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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6341#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 969 fasta sequence
[AACAAACATCCATCACTGCAGCAAATCATCATCATCATCATCATCACATACACTAATCGATCGATCAGCAGCAGATAGCTAATTAAGCTTGTTTGATTAGTTTCGCCGGAGATCGATCGATATGGAGAGGGTGGCGAAGCTGTCGACGGAGAAGGCGGTGGTGATCTTCACGGCGAGCAACTGCCCGATGTGCCACACGGTGGTGAGCCTCTTCTCCGACCTCGGCGTCGGCGCCGCCGTCCACGAGCTCGACCGCGACCCGCTCCACGGCCGGGACATGGAGCGCGACCTCGCCCGCCGCCTCGGCCGCTCCCCGCCCGTCCCCGCCGTCTTCATCGCCGGCAAGCTCGTCGGCTCCACCGACCGCGTCATGTCGCTCCACCTCGCCGGCAAGCTCGTCCCCATGCTCAAGGCCGCCGGCGCCATTTGGCTCTAGATCGCTCATCATAATTAAGCTCAATTAATTAATTAACCTTTCTAAACTTCACTGTTTTAATCGCTACTACATTCGTTTTAAAATATAAAAATATAGAAGATTCTTATATTTTAAGATGGAGGGGGTATATTTTTACTACTACCGTTATATATATTATATATATGTTATTTACACATATGCAATGCACCTTTGTATTGCATGCACGTGTGTAAAAAAAAGGCACACATACGAGTTTACCACTTACGCGAGTGACTGAGAAGTACTATATATATCTTATCTAAGAGAGATTATCTAAGAGAGACTATACTCACCTGAGGACTGCCAATATTTAATTGTTAGTTTGATATACATAAAGGGTGAGTGAGTTTTGCCGCTAGCTAGCATTAACTAGTAGCAATTACATATGAGGGCGAGGAATATATATAGCGAGTCTTTTACATGTAAAATAGGCTTTAATGTTATCCCTCTCCAGCTCTTTTTTCCAATGAGAGCTGTGTTTTGTAACCTCGTGATCGGGAATATAATGAAGCATT]
[+] EMBL AK063610 [AACAAACATCCATCACTGCAGCAAATCATCATCATCATCATCATCACATACACTAATCGATCGATCAGCAGCAGATAGCTAATTAAGCTTGTTTGATTAGTTTCGCCGGAGATCGATCGATATGGAGAGGGTGGCGAAGCTGTCGACGGAGAAGGCGGTGGTGATCTTCACGGCGAGCAACTGCCCGATGTGCCACACGGTGGTGAGCCTCTTCTCCGACCTCGGCGTCGGCGCCGCCGTCCACGAGCTCGACCGCGACCCGCTCCACGGCCGGGACATGGAGCGCGACCTCGCCCGCCGCCTCGGCCGCTCCCCGCCCGTCCCCGCCGTCTTCATCGCCGGCAAGCTCGTCGGCTCCACCGACCGCGTCATGTCGCTCCACCTCGCCGGCAAGCTCGTCCCCATGCTCAAGGCCGCCGGCGCCATTTGGCTCTAGATCGCTCATCATAATTAAGCTCAATTAATTAATTAACCTTTCTAAACTTCACTGTTTTAATCGCTACTACATTCGTTTTAAAATATAAAAATATAGAAGATTCTTATATTTTAAGATGGAGGGGGTATATTTTTACTACTACCGTTATATATATTATATATATGTTATTTACACATATGCAATGCACCTTTGTATTGCATGCACGTGTGTAAAAAAAAGGCACACATACGAGTTTACCACTTACGCGAGTGACTGAGAAGTACTATATATATCTTATCTAAGAGAGATTATCTAAGAGAGACTATACTCACCTGAGGACTGCCAATATTTAATTGTTAGTTTGATATACATAAAGGGTGAGTGAGTTTTGCCGCTAGCTAGCATTAACTAGTAGCAATTACATATGAGGGCGAGGAATATATATAGCGAGTCTTTTACATGTAAAATAGGCTTTAATGTTATCCCTCTCCAGCTCTTTTTTCCAATGAGAGCTGTGTTTTGTAACCTCGTGATCGGGAATATAATGAAGCATT]
[-] EMBL BI118730 [ TCACTGCAGCAAATCATCATCATCATCATCATCACATACACTAATCGATCGATCAGCAGCAGATAGCTAATTAAGCTTGTTTGATTAGTTTCGCCGGAGATCGATCGATATGGAGAGGGTGGCGAAGCTGTCGACGGAGAAGGCGGTGGTGATCTTCACGGCGAGCAACTGCCCGATGTGCCACACGGTGGTGAGCCTCTTCTCCGACCTCGGCGTCGGCGCCACCGTCCACGAGCTCGACCGCGACCCGCTCCA ]
consensusID : consensus_6341#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 589 fasta sequence
[TTCCAAATCATCATCTCAACTTCTCAAGCACACAGTGATCGAGAAGCTACTGGAAGCATCTAGAAGGGGTTCCAGGTCTCGATCGATGGAGA-GGGTGGCGAAGCTGGCGTCGGAGAGGGCGGTGGTGGTGTTCACGGCGAGCAACTGCGGCATGTGCCACGCCGTGACGAGCCTCCTCGTCGGCGAGCTGGGCGTCAACGCCGCCGTGCACGAGCTCGACAAGGACCCCCGCGGCAGGGACATGGAGAGGGAGCTCGCCAGGAGGCTCAACGGCGGCGGCGGCGGCGGCCGCGCCCTGCCGGCGGTGTTCGTCGGAGGCAACCTCGTCGGCGGCGCCAACCGGGTCATGTCGCTCCACCTCGCCGGCGAGCTCGTCCCCATGCTCAAGAACGCCGGCGCGCTCTGGCTCTAGTGTATATACGTGTGTGCATGCAGAATGCAGTTAATGCAGCGAATTAAGCCAGGTTTTTTATGTCCTCCTGTGCTGATGAGAATAAATCAAATCGATCGATCGAGTGGTGTAATGGTGAAGTTGTTGTAAATGTCGTCCATTTCGATAAATAAATTTAGATCTGATGAAAATGTTCTA]
[+] EMBL AK108017 [TTCCAAATCATCATCTCAACTTCTCAAGCACACAGTGATCGAGAAGCTACTGGAAGCATCTAGAAGGGGTTCCAGGTCTCGATCGATGGAGA GGGTGGCGAAGCTGGCGTCGGAGAGGGCGGTGGTGGTGTTCACGGCGAGCAACTGCGGCATGTGCCACGCCGTGACGAGCCTCCTCGTCGGCGAGCTGGGCGTCAACGCCGCCGTGCACGAGCTCGACAAGGACCCCCGCGGCAGGGACATGGAGAGGGAGCTCGCCAGGAGGCTCAACGGCGGCGGCGGCGGCGGCCGCGCCCTGCCGGCGGTGTTCGTCGGAGGCAACCTCGTCGGCGGCGCCAACCGGGTCATGTCGCTCCACCTCGCCGGCGAGCTCGTCCCCATGCTCAAGAACGCCGGCGCGCTCTGGCTCTAGTGTATATACGTGTGTGCATGCAGAATGCAGTTAATGCAGCGAATTAAGCCAGGTTTTTTATGTCCTCCTGTGCTGATGAGAATAAATCAAATCGATCGATCGAGTGGTGTAATGGTGAAGTTGTTGTAAATGTCGTCCATTTCGATAAATAAATTT ]
[+] EMBL CB635015 [ ATCTCAACTTCTCAAGCACACAGTGATCGAGAAGCTACTGGAAGCATCTAGAAGGGGTTCCAGGTCTCGATCGATGGAGACCGGAGGCGAAGCTGGCGTCGGAGAGGGCGGTGGTGGTGTTCACGGCGAGCAACTGCGGCATGTGCCACGCCGTGACGAGCCTCCTCGTCGGCGAGCTGGGCGTCAACGCCGCCGTGCACGAGCTCGACAAGGACCCCCGCGGCAGGGACATGGAGAGGGAGCTCGCCAGGAGGCTCAACGGCGGCGGCGGCGGCGGCCGCGCCGTGCCGGCGGTGTTCGTCGGAGGCAACCTCGTCGGCGGCGCCAACCGGGTCATGTCGCTCCACCTCGCCGGCGAGCTCGTCCCCATGCTCAAGAACGCCGGCGCGCTCTGGCTCTAGTGTATATACGTGTGTGCATGCAGAATGCAGTTAATGCAGCGAATTAAGCCAGGTTTTTTATGTCCTCCTGTGCTGATGAGAATAAATCAAATCGATCGATCGAGTGGTGTAATGGTGAAGTTGTTGTAAATGTCGTCCATTTCGATAAATAAATTTAGATCTGATGAAAATGTTCTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6341#0 AACAAACATCCATCACTGCAGCAAATCATCATCATCATCATCATCACATACACTAATCGA 60
consensus_6341#1 ------------------TTCCAAATCATCATC----TCAACTTCTCAAGCACACAGTGA 38
************ *** * ** ** *** * **
consensus_6341#0 TCGATCAGCAGCAGATAGCTAATTAAGCTTGTTTGATTAGTTTCGCCGGAGATCGATCGA 120
consensus_6341#1 TCGAGAAGCTACTGG---------AAGCATCTAGAAGGGGTT---CCAGGTCTCGATCGA 86
**** *** * * **** * * * *** ** * ********
consensus_6341#0 TATGGAGAGGGTGGCGAAGCTGTCGACGGAGAAGGCGGTGGTGATCTTCACGGCGAGCAA 180
consensus_6341#1 T--GGAGAGGGTGGCGAAGCTGGCGTCGGAGAGGGCGGTGGTGGTGTTCACGGCGAGCAA 144
* ******************* ** ****** ********** * **************
consensus_6341#0 CTGCCCGATGTGCCACACGGTGGTGAGCCTCTTCTCCGAC---CTCGGCGTCGGCGCCGC 237
consensus_6341#1 CTGCGGCATGTGCCACGCCGTGACGAGCCTCCTCGTCGGCGAGCTGGGCGTCAACGCCGC 204
**** ********* * *** ******* ** ** * ** ****** ******
consensus_6341#0 CGTCCACGAGCTCGACCGCGACCCGCTCCACGGCCGGGACATGGAGCGCGACCTCGCCCG 297
consensus_6341#1 CGTGCACGAGCTCGACAAGGACCC---CCGCGGCAGGGACATGGAGAGGGAGCTCGCCAG 261
*** ************ ***** ** **** *********** * ** ****** *
consensus_6341#0 CCGCCTCGGCCGCTCC-----------CCGC-CCGTCCCCGCCGTCTTCATCGCCGGCAA 345
consensus_6341#1 GAGGCTCAACGGCGGCGGCGGCGGCGGCCGCGCCCTGCCGGCGGTGTTCGTCGGAGGCAA 321
* *** * ** * **** ** * ** ** ** *** *** *****
consensus_6341#0 GCTCGTCGGCTCCACCGACCGCGTCATGTCGCTCCACCTCGCCGGCAAGCTCGTCCCCAT 405
consensus_6341#1 CCTCGTCGGCGGCGCCAACCGGGTCATGTCGCTCCACCTCGCCGGCGAGCTCGTCCCCAT 381
********* * ** **** ************************ *************
consensus_6341#0 GCTCAAGGCCGCCGGCGCCATTTGGCTCTAGATCGCTCAT-CATAATTAAGCTCAAT-TA 463
consensus_6341#1 GCTCAAGAACGCCGGCGCGCTCTGGCTCTAGTGTATATACGTGTGTGCATGCAGAATGCA 441
******* ********* * ********* * * * ** *** *
consensus_6341#0 ATTAATTAACCTTTCTAAACTTCACTGTTTTAATCGCTACTACATTCGTTTTAAAATATA 523
consensus_6341#1 GTTAATGCAGCGAATTAAGCCAGGTTTTTTATGTC-CTCCTGTGCTG----------ATG 490
***** * * *** * * *** ** ** ** * **
consensus_6341#0 AAAATATAGAAGATTCTTATATTTTAAGATGGAGGGGGTATATTTTTACTACTACCGTTA 583
consensus_6341#1 AGAATAAATCAAATCGATCGATCGAGTGGTGTAATGGTGAAGTTGTTGTAAATGTCGTCC 550
* **** * * ** * ** * ** * ** * ** ** * * ***
consensus_6341#0 TATATATTATATATATGTTATTTACACATATGCAATGCACCTTTGTATTGCATGCACGTG 643
consensus_6341#1 ATTTCGATAAATAAATTTAGATCTGATGAAAATGTTCTA--------------------- 589
* ** *** ** * * * * * *
consensus_6341#0 TGTAAAAAAAAGGCACACATACGAGTTTACCACTTACGCGAGTGACTGAGAAGTACTATA 703
consensus_6341#1 ------------------------------------------------------------
consensus_6341#0 TATATCTTATCTAAGAGAGATTATCTAAGAGAGACTATACTCACCTGAGGACTGCCAATA 763
consensus_6341#1 ------------------------------------------------------------
consensus_6341#0 TTTAATTGTTAGTTTGATATACATAAAGGGTGAGTGAGTTTTGCCGCTAGCTAGCATTAA 823
consensus_6341#1 ------------------------------------------------------------
consensus_6341#0 CTAGTAGCAATTACATATGAGGGCGAGGAATATATATAGCGAGTCTTTTACATGTAAAAT 883
consensus_6341#1 ------------------------------------------------------------
consensus_6341#0 AGGCTTTAATGTTATCCCTCTCCAGCTCTTTTTTCCAATGAGAGCTGTGTTTTGTAACCT 943
consensus_6341#1 ------------------------------------------------------------
consensus_6341#0 CGTGATCGGGAATATAATGAAGCATT 969
consensus_6341#1 --------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||