATTGCATGTTCATATTGTGAAATTTCTGCAGTGTTACTCAAGAGGCAGGCAGTTTTAAGATTCATCTATGGATTATTGCCAACACAAATTGACCTGCAACAGCATTAGTGGCCTTTGTCCATTGCGAGATCAACGACAAAGGATGTAGCTTGAGTGTGTGTGGATTGTGGTGCATGGTCTGCAGTTGCTGCCATTCCTTTTTTTTTTTTTTTTTTTACCTTGGCTACTTCCATAGCTCCATCCATGCCTGATGCCCTGATGGCCTTTTACATCCTGCAGATTTGAAAAGGTTTCTGTCAACACACGATCAAGTTGTTTGCTGTGCAGAAGTTTGCAAAGTGGCAGTGTATAAATCAGGCTCGTGTGAGTTCGTTTCAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF310348             [GGAGGCCTACCTGCAAACTTACATCAGTGAGGATGAAGAGGAACCTGAGGATGATCAGAATGAATATCTCTGAATCTTAACTGGCGAAACTTCGGTGAGTCCGGGAGAAAAGTCAGTAGTAAAGCATTGCATGTTCATATTGTGAAATTTCTGCAGTGTTACTCAAGAGGCAGGCAGTTTTAAGATTCATCTATGGATTATTGCCAACACAAATTGACCTGCAACAGCATTAGTGGCCTTTGTCCATTGCGAGATCAACGACAAAGGATGTAGCTTGAGTGTGTGTGGATTGTGGTGCATGGTCTGCAGTTGCTGCCATTCCTTTTTTTTTTTTTTTTTTTACCTTGGCTACTTCCATAGCTCCATCCATGCCTGATGCCCTGATGGCCTTTTACATCCTGCAGATTTGAAAAGGTTTCTGTCAACACACGATCAAGTTGTTTGCTGTGCAGAAGTTTGCAAAGTGGCAGTGTATAAATCAGGCTCGTGTGAGTTCGTTTCAAAAAAAAAAAAAAAAAAA]


>consensus_6340#1 GGAGGCCTACCTGCAAACTTACATCAGTGAGGATGAAGAGGAACCTGAGGATGATCAGAA TGAATATCTCTGAATCTTAACTGGCGAAACTTCGGTGAGTCCGGGAGAAAAGTCAGTAGT AAAGCATTGCATGTTCATATTGTGAAATTTCTGCAGTGTTACTCAAGAGGCAGGCAGTTT TAAGATTCATCTATGGATTATTGCCAACACAAATTGACCTGCAACAGCATTAGTGGCCTT TGTCCATTGCGAGATCAACGACAAAGGATGTAGCTTGAGTGTGTGTGGATTGTGGTGCAT GGTCTGCAGTTGCTGCCATTCCTTTTTTTTTTTTTTTTTTTACCTTGGCTACTTCCATAG CTCCATCCATGCCTGATGCCCTGATGGCCTTTTACATCCTGCAGATTTGAAAAGGTTTCT GTCAACACACGATCAAGTTGTTTGCTGTGCAGAAGTTTGCAAAGTGGCAGTGTATAAATC AGGCTCGTGTGAGTTCGTTTCAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6340#0      TCCTCTCCTCGCCTCCAATGGCGCTGCTCTTCCCACCACCACCCCACGCGCTCTCCCCCA 60
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      AACCCCCCTTCCCCTCCACTCTCCGCTCCACGAGGTCACTGCGTCTCCGCCGCGCCACCG 120
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      CCGCCGCCGCCGCCGCCGGGGCCGGAGTCTCCTCCTCTTCCCCCTCGACCTCCTCGCCGG 180
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      AGAAGGCCCCGGCGCTGGACGTCGCCAGCGGGAAGAGGGGTGGTAAGAAGAGGAGGTCCC 240
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      TGAAGCCGAGCTTCGAGAAGCAGGCCATCCGCCGCTGGTCCGCGAGGGCGCCGTCCCAGC 300
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      GCGCCTCCTTCCCCTGGCAGCAGCAGCAGCAGCAGCAGCAGCCGGGCGGAGGTGAGGGTG 360
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      AGGCCGCGGGCGATCAGGAATCCGGTTGGAGTGGGAGCTCCACGCTGCAGTCCATCGTGG 420
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      ATTACTTCGACTTCGACTACGATTCCTCGGATGGTGATGGCGATGGCGATGGCGATGGCG 480
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      TCGTGGTCGGCGGCGAAGCGGCCGAGGCCCAGGAGGATGGGCCGCGTCCCGAGCCGAGCT 540
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      TCCTTCTCGGGAGCCGGCCGGTGTCAGCGCCGTGGATGCACGGGGAAGAAGAGCCCATGA 600
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      CGAACCAATTGGTTTCTGACGAGGAAGGGTTGGATGGGGATGGTGCTTCCGAGGATGAGA 660
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      TGGGTTTAGTTGATGGAGACGGAGACGAAGACGAAGATTTGGGGAGTGAGGAGGAGACGC 720
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      TAAGTGAGAGCTCAGACGGGGAATTCTCCGAGGATTATGCAGCACCGGCCGCAAATTCTT 780
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      CTTCTATGATGGATTCGGTACTGGACCATGTTTCTTCAGGTGGTGGGTTTTATAGAGGTA 840
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      CTAGGCGGAGTAGCGTAAATTCAATTGTTAACACAATGAGGAATTCGATGGAGGAAAGTA 900
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      GTAGAAATGCTGCGATTGAGTGTCCCGAGACCGAGGATTTTGTCCAGAAGCTCGGTCCTG 960
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      TGCTCCTCCCATGGGAGAGGGAGGGGGATGTCGATAGGCCGAGAAAGCGCAGCAACACGG 1020
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      AGCTGGCTGAGAGGACTATCCCAGAGCACGAGCTGCGGAGGCTTAGAGATGTGGCATTGA 1080
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      GGATGAAGGAGAGGATGAGGGTTGGTCCAGGAGGGGTCACTCAGCTCATTGTGGAGAGCA 1140
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      TTCATCAGAAATGGAGGGTGGAAGAGGTGGTCAAGCTGAGATTTGAAGGACCTCCAAGCC 1200
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      TGAACATGAAGAGAACTCATGATATACTAGAGGAGAGGACTGGAGGAGTTGTAATATGGA 1260
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      GGTCAGGGAGATCAGTTGTTTTATATAGGGGAATGAACTACAACCTTCGATGTGTGCAGT 1320
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      CGTATACACAAACTACAGAGGTTAATTTTGATAAAAGAGTTAGTAGTAATAGTGTTGAAC 1380
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      CTATCCATGTTGAACATAAATTTCAGAAGTCAGGTGCAGATGGACTGAATCGCTCAGCAT 1440
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      ATATTGTCAATTCCTCTGAAAAACCTACAGAGACATTTGATATCGATAGCTTCTTGGATC 1500
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      AGTTGGGACCGCGGTATAAAGATTGGTCTGGTCGTGGCCCTATTCCTGTGGATGCTGACT 1560
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      TGCTTCCTGGTGTTGTTCCTGGTTACAAGACACCATTTAGACTACTTCCTTACATGGTTA 1620
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      AAAGTACCCTTCGGAATAAGGAAATGACGGCTCTGCGTAGACTTGCAAGGCAAACTGCTC 1680
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      CTCATTTTGCTCTAGGGAGAAACAGGGAACACCAAGGATTAGCTACTGCTATCGTTAAAT 1740
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      TGTGGGAGAAAAGTTCTATTGCAAAGATTGCCATCAAGAGGGGGGTTCCAAATACATGCA 1800
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      ATGACAGAATGGCAGAAGAAATCAGGAAATTAACAGGAGGAGTGCTTCTATCGAGGAACA 1860
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      AGGAGTACATTGTCTTCTACAGGGGCAATGATTTCATAACACCTAAAGTAAGGCAAGTCT 1920
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      TGGTGGAGAAGCAAGAGCAAGCAATCACTTGGCAGGATGAGGAAGAATTGGCTCGGCTTA 1980
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      AAGCATCAGCCTCGATCAGTGTCAGACCCAAAGTATTTAAAAATCCCCCAGTTGCTGGCA 2040
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      CTCTCGCGGAAACTAGAGAGGCAAAATCTCGATGGGGAGATTCCATTAATGCTGAGCTCA 2100
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      GGAAAAAGGAGAAGAATCACATGATTCTTACAAAACATACCTCTCTTTTGAGGAACTTGA 2160
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      AGAGAAAATTGATTTTGGCAAAAACAAAGGTCATAAAAGCAGAAAAGGCCTTGGCTAAAG 2220
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      TTCAAGAATTTCTCTCTCCAGCAGAGCTTCCAACTGATTTGGAAACTGTTACAGATGAGG 2280
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      AACGCTTCTTACTTCGCAGAATTGGCCTGAAAATGAAGGCCTTTCTAATGCTTGGAAGAC 2340
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      GAGAAGTTTTTGATGGAACAGTACAGAACATGCACTTGCATTGGAAGCATCGAGAATTAG 2400
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      TCAAGGTTCTTGTAAAGGGGAAGAGCTTTCCACAAGTAAAACATATTGCAATATCTCTGG 2460
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      AAGCTGAAAGTGGAGGAGTGCTCATTTCAGTTGATAAGACGACAAAAGGATATGCAATCA 2520
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      TTTTGTACCGGGGTAAGAACTACAAGACGCCCCAAATTTTGAAGCTCGAAACCTATTGTC 2580
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      AAGGAGAAAAGCATTGGCACGGTCTATAGAGCTCCAAAGGCGGGAGGGATTAAATCATCA 2640
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      TATCTCAAATCTGCGAGACAAGATCTGGAAGCTGAAGTCTCAACTTGTACGAATGCAAGT 2700
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      TGCTGGGGAAAAACCAGATGCGGAGTTACTTCAAACAGTTGAGGCTGATTTGTCTAAAGA 2760
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      TGACGATAAAATAGAGGATGAAGGAGAGGAGGCCTACCTGCAAACTTACATCAGTGAGGA 2820
consensus_6340#1      ---------------------------GGAGGCCTACCTGCAAACTTACATCAGTGAGGA 33
                                                 *********************************

consensus_6340#0      TGAAGAGGAACCTGAGGATGATCAGAATGAATATCTCTGAATCTTAACTGGCGAAACTTC 2880
consensus_6340#1      TGAAGAGGAACCTGAGGATGATCAGAATGAATATCTCTGAATCTTAACTGGCGAAACTTC 93
                      ************************************************************

consensus_6340#0      GGTGAGTCCGGGAGAAAAGTCAGTAGTAAAGCATTGCATGTTCATATTGTGAAATTTCTG 2940
consensus_6340#1      GGTGAGTCCGGGAGAAAAGTCAGTAGTAAAGCATTGCATGTTCATATTGTGAAATTTCTG 153
                      ************************************************************

consensus_6340#0      CAGTGTTACTCAAGAGGCAGGCAGTTTTAAGATTCATCTATGGATTATTGCCAACACAAA 3000
consensus_6340#1      CAGTGTTACTCAAGAGGCAGGCAGTTTTAAGATTCATCTATGGATTATTGCCAACACAAA 213
                      ************************************************************

consensus_6340#0      TTGACCTGCAACAGCATTAGTGGCCTTTGTCCATTGCGAGATCAACGACAAAGGATGTAG 3060
consensus_6340#1      TTGACCTGCAACAGCATTAGTGGCCTTTGTCCATTGCGAGATCAACGACAAAGGATGTAG 273
                      ************************************************************

consensus_6340#0      CTTGAGTGTGTGTGGATTGTGGTGCATGGTCTGCAGTTGCTGCCATTCCTTTTTTTTTTT 3120
consensus_6340#1      CTTGAGTGTGTGTGGATTGTGGTGCATGGTCTGCAGTTGCTGCCATTCCTTTTTTTTTTT 333
                      ************************************************************

consensus_6340#0      TTTTTT--ACCTTGGCTACTTCCATAGCTCCATCCATGCCTGATGCCCTGATGGCCTTCT 3178
consensus_6340#1      TTTTTTTTACCTTGGCTACTTCCATAGCTCCATCCATGCCTGATGCCCTGATGGCCTTTT 393
                      ******  ************************************************** *

consensus_6340#0      ACATCCTGCAGATTTGAAAAGGTTTCTGTCAACACACGATCAAGTTGTCTGCTGTGCAGA 3238
consensus_6340#1      ACATCCTGCAGATTTGAAAAGGTTTCTGTCAACACACGATCAAGTTGTTTGCTGTGCAGA 453
                      ************************************************ ***********

consensus_6340#0      AGTTTGCAAAGTGGCAGTGTATAAATCAGGCTCGTGTGAGTTCGTTTCATTTTGCAGAAG 3298
consensus_6340#1      AGTTTGCAAAGTGGCAGTGTATAAATCAGGCTCGTGTGAGTTCGTTTCAAAAAAAAAAAA 513
                      *************************************************      * ** 

consensus_6340#0      CTGTAATTATATC 3311
consensus_6340#1      AAAAAAA------ 520
                          **       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)