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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6345#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence
[TCCCGGGGTGCGGACGCCGCCGTCGCCGCCTCGCAGAGCGCCAGCACCGGCGCCGGCGCCGCTGACGCCTGCTCTTTCCCAGAGGTTCCTGGCGGAGCGCAGACCAGCGCCGGTGCCGGAGCCGGTGACCCGGAAGAGGTCCGACCTGGGCACCCTCATGAAACCCAAGGAGGACAAGGTGGAAGAGACCACGAAGCCTCTGCCGCCGCCGGCTGCAGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGAGGATGGCAAGGGAGGCAAGAGGGAAGATGGAAGAAGACAAGAAGAAGGCCAACGAGGAGGTGACGGACATGGCGCAGCTGAGGAGGCCGGCCTCGGCGAGCCGCCGGCAGCTGGTGAACGTGGCGGTGGCGGCCGTGGTCCTCCTCGGCATCACCCTCTACGTGTGGAACACCCTGAGGAACGCCGCAACCGGCGGCGGCGGCAACGGCCATGGCGCGAGCTACAGCG]
[+] EMBL AK062338 [TCCCGGGGTGCGGACGCCGCCGTCGCCGCCTCGCAGAGCGCCAGCACCGGCGCCGGCGCCGCTGACGCCTGCTCTTTCCCAGAGGTTCCTGGCGGAGCGCAGACCAGCGCCGGTGCCGGAGCCGGTGACCCGGAAGAGGTCCGACCTGGGCACCCTCATGAAACCCAAGGAGGACAAGGTGGAAGAGACCACGAAGCCTCTGCCGCCGCCGGCTGCAGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGAGGATGGCAAGGGAGGCAAGAGGGAAGATGGAAGAAGACAAGAAGAAGGCCAACGAGGAGGTGACGGACATGGCGCAGCTGAGGAGGCCGGCCTCGGCGAGCCGCCGGCAGCTGGTGAACGTGGCGGTGGCGGCCGTGGTCCTCCTCGGCATCACCCTCTACGTGTGGAACACCCTGAGGAACGCCGCAACCGGCGGCGGCGGCAACGGCCATGGCGCGAGCTACAGCG]
consensusID : consensus_6345#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence
[GGATNGGGGTANANTNAACGGAAAGTTGCCTGNTACCCAAGTTGAAATAACCNTCCTAAAGGGNACAAAAAGTNGNGTTCCCCCNCGGGGGGGCCCNTTTTAAAANAANNGAATCCCCCGGGNTGCAGGATTTGGCAGGGGGGNGGNTTCCCNATTCGNGTTTAAANNTTTAAAGNGNGNTTTTTTTGGNGGGANAAAGTAAAAGNAAATATGNGNGGGGNTTGTTAAATTAATNACGCGGGGGTGTTACGATTGCAAAAGAAAAGTTTTTTTGCTTTGGTGGATCAATTTGATGAAATAAGATGGTGAAAGGGGTTCCCGGCGGAGGGCAGACCAGCCCCGGTGCCGGAGCCGGTGACCCGGAAGAGGTCCGAACTGGGCACCCTTATGAAACCCAAGGGGGACAAGTGGAAGAGACCACGAAGCCTTTTCCCCCCCCGGC]
[-] EMBL BE229203 [GGATNGGGGTANANTNAACGGAAAGTTGCCTGNTACCCAAGTTGAAATAACCNTCCTAAAGGGNACAAAAAGTNGNGTTCCCCCNCGGGGGGGCCCNTTTTAAAANAANNGAATCCCCCGGGNTGCAGGATTTGGCAGGGGGGNGGNTTCCCNATTCGNGTTTAAANNTTTAAAGNGNGNTTTTTTTGGNGGGANAAAGTAAAAGNAAATATGNGNGGGGNTTGTTAAATTAATNACGCGGGGGTGTTACGATTGCAAAAGAAAAGTTTTTTTGCTTTGGTGGATCAATTTGATGAAATAAGATGGTGAAAGGGGTTCCCGGCGGAGGGCAGACCAGCCCCGGTGCCGGAGCCGGTGACCCGGAAGAGGTCCGAACTGGGCACCCTTATGAAACCCAAGGGGGACAAGTGGAAGAGACCACGAAGCCTTTTCCCCCCCCGGC]
consensusID : consensus_6345#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 425 fasta sequence
[ATCCATCAATCAACAGATACACACATGGATCCCAAAGTTGCTGTTGCTCTCGCTCTCGGCCTCGGCGAGCCGCCGGCAGCTGGTGAACGTGGCGGTGGCGGCCGTGGTCCTCCTCGGCATCACCCTCTACGTCTGGAACACCCTGAGGAACGCCGCAACCGGCGGCGGCGGCAACGGCCATGGCGCGAGCTACAGCGACGAGATGTGAAAAGAAAAGAAAAAAAAAAGGGCGCGAAAGTGTTGGAGGTGTCGCCGATCGAGTTTAAATGTTTAATGCGTGCTTCGTCTGGGAAGGGACAAAGCTAAAGTATATATGTGTGTGGATTGTTAATTTAATCACGCGGTGGTGTTACGACTTGCAAAAGACATGTTCTTTTGCTTTGGTGGATCAATTTGATGAAATAAGATGGTGAAAGAATGAGCAC]
[+] EMBL CB966279 [ATCCATCAATCAACAGATACACACATGGATCCCAAAGTTGCTGTTGCTCTCGCTCTCGGCCTCGGCGAGCCGCCGGCAGCTGGTGAACGTGGCGGTGGCGGCCGTGGTCCTCCTCGGCATCACCCTCTACGTCTGGAACACCCTGAGGAACGCCGCAACCGGCGGCGGCGGCAACGGCCATGGCGCGAGCTACAGCGACGAGATGTGAAAAGAAAAGAAAAAAAAAAGGGCGCGAAAGTGTTGGAGGTGTCGCCGATCGAGTTTAAATGTTTAATGCGTGCTTCGTCTGGGAAGGGACAAAGCTAAAGTATATATGTGTGTGGATTGTTAATTTAATCACGCGGTGGTGTTACGACTTGCAAAAGACATGTTCTTTTGCTTTGGTGGATCAATTTGATGAAATAAGATGGTGAAAGAATGAGCAC]
[+] EMBL CB967132 [ATCCATCAATCAACAGATACACACATGGATCCCAAAGTTGCTGTTGCTCTCGCTCTCGGCCTCGGCGAGCCGCCGGCAGCTGGTGAACGTGGCGGTGGCGGCCGTGGTCCTCCTCGGCATCACCCTCTACGTCTGGAACACCCTGAGGAACGCCGCAACCGGCGGCGGCGGCAACGGCCATGGCGCGAGCTACAGCGACGAGATGTGAAAAGAAAAGAAAAAAAAAAGGGCGCGAAAGTGTTGGAGGTGTCGCCGATCGAGTTTAAATGT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6345#0 TCCCGGGGTGCGGACGCCGCCGTCGCCGCCTCGCAGAGCGCCAGCACCGGCGCCGGCGCC 60
consensus_6345#2 --------------------ATCCATCAATCAACAGA-TACACACATGGATCCCAAAGTT 39
consensus_6345#1 --------------------------------GGATNGGGGTANANTNAACGGAAAGTTG 28
*
consensus_6345#0 GCTGACGCCTGCTCTTTCCCAGAGGTTCCTGGCGGAGCGCAGACCAGCG----CCGGTGC 116
consensus_6345#2 GCTGTTGCTCTCGCTCTC------GGCCTCGGCGAGCCGCCGGC---AG----CTGGTGA 86
consensus_6345#1 CCTGNTACCCAAGTTGAAATAACCNTCCTAAAGGGNACAAAAAGTNGNGTTCCCCCNCGG 88
*** * * * * * * * *
consensus_6345#0 CGGAGCCGGTGACCCGGAAGAGGTCCGACCTGGGCACCCTCATGAAACCCAAGGAGGACA 176
consensus_6345#2 ACGTGGCGGTGGC--GGCCGTGGTCCT-CCTCGGCATCACCCTCTACGTCTGGAA---CA 140
consensus_6345#1 GGGGGCCCNTTTTAAAANAANNGAATCCCCCGGGNTGCAGGATTTGGCAGGGGGGNGGNT 148
* * * * * ** ** * * *
consensus_6345#0 AGGTGGAAGAGACCACGAA-GCCTCTGCCGCCGCCGGCTGCAGCGGCGGCGGCGGCGGAG 235
consensus_6345#2 CCCTGAGGAACGCCGCAACCGGCGGCGGCGGCAACGGCCATGGCGCGAGCTACAGCGACG 200
consensus_6345#1 TCCCNATTCGNGTTTAAAN--NTTTAAAGNGNGNTTTTTTTGGNGGGANAAAGTAAAAGN 206
* * *
consensus_6345#0 GAGGAGGAGGAGAGGATGGCAAGGGAGGCAAGAGGGAAGATGGAAGAAGACAAGAAGAAG 295
consensus_6345#2 AGATGTGAAAAGAAAAGAAAAAAAAAAGGGCGCGAAAGTGTTGGAGGTGTCGCCGATCGA 260
consensus_6345#1 AAATATGNGNGGGGNTTGTTAAATTAATNACGCGGGGGTGTT-ACGATTGCAAAAGAAAA 265
* * ** * * * * * *
consensus_6345#0 GCCAACGAGGAGGTGACGGACATGGCGCAGCTGAGGAGGCCGGCCTCGGCGAGCCGCCGG 355
consensus_6345#2 GTTTAAATGTTTAATGCGTGCTTCGTCTGGGAAGGGACAAAGCTAAAGTATATATGTGTG 320
consensus_6345#1 GTTTTTTTGCTT-TGGTGGAT-CAATTTGATGAAATAAGATGGTGAAAGGGGTTC-CCGG 322
* * * * * *
consensus_6345#0 CAGCTGGTGAACGTGGCGGTGGCGGCCGTGGTC-CTCCTCGGCATCACCCTCTACGTGTG 414
consensus_6345#2 TGGATTGTTAATTTAATCACG-CGGTGGTGTTA-CGACTTGCAAAAGACATGTTCTTTTG 378
consensus_6345#1 CGGAGGGCAGAC-CAGCCCCGGTGCCGGAGCCGGTGACCCGGAAGAGGTCCGAAC-TGGG 380
* * * * * * * * * * * * *
consensus_6345#0 GAACACCCTGAGGAACGCCGCA-ACCGGCGGCGGCGGCAACGGCCATGGCGCGAGCTACA 473
consensus_6345#2 C----TTTGGTGGATCAATTTG-ATGAAATAAGATGGTGAAAGAATGAGCAC-------- 425
consensus_6345#1 CACCCTTATGAAACCCAAGGGGGACAAGTGGAAGAGACCACGAAGCCTTTTCCCCCCCCG 440
* * * * * *
consensus_6345#0 GCG 476
consensus_6345#2 ---
consensus_6345#1 GC- 442
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||